Thread: [R-gregmisc-users] SF.net SVN: r-gregmisc:[1315] trunk/gplots/man

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r-gregmisc-users

[R-gregmisc-users] SF.net SVN: r-gregmisc:[1315] trunk/gplots/man

From: <wa...@us...> - 2009-04-22 17:15:31

Revision: 1315
          http://r-gregmisc.svn.sourceforge.net/r-gregmisc/?rev=1315&view=rev
Author:   warnes
Date:     2009-04-22 17:15:11 +0000 (Wed, 22 Apr 2009)

Log Message:
-----------
VADeaths data set has move to dataset package

Modified Paths:
--------------
    trunk/gplots/man/barplot2.Rd
    trunk/gplots/man/ooplot.Rd

Modified: trunk/gplots/man/barplot2.Rd
===================================================================
--- trunk/gplots/man/barplot2.Rd	2009-04-19 23:25:04 UTC (rev 1314)
+++ trunk/gplots/man/barplot2.Rd	2009-04-22 17:15:11 UTC (rev 1315)
@@ -237,7 +237,7 @@
 barplot2(tN, space = 1.5, axisnames = FALSE,
         sub = "barplot2(..., space = 1.5, axisnames = FALSE)")
 
-data(VADeaths, package = "base")
+data(VADeaths, package = "datasets")
 barplot2(VADeaths, plot = FALSE)
 barplot2(VADeaths, plot = FALSE, beside = TRUE)
 

Modified: trunk/gplots/man/ooplot.Rd
===================================================================
--- trunk/gplots/man/ooplot.Rd	2009-04-19 23:25:04 UTC (rev 1314)
+++ trunk/gplots/man/ooplot.Rd	2009-04-22 17:15:11 UTC (rev 1315)
@@ -162,7 +162,7 @@
   }
 \seealso{ \code{\link[plot]{plot}}, \code{\link[plot]{boxplot}} }
 \examples{
-     data(VADeaths, package = "base")
+     data(VADeaths, package = "datasets")
 
      VADeaths <- cbind( Age=c(50,55,60,65,70), VADeaths)
 


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[R-gregmisc-users] SF.net SVN: r-gregmisc:[1319] trunk/gplots/man

From: <wa...@us...> - 2009-05-08 22:01:18

Revision: 1319
          http://r-gregmisc.svn.sourceforge.net/r-gregmisc/?rev=1319&view=rev
Author:   warnes
Date:     2009-05-08 22:01:12 +0000 (Fri, 08 May 2009)

Log Message:
-----------
Update Greg's email address to 'gr...@ra...'

Modified Paths:
--------------
    trunk/gplots/man/balloonplot.Rd
    trunk/gplots/man/bandplot.Rd
    trunk/gplots/man/boxplot.n.Rd
    trunk/gplots/man/colorpanel.Rd
    trunk/gplots/man/hist2d.Rd
    trunk/gplots/man/ooplot.Rd
    trunk/gplots/man/overplot.Rd
    trunk/gplots/man/plot.lm2.Rd
    trunk/gplots/man/plotCI.Rd
    trunk/gplots/man/plotmeans.Rd
    trunk/gplots/man/residplot.Rd
    trunk/gplots/man/sinkplot.Rd
    trunk/gplots/man/smartlegend.Rd
    trunk/gplots/man/space.Rd
    trunk/gplots/man/textplot.Rd
    trunk/gplots/man/wapply.Rd

Modified: trunk/gplots/man/balloonplot.Rd
===================================================================
--- trunk/gplots/man/balloonplot.Rd	2009-05-08 21:56:38 UTC (rev 1318)
+++ trunk/gplots/man/balloonplot.Rd	2009-05-08 22:01:12 UTC (rev 1319)
@@ -118,7 +118,7 @@
 \references{Function inspired by question posed on R-help by Ramon
   Alonso-Allende \email{al...@cn...}.}
 
-\author{ Gregory R. Warnes \email{wa...@bs...} }
+\author{ Gregory R. Warnes \email{gr...@ra...} }
 
 \seealso{ \code{\link{plot.table}} }
 

Modified: trunk/gplots/man/bandplot.Rd
===================================================================
--- trunk/gplots/man/bandplot.Rd	2009-05-08 21:56:38 UTC (rev 1318)
+++ trunk/gplots/man/bandplot.Rd	2009-05-08 22:01:12 UTC (rev 1319)
@@ -60,7 +60,7 @@
 \value{
   Invisibly returns a list containing the x,y points plotted for each line.
 }
-\author{ Gregory R. Warnes \email{wa...@bs...}
+\author{ Gregory R. Warnes \email{gr...@ra...}
 }
 \seealso{ \code{\link{wapply}}, \code{\link{lowess}}}
 \examples{

