Re: [Rdkit-discuss] name generator
Open-Source Cheminformatics and Machine Learning
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From: Markus S. <sit...@he...> - 2013-08-28 14:44:47
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Hi Sergio, there may be random entries in the Resolver database behind http://cactus.nci.nih.gov/chemical/structure but definitely nothing systematic. Markus On Wed, 28 Aug 2013 07:54:26 -0400, Sergio Martinez Cuesta <ser...@gm...> wrote: > Thanks Greg, > > I agree, it certainly works for molecules, however I am testing whether > cactus is able to provide names to molecular >fragments as well. Things > like methyl phosphinite (COP) are named after that. > See: > http://cactus.nci.nih.gov/chemical/structure/COP/iupac_name > > Do you have any hints on systematically naming molecular fragments? > > > > > > > > > On 28 August 2013 05:53, Greg Landrum <gre...@gm...> wrote: >> >> On Tue, Aug 27, 2013 at 10:32 PM, Sergio Martinez Cuesta >> <ser...@gm...> wrote: >>> Oc(:[nH2]):[nH2] does not seem to be in the database >>> >>> http://cactus.nci.nih.gov/chemical/structure/Oc(:[nH2]):[nH2]/iupac_name >>> >>> molcovert does not generate a name either. >> >> That's not actually a stable molecule. it is, at best, a piece of a >> molecule. OC(N)N works fine with the NCI >>lookup. >> What molecule are you trying to name? >> >>>> -greg |