Thread: [R-gregmisc-users] SF.net SVN: r-gregmisc:[1687] trunk/gregmisc

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Revision: 1687
          http://sourceforge.net/p/r-gregmisc/code/1687
Author:   warnes
Date:     2013-06-28 21:41:23 +0000 (Fri, 28 Jun 2013)
Log Message:
-----------
Move NEWS to inst/NEWS

Added Paths:
-----------
    trunk/gregmisc/inst/NEWS

Removed Paths:
-------------
    trunk/gregmisc/NEWS

Deleted: trunk/gregmisc/NEWS
===================================================================

--- trunk/gregmisc/NEWS	2013-06-28 21:37:23 UTC (rev 1686)
+++ trunk/gregmisc/NEWS	2013-06-28 21:41:23 UTC (rev 1687)
@@ -1,259 +0,0 @@
-
-This file provides a brief list of major feature enhancements
-associated with each package release. For a more detailed list of
-changes see the ChangeLog file.
-
-Version 2.0.6
--------------
-
-Bug fixes:
-
-        * gplots::overplot() - Troels Ring <tr...@gv...> noted that
-          overplot() was reporting 
-		Error in eval(expr, envir, enclos) : couldn't find
-		function "lowess.formula"
-	  Fixed by changing reference to gplots:::lowess.formula in 
-          panel.overplot.
-
-Version 2.0.5
--------------
-
-New functions:
-
-	* gmodels::coefFrame() - Fits a model to each subgroup defined by
- 	  \code{by}, then returns a data frame with one row for each
-	  fit and one column for each parameter.
-
-Function changes:
-
-	* frameApply() and drop.levels() have been moved to the
-	  gdata package from the gtools package.
-
-	* gtools::quantcut() now properly handles cases where
-          where more than one quantile obtains the same value.
-
-Bug fixes:
-
-	* Minor change to avoid 'R CMD check' warnings generated by
-	  example code for the depreciated gdata::elem() function.
-
-	* Fixed a bug in gtools::mixedsort when only a single value
- 	  is provided.
-
-
-Version 2.0.4
--------------
-
-New functions:
-
-	* ConvertMedUnits.R - Convert Medical measurements between
-	  International Standard (SI) and US 'Conventional' Units.
-
-New data:
-
-	* MedUnits data set provides conversions between American
-	  US 'Conventional' and Standard Intertional (SI) medical
-	  units.
-
-Bug fixes:
-
-	* Fix behavior of ll() with some data types.
-
-	* Minor update to remove 'R CMD check' warnings.
-
-New sub-package:
-
-	* Add a 'gregmisc' subpackage.  This package simply loads
-	  all of the other packages.  This should help individuals
-	  who are used to the old gregmisc package..
-
-
-Version 2.0.3
--------------
-
-New functions:
-
-	* gdata::unmatrix - function for converting a matrix into a
-	  well-labeled vector
-
-	* gtools::frameApply - Apply a functon the the rows of a data
-	  frame.
-
-	* gtools::drop.levels remove unused factor levels from the
-	  factors contained in a data frame
-
-Feature enhancements:
-
-
-        * gdata::ll -  Now handles list-like objects, including data
-          frames
-
-	* gmodels::CrossTable - Added 'SPSS' format, as suggested by
-  	  Dirk Enzmann
-
-	* gplots::heatmap.2 - 
-
-             - Add new parameters for controlling color key - 
-
-             - New parameter to allow control of height and width of
-               separator box
-
-	* gmodels::CrossTable - Show Chisquare contribution of each
-	  cell, suggested by Greg Snow.
-
-	* gdata::read.xls - Add ability to specify the perl executable
-	  and path.
-
-Bug fixes:
-
-	* gplots::heatmap2 - 
-
-	     - cell note layout was incorrect
-
-	     - Fix handling of rowsep::colsep.
-
-	     - Ignore missing values when computing symmetric range.
-
-	* gplots::bandplot - Fix problem in passing graphical parameters
-
- 	* add import of 'reorder' and 'na.omit' from 'stats' package
- 	  to satisfy packages depending on us.
-
-Other changes:
-
-	* gplots::textplot - Code can be simplified because R now
-	  supports selecting a fixed width font.
-
-	* gplots::plotmeans - Add more extensive example.
-
-        * gdata::elem - depreciated in favor of gdata::ll
