Re: [Rdkit-discuss] install error

[Yingfeng W. <ywa...@gm...>]

Yes. I tried again. This time,

after run download-inchi.sh

I
mkdir build
cd build
sudo cmake .. -DRDK_BUILD_INCHI_SUPPORT=ON
sudo make
sudo make install

by far, no error reported.

but, when I run sudo ctest

I got

The following tests FAILED:
  1 - testInchi (OTHER_FAULT)
  3 - testDataStructs (OTHER_FAULT)
  4 - pyBV (Failed)
  5 - pyDiscreteValueVect (Failed)
  6 - pySparseIntVect (Failed)
  8 - testGrid (OTHER_FAULT)
  9 - testPyGeometry (Failed)
 12 - pyAlignment (Failed)
 16 - pyDistGeom (Failed)
 20 - graphmolMolOpsTest (SEGFAULT)
 22 - graphmoltestChirality (OTHER_FAULT)
 23 - graphmoltestPickler (OTHER_FAULT)
 25 - testDepictor (OTHER_FAULT)
 26 - pyDepictor (Failed)
 29 - fileParsersTest1 (OTHER_FAULT)
 30 - testMolSupplier (OTHER_FAULT)
 31 - testMolWriter (OTHER_FAULT)
 32 - testTplParser (OTHER_FAULT)
 33 - testMol2ToMol (OTHER_FAULT)
 35 - testReaction (OTHER_FAULT)
 36 - pyChemReactions (Failed)
 37 - testChemTransforms (OTHER_FAULT)
 40 - testFragCatalog (OTHER_FAULT)
 41 - pyFragCatalog (Failed)
 42 - testDescriptors (OTHER_FAULT)
 43 - pyMolDescriptors (Failed)
 44 - testFingerprints (OTHER_FAULT)
 45 - pyPartialCharges (Failed)
 46 - testMolTransforms (OTHER_FAULT)
 47 - pyMolTransforms (Failed)
 48 - testForceFieldHelpers (OTHER_FAULT)
 49 - pyForceFieldHelpers (Failed)
 50 - testDistGeomHelpers (OTHER_FAULT)
 51 - pyDistGeom (Failed)
 52 - testMolAlign (OTHER_FAULT)
 53 - pyMolAlign (Failed)
 54 - testFeatures (OTHER_FAULT)
 55 - pyChemicalFeatures (Failed)
 56 - testShapeHelpers (OTHER_FAULT)
 57 - pyShapeHelpers (Failed)
 59 - pyMolCatalog (Failed)
 61 - pySLNParse (Failed)
 62 - pyGraphMolWrap (Failed)
 63 - pyTestConformerWrap (Failed)
 66 - pyMatCalc (Failed)
 67 - pyCMIM (Failed)
 68 - pyRanker (Failed)
 70 - pyFeatures (Failed)
 71 - pythonTestDbCLI (Failed)
 72 - pythonTestDirML (Failed)
 77 - pythonTestDirChem (Failed)
Errors while running CTest

Thanks.



On Wed, Jun 5, 2013 at 5:54 AM, JP <jea...@in...> wrote:

> mmmm,
>
> Before running cmake - have you run ./External/INCHI-API/download-inchi.sh
> ?
>
>
>
>
> On 5 June 2013 04:13, Yingfeng Wang <ywa...@gm...> wrote:
>
>> After getting the latest code by git, I install RDKit on my ubuntu 12.04.
>>
>> In the step of make install, I got
>>
>> CMake Error at External/INCHI-API/cmake_install.cmake:124 (FILE):
>>
>> It seems the file $RDBASE/lib/libRDInchiLib.so.1.2013.06.1pre can't be
>> found. Please note that I have turned on the flag of inchi.
>>
>> Thanks.
>>
>> Yingfeng
>>
>>
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>