r-gregmisc-users

[R-gregmisc-users] SF.net SVN: r-gregmisc:[1728] trunk/gplots/man/ci2d.Rd

[<wa...@us...>]

Revision: 1728
          http://sourceforge.net/p/r-gregmisc/code/1728
Author:   warnes
Date:     2013-10-11 21:07:30 +0000 (Fri, 11 Oct 2013)
Log Message:
-----------
Use gdata::nobs in example

Modified Paths:
--------------
    trunk/gplots/man/ci2d.Rd

Modified: trunk/gplots/man/ci2d.Rd
===================================================================
--- trunk/gplots/man/ci2d.Rd	2013-10-11 21:03:34 UTC (rev 1727)
+++ trunk/gplots/man/ci2d.Rd	2013-10-11 21:07:30 UTC (rev 1728)
@@ -208,7 +208,7 @@
    sd.x <- sd(geyser$duration)
    sd.y <- sd(geyser$waiting)
 
-   t.value <- qt(c(0.05,0.95), df=nobs(geyser$duration), lower=TRUE)
+   t.value <- qt(c(0.05,0.95), df=gdata::nobs(geyser$duration), lower=TRUE)
    ci.x <- mean.x +  t.value* sd.x
    ci.y <- mean.y +  t.value* sd.y
 

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[R-gregmisc-users] SF.net SVN: r-gregmisc:[1733] trunk/gplots/man/ci2d.Rd

[<wa...@us...>]

Revision: 1733
          http://sourceforge.net/p/r-gregmisc/code/1733
Author:   warnes
Date:     2013-10-12 00:09:52 +0000 (Sat, 12 Oct 2013)
Log Message:
-----------
Mark one example dontrun to avoid --as-cran warning.

Modified Paths:
--------------
    trunk/gplots/man/ci2d.Rd

Modified: trunk/gplots/man/ci2d.Rd
===================================================================
--- trunk/gplots/man/ci2d.Rd	2013-10-11 22:09:09 UTC (rev 1732)
+++ trunk/gplots/man/ci2d.Rd	2013-10-12 00:09:52 UTC (rev 1733)
@@ -256,6 +256,7 @@
    ####
    ## Test with a large number of points
    ####
+   \dontrun{
    x <- rnorm(60000, sd=1)
    y <- c( rnorm(40000, mean=x, sd=1),
            rnorm(20000, mean=x+4, sd=1) )
@@ -263,7 +264,7 @@
    hist2d(x,y)
    ci <- ci2d(x,y)
    ci
-
+   }
 }
 \keyword{dplot}
 \keyword{hplot}

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[R-gregmisc-users] SF.net SVN: r-gregmisc:[1811] trunk/gplots/man/ci2d.Rd

[<wa...@us...>]

Revision: 1811
          http://sourceforge.net/p/r-gregmisc/code/1811
Author:   warnes
Date:     2014-04-17 19:03:08 +0000 (Thu, 17 Apr 2014)
Log Message:
-----------
Add reference to r2d2::conf2d.

Modified Paths:
--------------
    trunk/gplots/man/ci2d.Rd

Modified: trunk/gplots/man/ci2d.Rd
===================================================================
--- trunk/gplots/man/ci2d.Rd	2014-04-17 17:33:31 UTC (rev 1810)
+++ trunk/gplots/man/ci2d.Rd	2014-04-17 19:03:08 UTC (rev 1811)
@@ -65,6 +65,10 @@
   Confidence intervals generated by ci2d are \emph{approximate}, and
   are subject to biases and/or artifacts induced by the binning or
   kernel smoothing method, bin locations, bin sizes, and kernel bandwidth.
+
+  The \code{\link[r2d2]{conf2d}} function in the \pkg{r2d2} package may create a more
+  accurate confidence region, and reports the actual proportion of
+  points inside the region.
   }
 \value{
   A \code{ci2d} object consisting of a list containing (at least) the
@@ -82,8 +86,8 @@
 }
 \author{ Gregory R. Warnes \email{gr...@wa...}}
 \seealso{
-  \code{\link[KernSmooth]{bkde2D}}, \code{\link[KernSmooth]{dpik}},
-  \code{\link{hist2d}}
+  \code{\link[KernSmooth]{bkde2D}}, \code{\link[r2d2]{conf2d}},
+  \code{\link[KernSmooth]{dpik}}, \code{\link{hist2d}}
 }
 \examples{
    ####

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