Modified: trunk/gplots/man/boxplot.n.Rd
===================================================================
--- trunk/gplots/man/boxplot.n.Rd	2009-05-08 21:56:38 UTC (rev 1318)
+++ trunk/gplots/man/boxplot.n.Rd	2009-05-08 22:01:12 UTC (rev 1319)
@@ -38,7 +38,7 @@
   \item{shrink}{ value to shrink character size (cex) when annotating.}
   \item{textcolor}{ text color. }
 }
-\author{ Gregory R. Warnes \email{wa...@bs...}}
+\author{ Gregory R. Warnes \email{gr...@ra...}}
 \seealso{ \code{\link{boxplot}}, \code{\link{text}}}
 
 \examples{

Modified: trunk/gplots/man/colorpanel.Rd
===================================================================
--- trunk/gplots/man/colorpanel.Rd	2009-05-08 21:56:38 UTC (rev 1318)
+++ trunk/gplots/man/colorpanel.Rd	2009-05-08 22:01:12 UTC (rev 1319)
@@ -42,7 +42,7 @@
 \value{
   Vector of HTML-style RGB colors.
 }
-\author{ Gregory R. Warnes \email{wa...@bs...} }
+\author{ Gregory R. Warnes \email{gr...@ra...} }
 \seealso{ \code{\link[base]{colors} } }
 \examples{
 

Modified: trunk/gplots/man/hist2d.Rd
===================================================================
--- trunk/gplots/man/hist2d.Rd	2009-05-08 21:56:38 UTC (rev 1318)
+++ trunk/gplots/man/hist2d.Rd	2009-05-08 22:01:12 UTC (rev 1319)
@@ -63,7 +63,7 @@
   \item{y}{lower y limit of each bin}
 }
 %\references{ ~put references to the literature/web site here ~ }
-\author{ Gregory R. Warnes \email{wa...@bs...}}
+\author{ Gregory R. Warnes \email{gr...@ra...}}
 %\note{ ~~further notes~~ }
 
 \seealso{ \code{\link{image}}, \code{\link{persp}}, \code{\link{hist}} }

Modified: trunk/gplots/man/ooplot.Rd
===================================================================
--- trunk/gplots/man/ooplot.Rd	2009-05-08 21:56:38 UTC (rev 1318)
+++ trunk/gplots/man/ooplot.Rd	2009-05-08 22:01:12 UTC (rev 1319)
@@ -157,7 +157,7 @@
   midpoints of each \emph{group} of bars, see example.
 }
 \author{Lodewijk Bonebakker \email{bon...@co...} with modifications
-  by Gregory R. Warnes \email{wa...@bs...}.
+  by Gregory R. Warnes \email{gr...@ra...}.
   Based on barplot2().
   }
 \seealso{ \code{\link[plot]{plot}}, \code{\link[plot]{boxplot}} }

Modified: trunk/gplots/man/overplot.Rd
===================================================================
--- trunk/gplots/man/overplot.Rd	2009-05-08 21:56:38 UTC (rev 1318)
+++ trunk/gplots/man/overplot.Rd	2009-05-08 22:01:12 UTC (rev 1319)
@@ -55,7 +55,7 @@
 \value{
   A copy of the data split by the conditioning variable.
 }
-\author{ Gregory R. Warnes \email{wa...@bs...} }
+\author{ Gregory R. Warnes \email{gr...@ra...} }
 \seealso{
   \code{\link[base]{interaction.plot}},
   \code{\link[base]{coplot}} for alternative visualizations of 3-way data.}

Modified: trunk/gplots/man/plot.lm2.Rd
===================================================================
--- trunk/gplots/man/plot.lm2.Rd	2009-05-08 21:56:38 UTC (rev 1318)
+++ trunk/gplots/man/plot.lm2.Rd	2009-05-08 22:01:12 UTC (rev 1319)
@@ -53,7 +53,7 @@
   \item{width}{Fraction of the data to use for plot smooths}
   \item{max.n}{Maximum number of points to display in plots}
 }
-\author{Gregory R. Warnes \email{wa...@bs...} and Nitin
+\author{Gregory R. Warnes \email{gr...@ra...} and Nitin
   Jain \email{nit...@pf...}}
 \examples{
 ctl <- rnorm(100, 4)

Modified: trunk/gplots/man/plotCI.Rd
===================================================================
--- trunk/gplots/man/plotCI.Rd	2009-05-08 21:56:38 UTC (rev 1318)
+++ trunk/gplots/man/plotCI.Rd	2009-05-08 22:01:12 UTC (rev 1319)
@@ -115,7 +115,7 @@
   Sep. 20, 1997.  Enhanced version posted to r-help by Ben Bolker
   \email{be...@zo...} on Apr. 16, 2001.  This version was modified
   and extended by Gregory R. Warnes
-  \email{wa...@bs...}.  Additional changes
+  \email{gr...@ra...}.  Additional changes
   suggested by Martin Maechler \email{mae...@st...}
   integrated on July 29, 2004.
   }

