M scripts/MutationAnnotation.pl
M src/special/ReadStatistics.java
AM scripts/ExonCovSelect.pl
AM scripts/AScomp_merged.pl
M Dockerfile
M Dockerfile
M Dockerfile
A ebfiles
M Dockerfile
M src/special/IntervalCoverage.java
M scripts/consistentBlocks.pl
M scripts/consistentBlocks.pl
AM scripts/TableDiff.pl
M ReleaseNote.txt
M scripts/blast2psl.pl
M src/misc/filter/PairInDistance.java
M scripts/sMonitor.pl
AM scripts/rearrangeDetector.pl
M scripts/blast2psl.pl
AM scripts/consistentIndel.pl
M scripts/MappingMinimap2.pl
M scripts/RPKMcorrelation.pl
A src/misc/SAM2PSL.java
AM scripts/sMonitor.pl
M scripts/cgff2PSL.pl
AM scripts/FastqReverse.pl
AM scripts/MastPairCompareWrapper.pl
M src/special/PromoterCGFF.java
M scripts/MutationAnnotation.pl
AM scripts/mergeExonCount.pl
M scripts/MappingBlat.pl
A src/misc/filter/MonoSeq.java
M scripts/consistentBlocks.pl
M scripts/consistentBlocks.pl
M scripts/consistentBlocks.pl
M scripts/consistentIterator.pl
M scripts/consistentBlocks.pl
M scripts/consistentBlocks.pl
D scripts/consistent.pl
M src/misc/GffTree.java
A scripts/mergedCoverage.pl
M scripts/MergeSam2.pl
M scripts/MergeSam2.pl
M scripts/MutationAnnotation.pl
M scripts/MutationAnnotation.pl
M scripts/MutationAnnotation.pl
M scripts/MutationAnnotation.pl