-
-
-Version 2.0.0
--------------
-
-First release as a package bundle.  Functions are now segregated into four topic-specific packages:
-
-	gplots
-	gmodels
-	gtool
-	gmisc
-
-Thanks to Nitin Jain for doing most of the work of the conversion to
-a package bundle.
-
-
-Version 1.11.2
---------------
-
-- Simpify and fix the build process on both *nix and Windows by simply
-  providing pre-built perl modules.
-
-
-Version 1.11.1
---------------
-
-- Fix building of of gregmisc on Windows:
-
-  Runtime Requirements:
-
-	ActiveState perl in the PATH
-
-  Build Requirements:
-
-	ActiveState perl and Microsoft's NMAKE utility in the PATH
-        (A self extracting archive file containing NMAKE is available from
-	<ftp://ftp.microsoft.com/Softlib/MSLFILES/nmake15.exe>.)
-
-  This was tested on Windows2000 Pro with ActivePerl-5.8.3.809-MSWin32-x86.msi
-
-- (Hopefully) Fix building on Linux with Perl 5.8.0.  Perl 5.8.3 is
-  reported to work without error on Linux, as does perl 5.6.1 on Solaris.
-
-Version 1.11.0
---------------
-
-- Bump version number to 1.11.0 to better reflect the production
-  status of the package.
-
-- Add read.xls(), a function to read Microsoft Excel files by
-  translating them to csv files via the xls2csv.pl script, which has
-  also been added to the package.  I've provided scripts to run xls2csv:
-
-     Unix systems: $PACKAGE$/gregmisc/bin/xls2csv
-     MS-Windows:   $PACKAGE$/gregmisc/bin/xls2csv.bat
-
-  or you can execute the perl code directly:
-
-     $PACKAGE$/gregmisc/perl/xls2csv.pl
-
-  The perl script explicitly loads its libraries from the installed
-  gregmisc so you don't have to worry about paths.  To get usage and
-  parameter information, simply execute the script via any of the
-  above methods without providing any command-line arguments.
-
-
-- Improvements to CrossTable() by Marc Schwartz <MSc...@Me...>
-
-- Improvements to ooplot() by Lodewijk Bonebakker <bon...@co...>
-
-- plotCI() and plotmeans() now have improved argument handling.
-
-- The running() function now has an additional parameter `simplify'
-  which controls whether the returned values are simplified into a
-  vector/matrix or left as a list.
-
-- A makefile that will download and attempt to install all available
-  packages from CRAN and Bioconductor is now provided in
-  $PACKAGE$/gregmisc/tools/
-
-- space() can now space points along the 'y' dimension.
-
-- Fix an error in the permutations code for repeats.allow=T and r>2.
-  Both the bug report and fix are from Elizabeth Purdom
-  <ep...@st...>.
-
-- Various fixes for compatibility with R 1.9.X.
-
-Version 0.10.2
---------------
-
-- Fixed latex warning.
-
-- Fixed smartlegend() positioning when x and/or y axis are log-scale.
-
-- Add function remove.vars().
-
-Version 0.10.1
---------------
-
-- Fixed bug in textplot() reported by Kevin Wright  <kevin.d.wright at pioneer
-  dot com>.
-
-Version 0.10.0
---------------
-
-- Now works with and requires R 1.9.0
-
-- Added ooplot() function that mimics Open-Office style plots.
-  Contributed by Lodewijk Bonebakker <bon...@co...>
-
-- Fixed bug in running() that arose when the called function
-  really neaded a minimum number of elements to work on.
-
-- Added several new features to running(), it can now allow sequences
-  shorter than the requested width to be present at the front, the back,
-  or on both sides of the full lenth sequences.  This allows one to
-  align the data so that the window is before, after, or around the
-  indexed point.
-
-- Add enhancements to estimable() provided by S\xF8ren H\xF8jsgaard
-  <so...@ag...>:
-
-  The estimable function now
-  1) also works on geese and gee objects and
-  2) can test hypotheses af the forb L * beta = beta0 both as a
-     single Wald test and row-wise for each row in L.
-
-- Add colorpanel function, which generates a smoothly varying band of
-  colors over a three color range (lo, mid, high).