Modified: trunk/gplots/man/plotmeans.Rd
===================================================================
--- trunk/gplots/man/plotmeans.Rd	2009-05-08 21:56:38 UTC (rev 1318)
+++ trunk/gplots/man/plotmeans.Rd	2009-05-08 22:01:12 UTC (rev 1319)
@@ -137,7 +137,7 @@
   
 }
 
-\author{Gregory R. Warnes \email{wa...@bs...}}
+\author{Gregory R. Warnes \email{gr...@ra...}}
 
 \seealso{\code{\link{plotCI}}, \code{\link{boxplot}}}
 

Modified: trunk/gplots/man/residplot.Rd
===================================================================
--- trunk/gplots/man/residplot.Rd	2009-05-08 21:56:38 UTC (rev 1318)
+++ trunk/gplots/man/residplot.Rd	2009-05-08 22:01:12 UTC (rev 1319)
@@ -20,5 +20,5 @@
  These functions are undocumented.  Some are internal and not intended
    for direct use.  Others simply haven't been documented yet.
    }
-\author{Gregory R. Warnes \email{wa...@bs...}}
+\author{Gregory R. Warnes \email{gr...@ra...}}
 \keyword{misc}

Modified: trunk/gplots/man/sinkplot.Rd
===================================================================
--- trunk/gplots/man/sinkplot.Rd	2009-05-08 21:56:38 UTC (rev 1318)
+++ trunk/gplots/man/sinkplot.Rd	2009-05-08 22:01:12 UTC (rev 1319)
@@ -32,7 +32,7 @@
 \references{Functionality requested by Kevin Wright
    \email{kw...@es...} in the R-devel newlist posting
    \url{https://www.stat.math.ethz.ch/pipermail/r-devel/2004-January/028483.html}}
-\author{ Gregory R. Warnes \email{wa...@bs...}  }
+\author{ Gregory R. Warnes \email{gr...@ra...}  }
 \seealso{ \code{\link[utils]{capture.output}}, \code{\link{textplot}} }
 \examples{
 \dontrun{

Modified: trunk/gplots/man/smartlegend.Rd
===================================================================
--- trunk/gplots/man/smartlegend.Rd	2009-05-08 21:56:38 UTC (rev 1318)
+++ trunk/gplots/man/smartlegend.Rd	2009-05-08 22:01:12 UTC (rev 1319)
@@ -23,7 +23,7 @@
 \value{
   Same as \code{legend}
 }
-\author{Gregory R. Warnes \email{wa...@bs...} }
+\author{Gregory R. Warnes \email{gr...@ra...} }
 \seealso{ \code{\link[base]{legend}} }
 \examples{
 

Modified: trunk/gplots/man/space.Rd
===================================================================
--- trunk/gplots/man/space.Rd	2009-05-08 21:56:38 UTC (rev 1318)
+++ trunk/gplots/man/space.Rd	2009-05-08 22:01:12 UTC (rev 1319)
@@ -63,7 +63,7 @@
   \item{x}{(modified) x location for each input point}
   \item{y}{y location of each input point}
 }
-\author{ Gregory R. Warnes \email{wa...@bs...} }
+\author{ Gregory R. Warnes \email{gr...@ra...} }
 \seealso{ \code{\link{jitter}}, \code{\link[base]{sunflowerplot}} }
 
 \examples{

Modified: trunk/gplots/man/textplot.Rd
===================================================================
--- trunk/gplots/man/textplot.Rd	2009-05-08 21:56:38 UTC (rev 1318)
+++ trunk/gplots/man/textplot.Rd	2009-05-08 22:01:12 UTC (rev 1319)
@@ -79,7 +79,7 @@
 \value{
   The character scaling factor (\code{cex}) used.
 }
-\author{Gregory R. Warnes \email{wa...@bs...}}
+\author{Gregory R. Warnes \email{gr...@ra...}}
 \seealso{ \code{\link{plot}}, \code{\link{text}}, 
           \code{\link[utils]{capture.output}} 
         }

Modified: trunk/gplots/man/wapply.Rd
===================================================================
--- trunk/gplots/man/wapply.Rd	2009-05-08 21:56:38 UTC (rev 1318)
+++ trunk/gplots/man/wapply.Rd	2009-05-08 22:01:12 UTC (rev 1319)
@@ -103,7 +103,7 @@
   \item{x }{x location'}
   \item{y }{Result of applying \code{fun} to the window about each x location}
 }
-\author{ Gregory R. Warnes \email{wa...@bs...}
+\author{ Gregory R. Warnes \email{gr...@ra...}
   }
 \examples{
 


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[R-gregmisc-users] SF.net SVN: r-gregmisc:[1441] trunk/gplots/man

From: <wa...@us...> - 2010-06-11 03:12:00

Revision: 1441
          http://r-gregmisc.svn.sourceforge.net/r-gregmisc/?rev=1441&view=rev
Author:   warnes
Date:     2010-06-11 03:11:54 +0000 (Fri, 11 Jun 2010)

