Re: [Rdkit-discuss] install error

[Jan H. J. <ja...@bi...>]

OK, that looks fine. And I assume you build directly in 
/opt/RDKit_latest/latest/, so 'make install' puts files in 
/opt/RDKit_latest/latest/lib/.

The only other thing that comes to my mind is if your boost libraries 
are included in LD_LIBRARY_PATH.

Cheers
-- Jan

On 2013-06-05 16:55, Yingfeng Wang wrote:
> Yes, I did.
>
> export RDBASE=/opt/RDKit_latest/latest
> export LD_LIBRARY_PATH=$RDBASE/lib:$LD_LIBRARY_PATH
> export PYTHONPATH=$RDBASE:$PYTHONPATH
>
> I put them on ~/.bashrc
>
>
> On Wed, Jun 5, 2013 at 10:53 AM, Jan Holst Jensen 
> <ja...@bi... <mailto:ja...@bi...>> wrote:
>
>     Hi Yingfeng,
>
>     Looks like what happened to me, when I had forgotten to set the
>     environment. Did you set LD_LIBRARY_PATH to $RDBASE/lib before
>     running the tests ?
>
>     Kind regards
>     -- Jan Holst Jensen
>
>
>     On 2013-06-05 16:09, Yingfeng Wang wrote:
>>     Yes. I tried again. This time,
>>
>>     after run download-inchi.sh
>>
>>     I
>>     mkdir build
>>     cd build
>>     sudo cmake .. -DRDK_BUILD_INCHI_SUPPORT=ON
>>     sudo make
>>     sudo make install
>>
>>     by far, no error reported.
>>
>>     but, when I run sudo ctest
>>
>>     I got
>>
>>     The following tests FAILED:
>>      1 - testInchi (OTHER_FAULT)
>>      3 - testDataStructs (OTHER_FAULT)
>>      4 - pyBV (Failed)
>>      5 - pyDiscreteValueVect (Failed)
>>      6 - pySparseIntVect (Failed)
>>      8 - testGrid (OTHER_FAULT)
>>      9 - testPyGeometry (Failed)
>>     12 - pyAlignment (Failed)
>>     16 - pyDistGeom (Failed)
>>     20 - graphmolMolOpsTest (SEGFAULT)
>>     22 - graphmoltestChirality (OTHER_FAULT)
>>     23 - graphmoltestPickler (OTHER_FAULT)
>>     25 - testDepictor (OTHER_FAULT)
>>     26 - pyDepictor (Failed)
>>     29 - fileParsersTest1 (OTHER_FAULT)
>>     30 - testMolSupplier (OTHER_FAULT)
>>     31 - testMolWriter (OTHER_FAULT)
>>     32 - testTplParser (OTHER_FAULT)
>>     33 - testMol2ToMol (OTHER_FAULT)
>>     35 - testReaction (OTHER_FAULT)
>>     36 - pyChemReactions (Failed)
>>     37 - testChemTransforms (OTHER_FAULT)
>>     40 - testFragCatalog (OTHER_FAULT)
>>     41 - pyFragCatalog (Failed)
>>     42 - testDescriptors (OTHER_FAULT)
>>     43 - pyMolDescriptors (Failed)
>>     44 - testFingerprints (OTHER_FAULT)
>>     45 - pyPartialCharges (Failed)
>>     46 - testMolTransforms (OTHER_FAULT)
>>     47 - pyMolTransforms (Failed)
>>     48 - testForceFieldHelpers (OTHER_FAULT)
>>     49 - pyForceFieldHelpers (Failed)
>>     50 - testDistGeomHelpers (OTHER_FAULT)
>>     51 - pyDistGeom (Failed)
>>     52 - testMolAlign (OTHER_FAULT)
>>     53 - pyMolAlign (Failed)
>>     54 - testFeatures (OTHER_FAULT)
>>     55 - pyChemicalFeatures (Failed)
>>     56 - testShapeHelpers (OTHER_FAULT)
>>     57 - pyShapeHelpers (Failed)
>>     59 - pyMolCatalog (Failed)
>>     61 - pySLNParse (Failed)
>>     62 - pyGraphMolWrap (Failed)
>>     63 - pyTestConformerWrap (Failed)
>>     66 - pyMatCalc (Failed)
>>     67 - pyCMIM (Failed)
>>     68 - pyRanker (Failed)
>>     70 - pyFeatures (Failed)
>>     71 - pythonTestDbCLI (Failed)
>>     72 - pythonTestDirML (Failed)
>>     77 - pythonTestDirChem (Failed)
>>     Errors while running CTest
>>
>>     Thanks.
>>
>>
>>
>>     On Wed, Jun 5, 2013 at 5:54 AM, JP <jea...@in...
>>     <mailto:jea...@in...>> wrote:
>>
>>         mmmm,
>>
>>         Before running cmake - have you
>>         run ./External/INCHI-API/download-inchi.sh ?
>>
>>
>>
>>
>>         On 5 June 2013 04:13, Yingfeng Wang <ywa...@gm...
>>         <mailto:ywa...@gm...>> wrote:
>>
>>             After getting the latest code by git, I install RDKit on
>>             my ubuntu 12.04.
>>
>>             In the step of make install, I got
>>
>>             CMake Error at External/INCHI-API/cmake_install.cmake:124
>>             (FILE):
>>
>>             It seems the
>>             file $RDBASE/lib/libRDInchiLib.so.1.2013.06.1pre can't be
>>             found. Please note that I have turned on the flag of inchi.
>>
>>             Thanks.
>>
>>             Yingfeng
>>
>
>