Re: [Rdkit-discuss] install error

[Jan H. J. <ja...@bi...>]

Hi Yingfeng,

Looks like what happened to me, when I had forgotten to set the 
environment. Did you set LD_LIBRARY_PATH to $RDBASE/lib before running 
the tests ?

Kind regards
-- Jan Holst Jensen

On 2013-06-05 16:09, Yingfeng Wang wrote:
> Yes. I tried again. This time,
>
> after run download-inchi.sh
>
> I
> mkdir build
> cd build
> sudo cmake .. -DRDK_BUILD_INCHI_SUPPORT=ON
> sudo make
> sudo make install
>
> by far, no error reported.
>
> but, when I run sudo ctest
>
> I got
>
> The following tests FAILED:
>  1 - testInchi (OTHER_FAULT)
>  3 - testDataStructs (OTHER_FAULT)
>  4 - pyBV (Failed)
>  5 - pyDiscreteValueVect (Failed)
>  6 - pySparseIntVect (Failed)
>  8 - testGrid (OTHER_FAULT)
>  9 - testPyGeometry (Failed)
> 12 - pyAlignment (Failed)
> 16 - pyDistGeom (Failed)
> 20 - graphmolMolOpsTest (SEGFAULT)
> 22 - graphmoltestChirality (OTHER_FAULT)
> 23 - graphmoltestPickler (OTHER_FAULT)
> 25 - testDepictor (OTHER_FAULT)
> 26 - pyDepictor (Failed)
> 29 - fileParsersTest1 (OTHER_FAULT)
> 30 - testMolSupplier (OTHER_FAULT)
> 31 - testMolWriter (OTHER_FAULT)
> 32 - testTplParser (OTHER_FAULT)
> 33 - testMol2ToMol (OTHER_FAULT)
> 35 - testReaction (OTHER_FAULT)
> 36 - pyChemReactions (Failed)
> 37 - testChemTransforms (OTHER_FAULT)
> 40 - testFragCatalog (OTHER_FAULT)
> 41 - pyFragCatalog (Failed)
> 42 - testDescriptors (OTHER_FAULT)
> 43 - pyMolDescriptors (Failed)
> 44 - testFingerprints (OTHER_FAULT)
> 45 - pyPartialCharges (Failed)
> 46 - testMolTransforms (OTHER_FAULT)
> 47 - pyMolTransforms (Failed)
> 48 - testForceFieldHelpers (OTHER_FAULT)
> 49 - pyForceFieldHelpers (Failed)
> 50 - testDistGeomHelpers (OTHER_FAULT)
> 51 - pyDistGeom (Failed)
> 52 - testMolAlign (OTHER_FAULT)
> 53 - pyMolAlign (Failed)
> 54 - testFeatures (OTHER_FAULT)
> 55 - pyChemicalFeatures (Failed)
> 56 - testShapeHelpers (OTHER_FAULT)
> 57 - pyShapeHelpers (Failed)
> 59 - pyMolCatalog (Failed)
> 61 - pySLNParse (Failed)
> 62 - pyGraphMolWrap (Failed)
> 63 - pyTestConformerWrap (Failed)
> 66 - pyMatCalc (Failed)
> 67 - pyCMIM (Failed)
> 68 - pyRanker (Failed)
> 70 - pyFeatures (Failed)
> 71 - pythonTestDbCLI (Failed)
> 72 - pythonTestDirML (Failed)
> 77 - pythonTestDirChem (Failed)
> Errors while running CTest
>
> Thanks.
>
>
>
> On Wed, Jun 5, 2013 at 5:54 AM, JP <jea...@in... 
> <mailto:jea...@in...>> wrote:
>
>     mmmm,
>
>     Before running cmake - have you
>     run ./External/INCHI-API/download-inchi.sh ?
>
>
>
>
>     On 5 June 2013 04:13, Yingfeng Wang <ywa...@gm...
>     <mailto:ywa...@gm...>> wrote:
>
>         After getting the latest code by git, I install RDKit on my
>         ubuntu 12.04.
>
>         In the step of make install, I got
>
>         CMake Error at External/INCHI-API/cmake_install.cmake:124 (FILE):
>
>         It seems the file $RDBASE/lib/libRDInchiLib.so.1.2013.06.1pre
>         can't be found. Please note that I have turned on the flag of
>         inchi.
>
>         Thanks.
>
>         Yingfeng
>