Log Message:
-----------
Update Greg's email address

Modified Paths:
--------------
    trunk/gplots/man/balloonplot.Rd
    trunk/gplots/man/bandplot.Rd
    trunk/gplots/man/boxplot.n.Rd
    trunk/gplots/man/colorpanel.Rd
    trunk/gplots/man/hist2d.Rd
    trunk/gplots/man/ooplot.Rd
    trunk/gplots/man/overplot.Rd
    trunk/gplots/man/plot.lm2.Rd
    trunk/gplots/man/plotCI.Rd
    trunk/gplots/man/plotmeans.Rd
    trunk/gplots/man/residplot.Rd
    trunk/gplots/man/sinkplot.Rd
    trunk/gplots/man/smartlegend.Rd
    trunk/gplots/man/space.Rd
    trunk/gplots/man/textplot.Rd
    trunk/gplots/man/wapply.Rd

Modified: trunk/gplots/man/balloonplot.Rd
===================================================================
--- trunk/gplots/man/balloonplot.Rd	2010-06-11 03:11:16 UTC (rev 1440)
+++ trunk/gplots/man/balloonplot.Rd	2010-06-11 03:11:54 UTC (rev 1441)
@@ -118,7 +118,7 @@
 \references{Function inspired by question posed on R-help by Ramon
   Alonso-Allende \email{al...@cn...}.}
 
-\author{ Gregory R. Warnes \email{gr...@ra...} }
+\author{ Gregory R. Warnes \email{gr...@wa...} }
 
 \seealso{ \code{\link{plot.table}} }
 

Modified: trunk/gplots/man/bandplot.Rd
===================================================================
--- trunk/gplots/man/bandplot.Rd	2010-06-11 03:11:16 UTC (rev 1440)
+++ trunk/gplots/man/bandplot.Rd	2010-06-11 03:11:54 UTC (rev 1441)
@@ -60,7 +60,7 @@
 \value{
   Invisibly returns a list containing the x,y points plotted for each line.
 }
-\author{ Gregory R. Warnes \email{gr...@ra...}
+\author{ Gregory R. Warnes \email{gr...@wa...}
 }
 \seealso{ \code{\link{wapply}}, \code{\link{lowess}}}
 \examples{

Modified: trunk/gplots/man/boxplot.n.Rd
===================================================================
--- trunk/gplots/man/boxplot.n.Rd	2010-06-11 03:11:16 UTC (rev 1440)
+++ trunk/gplots/man/boxplot.n.Rd	2010-06-11 03:11:54 UTC (rev 1441)
@@ -38,7 +38,7 @@
   \item{shrink}{ value to shrink character size (cex) when annotating.}
   \item{textcolor}{ text color. }
 }
-\author{ Gregory R. Warnes \email{gr...@ra...}}
+\author{ Gregory R. Warnes \email{gr...@wa...}}
 \seealso{ \code{\link{boxplot}}, \code{\link{text}}}
 
 \examples{

Modified: trunk/gplots/man/colorpanel.Rd
===================================================================
--- trunk/gplots/man/colorpanel.Rd	2010-06-11 03:11:16 UTC (rev 1440)
+++ trunk/gplots/man/colorpanel.Rd	2010-06-11 03:11:54 UTC (rev 1441)
@@ -42,7 +42,7 @@
 \value{
   Vector of HTML-style RGB colors.
 }
-\author{ Gregory R. Warnes \email{gr...@ra...} }
+\author{ Gregory R. Warnes \email{gr...@wa...} }
 \seealso{ \code{\link{colors} } }
 \examples{
 

Modified: trunk/gplots/man/hist2d.Rd
===================================================================
--- trunk/gplots/man/hist2d.Rd	2010-06-11 03:11:16 UTC (rev 1440)
+++ trunk/gplots/man/hist2d.Rd	2010-06-11 03:11:54 UTC (rev 1441)
@@ -63,7 +63,7 @@
   \item{y}{lower y limit of each bin}
 }
 %\references{ ~put references to the literature/web site here ~ }
-\author{ Gregory R. Warnes \email{gr...@ra...}}
+\author{ Gregory R. Warnes \email{gr...@wa...}}
 %\note{ ~~further notes~~ }
 
 \seealso{ \code{\link{image}}, \code{\link{persp}}, \code{\link{hist}} }

Modified: trunk/gplots/man/ooplot.Rd
===================================================================
--- trunk/gplots/man/ooplot.Rd	2010-06-11 03:11:16 UTC (rev 1440)
+++ trunk/gplots/man/ooplot.Rd	2010-06-11 03:11:54 UTC (rev 1441)
@@ -157,7 +157,7 @@
   midpoints of each \emph{group} of bars, see example.
 }
 \author{Lodewijk Bonebakker \email{bon...@co...} with modifications
-  by Gregory R. Warnes \email{gr...@ra...}.
+  by Gregory R. Warnes \email{gr...@wa...}.
   Based on barplot2().
   }
 \seealso{ \code{\link{plot}}, \code{\link{boxplot}} }

