[Rdkit-discuss] Installation problems

[Nicholas F. <Nic...@ic...>]

Hi All,
I was hoping to avoid this, quite an embarrassing problem. Earlier when trying to compile some C++ code using my Homebrewed RDKit I decided (in my infinite ignorance) that the error that I had was because some flags weren't set write for my architecture and so I then tried to uninstall rdkit completely and install again but from source this time. After about 5 hours of pain, actually having to remove Python at one point, I have given up. I'm now trying to install the Hombrew again to get me at least back to where I was however I'm getting an error, which is 

CC: /usr/bin/clang
CXX: /usr/bin/clang++ => /usr/bin/clang
LD: /usr/bin/clang
CFLAGS: -Os -w -pipe -march=native -Qunused-arguments
CXXFLAGS: -Os -w -pipe -march=native -Qunused-arguments
MAKEFLAGS: -j24

Error: Failed executing: cmake . -DCMAKE_INSTALL_PREFIX='/usr/local/Cellar/rdkit/2011.12.1' -DCMAKE_BUILD_TYPE=None -Wno-dev -DRDK_INSTALL_INTREE=OFF -DRDK_BUILD_SWIG_WRAPPERS=ON -DRDK_INSTALL_STATIC_LIBS=OFF 
If `brew doctor' does not help diagnose the issue, please report the bug:
    https://github.com/mxcl/homebrew/wiki/checklist-before-filing-a-new-issu

I'm really sorry for having to ask, this is completely my own fault, but I'm quite stuck.

Best,
Nick

The Institute of Cancer Research: Royal Cancer Hospital, a charitable Company Limited by Guarantee, Registered in England under Company No. 534147 with its Registered Office at 123 Old Brompton Road, London SW7 3RP.

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