Re: [Rdkit-discuss] problems with 'Ames mutagenicity dataset analysis using RDKit and PANDAS' tutorial

[Andrew D. <da...@da...>]

On Nov 24, 2013, at 11:58 PM, Nikolas Fechner wrote:
> if I remember correctly 10.1 was an intermediate pandas version where the HTML rendering in tables, that we use for rendering the structures, does not work as we need it. In this version pandas introduced an HTML escaping, which leads to the plain text rendering of the respective cells, but the option to turn that off was only introduced in 0.11 as far as I recall.

That was it! I upgraded to 0.12, and I now have inline images.

> Regarding the plot truncation problem:

That problem also disappeared once I upgraded the system.

> Besides, on the RDKit I presented an extended version of the notebook you are referring to. It can be found on github ( https://github.com/rdkit/UGM_2013/tree/master/Tutorials/pandastools) or viewed directly on http://nbviewer.ipython.org/urls/raw.github.com/rdkit/UGM_2013/master/Tutorials/pandastools/Pandas_RDKit_UGM.ipynb.

Thanks, I'll take a look at it.

Cheers,

				Andrew
				da...@da...