Modified: trunk/gplots/man/overplot.Rd
===================================================================
--- trunk/gplots/man/overplot.Rd	2010-06-11 03:11:16 UTC (rev 1440)
+++ trunk/gplots/man/overplot.Rd	2010-06-11 03:11:54 UTC (rev 1441)
@@ -55,7 +55,7 @@
 \value{
   A copy of the data split by the conditioning variable.
 }
-\author{ Gregory R. Warnes \email{gr...@ra...} }
+\author{ Gregory R. Warnes \email{gr...@wa...} }
 \seealso{
   \code{\link{interaction.plot}},
   \code{\link{coplot}} for alternative visualizations of 3-way data.}

Modified: trunk/gplots/man/plot.lm2.Rd
===================================================================
--- trunk/gplots/man/plot.lm2.Rd	2010-06-11 03:11:16 UTC (rev 1440)
+++ trunk/gplots/man/plot.lm2.Rd	2010-06-11 03:11:54 UTC (rev 1441)
@@ -53,7 +53,7 @@
   \item{width}{Fraction of the data to use for plot smooths}
   \item{max.n}{Maximum number of points to display in plots}
 }
-\author{Gregory R. Warnes \email{gr...@ra...} and Nitin
+\author{Gregory R. Warnes \email{gr...@wa...} and Nitin
   Jain \email{nit...@pf...}}
 \examples{
 ctl <- rnorm(100, 4)

Modified: trunk/gplots/man/plotCI.Rd
===================================================================
--- trunk/gplots/man/plotCI.Rd	2010-06-11 03:11:16 UTC (rev 1440)
+++ trunk/gplots/man/plotCI.Rd	2010-06-11 03:11:54 UTC (rev 1441)
@@ -115,7 +115,7 @@
   Sep. 20, 1997.  Enhanced version posted to r-help by Ben Bolker
   \email{be...@zo...} on Apr. 16, 2001.  This version was modified
   and extended by Gregory R. Warnes
-  \email{gr...@ra...}.  Additional changes
+  \email{gr...@wa...}.  Additional changes
   suggested by Martin Maechler \email{mae...@st...}
   integrated on July 29, 2004.
   }

Modified: trunk/gplots/man/plotmeans.Rd
===================================================================
--- trunk/gplots/man/plotmeans.Rd	2010-06-11 03:11:16 UTC (rev 1440)
+++ trunk/gplots/man/plotmeans.Rd	2010-06-11 03:11:54 UTC (rev 1441)
@@ -137,7 +137,7 @@
   
 }
 
-\author{Gregory R. Warnes \email{gr...@ra...}}
+\author{Gregory R. Warnes \email{gr...@wa...}}
 
 \seealso{\code{\link{plotCI}}, \code{\link{boxplot}}}
 

Modified: trunk/gplots/man/residplot.Rd
===================================================================
--- trunk/gplots/man/residplot.Rd	2010-06-11 03:11:16 UTC (rev 1440)
+++ trunk/gplots/man/residplot.Rd	2010-06-11 03:11:54 UTC (rev 1441)
@@ -20,5 +20,5 @@
  These functions are undocumented.  Some are internal and not intended
    for direct use.  Others simply haven't been documented yet.
    }
-\author{Gregory R. Warnes \email{gr...@ra...}}
+\author{Gregory R. Warnes \email{gr...@wa...}}
 \keyword{misc}

Modified: trunk/gplots/man/sinkplot.Rd
===================================================================
--- trunk/gplots/man/sinkplot.Rd	2010-06-11 03:11:16 UTC (rev 1440)
+++ trunk/gplots/man/sinkplot.Rd	2010-06-11 03:11:54 UTC (rev 1441)
@@ -32,7 +32,7 @@
 \references{Functionality requested by Kevin Wright
    \email{kw...@es...} in the R-devel newlist posting
    \url{https://www.stat.math.ethz.ch/pipermail/r-devel/2004-January/028483.html}}
-\author{ Gregory R. Warnes \email{gr...@ra...}  }
+\author{ Gregory R. Warnes \email{gr...@wa...}  }
 \seealso{ \code{\link[utils]{capture.output}}, \code{\link{textplot}} }
 \examples{
 \dontrun{

Modified: trunk/gplots/man/smartlegend.Rd
===================================================================
--- trunk/gplots/man/smartlegend.Rd	2010-06-11 03:11:16 UTC (rev 1440)
+++ trunk/gplots/man/smartlegend.Rd	2010-06-11 03:11:54 UTC (rev 1441)
@@ -23,7 +23,7 @@
 \value{
   Same as \code{legend}
 }
-\author{Gregory R. Warnes \email{gr...@ra...} }
+\author{Gregory R. Warnes \email{gr...@wa...} }
 \seealso{ \code{\link{legend}} }
 \examples{
 

Modified: trunk/gplots/man/space.Rd
===================================================================
--- trunk/gplots/man/space.Rd	2010-06-11 03:11:16 UTC (rev 1440)
+++ trunk/gplots/man/space.Rd	2010-06-11 03:11:54 UTC (rev 1441)
@@ -63,7 +63,7 @@
   \item{x}{(modified) x location for each input point}
   \item{y}{y location of each input point}
 }
-\author{ Gregory R. Warnes \email{gr...@ra...} }
+\author{ Gregory R. Warnes \email{gr...@wa...} }
 \seealso{ \code{\link{jitter}}, \code{\link{sunflowerplot}} }
 
 \examples{

Modified: trunk/gplots/man/textplot.Rd
===================================================================
--- trunk/gplots/man/textplot.Rd	2010-06-11 03:11:16 UTC (rev 1440)
+++ trunk/gplots/man/textplot.Rd	2010-06-11 03:11:54 UTC (rev 1441)
@@ -79,7 +79,7 @@
 \value{
   The character scaling factor (\code{cex}) used.
 }
-\author{Gregory R. Warnes \email{gr...@ra...}}
+\author{Gregory R. Warnes \email{gr...@wa...}}
 \seealso{ \code{\link{plot}}, \code{\link{text}}, 
           \code{\link[utils]{capture.output}} 
         }

Modified: trunk/gplots/man/wapply.Rd
===================================================================
--- trunk/gplots/man/wapply.Rd	2010-06-11 03:11:16 UTC (rev 1440)
+++ trunk/gplots/man/wapply.Rd	2010-06-11 03:11:54 UTC (rev 1441)
@@ -103,7 +103,7 @@
   \item{x }{x location'}
   \item{y }{Result of applying \code{fun} to the window about each x location}
 }
-\author{ Gregory R. Warnes \email{gr...@ra...}
+\author{ Gregory R. Warnes \email{gr...@wa...}
   }
 \examples{
 


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[R-gregmisc-users] SF.net SVN: r-gregmisc:[1503] trunk/gplots/man

From: <wa...@us...> - 2011-09-02 18:23:17

Revision: 1503
          http://r-gregmisc.svn.sourceforge.net/r-gregmisc/?rev=1503&view=rev
Author:   warnes
Date:     2011-09-02 18:23:11 +0000 (Fri, 02 Sep 2011)
Log Message:
-----------
Add necessary alias statment to man files for for 'hist2d' and 'ci2d'
print methods.

Modified Paths:
--------------
    trunk/gplots/man/ci2d.Rd
    trunk/gplots/man/hist2d.Rd

Modified: trunk/gplots/man/ci2d.Rd
===================================================================
--- trunk/gplots/man/ci2d.Rd	2011-09-02 18:20:15 UTC (rev 1502)
+++ trunk/gplots/man/ci2d.Rd	2011-09-02 18:23:11 UTC (rev 1503)
@@ -1,6 +1,7 @@
 % $Id$
 \name{ci2d}
 \alias{ci2d}
+\alias{print.ci2d}
 \title{
   Create 2-dimensional empirical confidence regions
 }

Modified: trunk/gplots/man/hist2d.Rd
===================================================================
--- trunk/gplots/man/hist2d.Rd	2011-09-02 18:20:15 UTC (rev 1502)
+++ trunk/gplots/man/hist2d.Rd	2011-09-02 18:23:11 UTC (rev 1503)
@@ -1,6 +1,7 @@
 % $Id$
 \name{hist2d}
 \alias{hist2d}
+\alias{print.hist2d}
 \title{ Compute and Plot a 2-Dimensional Histogram }
 \description{
   Compute and plot a 2-dimensional histogram.

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[R-gregmisc-users] SF.net SVN: r-gregmisc:[2002] trunk/gplots/man

From: <wa...@us...> - 2015-05-01 17:20:08

Revision: 2002
          http://sourceforge.net/p/r-gregmisc/code/2002
Author:   warnes
Date:     2015-05-01 17:20:05 +0000 (Fri, 01 May 2015)
Log Message:
-----------
Correct URLs in man pages.

Modified Paths:
--------------
    trunk/gplots/man/heatmap.2.Rd
    trunk/gplots/man/sinkplot.Rd

Modified: trunk/gplots/man/heatmap.2.Rd
===================================================================
--- trunk/gplots/man/heatmap.2.Rd	2015-05-01 16:34:19 UTC (rev 2001)
+++ trunk/gplots/man/heatmap.2.Rd	2015-05-01 17:20:05 UTC (rev 2002)
@@ -276,7 +276,7 @@
   The default colors range from red to white (\code{heat.colors}) and
   are not pretty.  Consider using enhancements such as the
   \pkg{RColorBrewer} package,
-  \url{http://cran.r-project.org/src/contrib/PACKAGES.html#RColorBrewer}
+  \url{http://cran.r-project.org/web/packages/RColorBrewer}
   to select better colors.
 
   By default four components will be displayed in the plot.  At the top

Modified: trunk/gplots/man/sinkplot.Rd
===================================================================
--- trunk/gplots/man/sinkplot.Rd	2015-05-01 16:34:19 UTC (rev 2001)
+++ trunk/gplots/man/sinkplot.Rd	2015-05-01 17:20:05 UTC (rev 2002)
@@ -31,7 +31,8 @@
 
 \references{Functionality requested by Kevin Wright
    \email{kw...@es...} in the R-devel newlist posting
-   \url{https://www.stat.math.ethz.ch/pipermail/r-devel/2004-January/028483.html}}
+   \url{https://stat.ethz.ch/pipermail/r-devel/2004-January/028483.html}
+ }
 \author{ Gregory R. Warnes \email{gr...@wa...}  }
 \seealso{ \code{\link[utils]{capture.output}}, \code{\link{textplot}} }
 \examples{

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[R-gregmisc-users] SF.net SVN: r-gregmisc:[2007] trunk/gplots/man

From: <wa...@us...> - 2015-05-01 17:47:44

Revision: 2007
          http://sourceforge.net/p/r-gregmisc/code/2007
Author:   warnes
Date:     2015-05-01 17:47:42 +0000 (Fri, 01 May 2015)
Log Message:
-----------
Mark boxplot.n and() plot.lm2() as defunct.

Modified Paths:
--------------
    trunk/gplots/man/gplots-deprecated.Rd
    trunk/gplots/man/lmplot2.Rd

Added Paths:
-----------
    trunk/gplots/man/gplots-defunct.Rd

Removed Paths:
-------------
    trunk/gplots/man/smartlegend.Rd

Added: trunk/gplots/man/gplots-defunct.Rd
===================================================================
--- trunk/gplots/man/gplots-defunct.Rd	                        (rev 0)
+++ trunk/gplots/man/gplots-defunct.Rd	2015-05-01 17:47:42 UTC (rev 2007)
@@ -0,0 +1,51 @@
+\name{gplots-deprecated}
+\alias{boxplot.n}
+\alias{plot.lm2}
+\title{Defunct functions}
+\description{
+  These funcntion are defunct and have been removed from the gplots package.
+}
+\usage{
+   boxplot.n(..., top=FALSE, shrink=1, textcolor=NULL)
+   plot.lm2(
+            x,
+            which = 1:5,
+            caption = c("Residuals vs Fitted", "Normal Q-Q plot",
+              "Scale-Location plot", "Cook's distance plot"),
+            panel = panel.smooth,
+            sub.caption = deparse(x$call),
+            main = "",
+            ask,
+            ...,
+            id.n = 3,
+            labels.id = names(residuals(x)),
+            cex.id = 0.75,
+            band=TRUE,
+            rug=TRUE,
+            width=1/10,
+            max.n=5000
+            )
+}
+\arguments{
+  \item{\dots}{see man page for the corresponding replacement function}
+  \item{top, shrink, textcolor}{See man page for
+    \code{\link{boxplot2}}.}
+  \item{x, which, caption, panel, sub.caption, main, ask, id.n,
+    labels.id, cex.id, band, rug, width, max.n}{See man page for
+    \code{\link{lmplot2}}.}
+}
+\details{
+These functions are no longer available.  Please refer to the manual page
+for the replacement function:
+  \itemize{
+    \item \code{boxplot.n} has been replaced by \code{\link{boxplot2}}
+    \item \code{plot.lm2} has been replaced by \code{\link{lmplot2}}
+  }
+}
+\author{Gregory R. Warnes \email{gr...@wa...}}
+\seealso{
+  \code{\link{boxplot2}},
+  \code{\link{lmplot2}},
+  \code{\link[base]{Defunct}}
+}
+\keyword{misc}

Modified: trunk/gplots/man/gplots-deprecated.Rd
===================================================================
--- trunk/gplots/man/gplots-deprecated.Rd	2015-05-01 17:44:30 UTC (rev 2006)
+++ trunk/gplots/man/gplots-deprecated.Rd	2015-05-01 17:47:42 UTC (rev 2007)
@@ -1,52 +1,30 @@
 \name{gplots-deprecated}
-\alias{boxplot.n}
-\alias{plot.lm2}
+\alias{deprecated}
 \title{Deprecated functions}
 \description{
   These funcntion have been deprecated and will be removed in future
   releases of gplots.
 }
 \usage{
-   boxplot.n(..., top=FALSE, shrink=1, textcolor=NULL)
-   plot.lm2(
-            x,
-            which = 1:5,
-            caption = c("Residuals vs Fitted", "Normal Q-Q plot",
-              "Scale-Location plot", "Cook's distance plot"),
-            panel = panel.smooth,
-            sub.caption = deparse(x$call),
-            main = "",
-            ask,
+smartlegend(x = c("left", "center", "right"),
+            y = c("top", "center", "bottom"),
             ...,
-            id.n = 3,
-            labels.id = names(residuals(x)),
-            cex.id = 0.75,
-            band=TRUE,
-            rug=TRUE,
-            width=1/10,
-            max.n=5000
-            )
+            inset = 0.05)
 }
 \arguments{
-  \item{\dots}{see man page for the corresponding replacement function}
-  \item{top, shrink, textcolor}{See man page for
-    \code{\link{boxplot2}}.}
-  \item{x, which, caption, panel, sub.caption, main, ask, id.n,
-    labels.id, cex.id, band, rug, width, max.n}{See man page for
-    \code{\link{lmplot2}}.}
+  \item{x, y, inset, \dots}{see man page for the corresponding replacement function}
 }
 \details{
 These functions have been deprecated.  Please refer to the manual page
 for the replacement function:
   \itemize{
-    \item \code{boxplot.n} has been replaced by \code{\link{boxplot2}} 
-    \item \code{plot.lm2} has been replaced by \code{\link{lmplot2}}
+    \item \code{smartlegend} is no longer needed because relative
+    positioning has been implemented in graphics::legend().
   }
 }
 \author{Gregory R. Warnes \email{gr...@wa...}}
 \seealso{
-  \code{\link{boxplot2}},
-  \code{\link{lmplot2}},
+  \code{\link{legend}},
   \code{\link[base]{Deprecated}}
 }
 \keyword{misc}

Modified: trunk/gplots/man/lmplot2.Rd
===================================================================
--- trunk/gplots/man/lmplot2.Rd	2015-05-01 17:44:30 UTC (rev 2006)
+++ trunk/gplots/man/lmplot2.Rd	2015-05-01 17:47:42 UTC (rev 2007)
@@ -1,5 +1,6 @@
 \name{lmplot2}
 \alias{lmplot2}
+\alais{plot.lm2}
 \title{
   Plots to assess the goodness of fit for the linear model objects
 }
@@ -29,7 +30,7 @@
 }
 \arguments{
   \item{x}{lm object}
-  \item{which}{Numerical values between 1 and 5, indicating which plots 
+  \item{which}{Numerical values between 1 and 5, indicating which plots
     to be shown. The codes are:
     \describe{
       \item{1}{Fitted vs residuals}
@@ -43,7 +44,7 @@
   \item{panel}{ function to draw on the existing plot}
   \item{sub.caption}{ SubCaption for the plots }
   \item{main}{Main title of the plot}
-  \item{ask}{whether interactive graphics or postscript }
+  \item{ask}{whether interactive graphics}
   \item{\dots}{ parameters passed to \code{lmplot2}. }
   \item{id.n}{ integer value, less than or equal to residuals of lm object }
   \item{labels.id}{Names of the residuals of the lm object}
@@ -55,8 +56,8 @@
   \item{max.n}{Maximum number of points to display in plots}
 }
 \note{
-  This function replaces \code{boxplot.n}, which has been deprecated
-  avoid potential problems with S3 method dispatching.
+  This function replaces \code{plot.lm2}, which has been deprecated
+  to avoid potential problems with S3 method dispatching.
 }
 \author{Gregory R. Warnes \email{gr...@wa...} and Nitin
   Jain \email{nit...@pf...}}

Deleted: trunk/gplots/man/smartlegend.Rd
===================================================================
--- trunk/gplots/man/smartlegend.Rd	2015-05-01 17:44:30 UTC (rev 2006)
+++ trunk/gplots/man/smartlegend.Rd	2015-05-01 17:47:42 UTC (rev 2007)
@@ -1,45 +0,0 @@
-\name{smartlegend}
-\alias{smartlegend}
-\title{Place a legend in a specified logical ("top","bottom", "left",
-  "right", etc) location on a plot.}
-\description{
-  This function places a legend in a specified logical ("top","bottom", "left",
-  "right", etc) location on a plot.
-}
-\usage{
-smartlegend(x = c("left", "center", "right"),
-            y = c("top", "center", "bottom"),
-            ..., inset = 0.05)
-}
-\arguments{
-  \item{x}{horizontal location on the plot.  One of "left", "center" or
-    "right".}
-  \item{y}{vertical location on the plot.  One of "top", "center", or
-    "bottom".}
-  \item{\dots}{arguments for \code{legend}}
-  \item{inset}{inset distance from the margin as a fraction of the plot
-    region.}
-}
-\value{
-  Same as \code{legend}
-}
-\note{
-  This function is deprecated because \code{\link{legend}} has
-  implemented relative positioning (e.g. \code{x="topright"}).
-}
-\author{Gregory R. Warnes \email{gr...@wa...} }
-\seealso{ \code{\link{legend}} }
-\examples{
-
-x <- rnorm(100)
-y <- rnorm(100, x^2 )
-plot(x,y)
-abline( lm(y~x), col="red", lty=1, type="b") # regression fit
-lines( lowess(y~x), col="blue", lty=2, type="b") # lowess fit
-
-smartlegend(x="center", y="top",
-            c("Regression","Locally Linear Smooth"),
-            col=c("red","blue"), lty=1:2)
-
-}
-\keyword{hplot}

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