Copied: trunk/gregmisc/inst/NEWS (from rev 1649, trunk/gregmisc/NEWS)
===================================================================
--- trunk/gregmisc/inst/NEWS	                        (rev 0)
+++ trunk/gregmisc/inst/NEWS	2013-06-28 21:41:23 UTC (rev 1687)
@@ -0,0 +1,259 @@
+
+This file provides a brief list of major feature enhancements
+associated with each package release. For a more detailed list of
+changes see the ChangeLog file.
+
+Version 2.0.6
+-------------
+
+Bug fixes:
+
+        * gplots::overplot() - Troels Ring <tr...@gv...> noted that
+          overplot() was reporting 
+		Error in eval(expr, envir, enclos) : couldn't find
+		function "lowess.formula"
+	  Fixed by changing reference to gplots:::lowess.formula in 
+          panel.overplot.
+
+Version 2.0.5
+-------------
+
+New functions:
+
+	* gmodels::coefFrame() - Fits a model to each subgroup defined by
+ 	  \code{by}, then returns a data frame with one row for each
+	  fit and one column for each parameter.
+
+Function changes:
+
+	* frameApply() and drop.levels() have been moved to the
+	  gdata package from the gtools package.
+
+	* gtools::quantcut() now properly handles cases where
+          where more than one quantile obtains the same value.
+
+Bug fixes:
+
+	* Minor change to avoid 'R CMD check' warnings generated by
+	  example code for the depreciated gdata::elem() function.
+
+	* Fixed a bug in gtools::mixedsort when only a single value
+ 	  is provided.
+
+
+Version 2.0.4
+-------------
+
+New functions:
+
+	* ConvertMedUnits.R - Convert Medical measurements between
+	  International Standard (SI) and US 'Conventional' Units.
+
+New data:
+
+	* MedUnits data set provides conversions between American
+	  US 'Conventional' and Standard Intertional (SI) medical
+	  units.
+
+Bug fixes:
+
+	* Fix behavior of ll() with some data types.
+
+	* Minor update to remove 'R CMD check' warnings.
+
+New sub-package:
+
+	* Add a 'gregmisc' subpackage.  This package simply loads
+	  all of the other packages.  This should help individuals
+	  who are used to the old gregmisc package..
+
+
+Version 2.0.3
+-------------
+
+New functions:
+
+	* gdata::unmatrix - function for converting a matrix into a
+	  well-labeled vector
+
+	* gtools::frameApply - Apply a functon the the rows of a data
+	  frame.
+
+	* gtools::drop.levels remove unused factor levels from the
+	  factors contained in a data frame
+
+Feature enhancements:
+
+
+        * gdata::ll -  Now handles list-like objects, including data
+          frames
+
+	* gmodels::CrossTable - Added 'SPSS' format, as suggested by
+  	  Dirk Enzmann
+
+	* gplots::heatmap.2 - 
+
+             - Add new parameters for controlling color key - 
+
+             - New parameter to allow control of height and width of
+               separator box
+
+	* gmodels::CrossTable - Show Chisquare contribution of each
+	  cell, suggested by Greg Snow.
+
+	* gdata::read.xls - Add ability to specify the perl executable
+	  and path.
+
+Bug fixes:
+
+	* gplots::heatmap2 - 
+
+	     - cell note layout was incorrect
+
+	     - Fix handling of rowsep::colsep.
+
+	     - Ignore missing values when computing symmetric range.
+
+	* gplots::bandplot - Fix problem in passing graphical parameters
+
+ 	* add import of 'reorder' and 'na.omit' from 'stats' package
+ 	  to satisfy packages depending on us.
+
+Other changes:
+
+	* gplots::textplot - Code can be simplified because R now
+	  supports selecting a fixed width font.
+
+	* gplots::plotmeans - Add more extensive example.
+
+        * gdata::elem - depreciated in favor of gdata::ll
+
+
+Version 2.0.0
+-------------
+
+First release as a package bundle.  Functions are now segregated into four topic-specific packages:
+
+	gplots
+	gmodels
+	gtool
+	gmisc
+
+Thanks to Nitin Jain for doing most of the work of the conversion to
+a package bundle.
+
+
+Version 1.11.2
+--------------
+
+- Simpify and fix the build process on both *nix and Windows by simply
+  providing pre-built perl modules.
+
+
+Version 1.11.1
+--------------
+
+- Fix building of of gregmisc on Windows:
+
+  Runtime Requirements:
+
+	ActiveState perl in the PATH
+
+  Build Requirements:
+
+	ActiveState perl and Microsoft's NMAKE utility in the PATH
+        (A self extracting archive file containing NMAKE is available from
+	<ftp://ftp.microsoft.com/Softlib/MSLFILES/nmake15.exe>.)
+
+  This was tested on Windows2000 Pro with ActivePerl-5.8.3.809-MSWin32-x86.msi
+
+- (Hopefully) Fix building on Linux with Perl 5.8.0.  Perl 5.8.3 is
+  reported to work without error on Linux, as does perl 5.6.1 on Solaris.
+
+Version 1.11.0
+--------------
+
+- Bump version number to 1.11.0 to better reflect the production
+  status of the package.
+
+- Add read.xls(), a function to read Microsoft Excel files by
+  translating them to csv files via the xls2csv.pl script, which has
+  also been added to the package.  I've provided scripts to run xls2csv:
+
+     Unix systems: $PACKAGE$/gregmisc/bin/xls2csv
+     MS-Windows:   $PACKAGE$/gregmisc/bin/xls2csv.bat
+
+  or you can execute the perl code directly:
+
+     $PACKAGE$/gregmisc/perl/xls2csv.pl
+
+  The perl script explicitly loads its libraries from the installed
+  gregmisc so you don't have to worry about paths.  To get usage and
+  parameter information, simply execute the script via any of the
+  above methods without providing any command-line arguments.
+
+
+- Improvements to CrossTable() by Marc Schwartz <MSc...@Me...>
+
+- Improvements to ooplot() by Lodewijk Bonebakker <bon...@co...>
+
+- plotCI() and plotmeans() now have improved argument handling.
+
+- The running() function now has an additional parameter `simplify'
+  which controls whether the returned values are simplified into a
+  vector/matrix or left as a list.
+
+- A makefile that will download and attempt to install all available
+  packages from CRAN and Bioconductor is now provided in
+  $PACKAGE$/gregmisc/tools/
+
+- space() can now space points along the 'y' dimension.
+
+- Fix an error in the permutations code for repeats.allow=T and r>2.
+  Both the bug report and fix are from Elizabeth Purdom
+  <ep...@st...>.
+
+- Various fixes for compatibility with R 1.9.X.
+
+Version 0.10.2
+--------------
+
+- Fixed latex warning.
+
+- Fixed smartlegend() positioning when x and/or y axis are log-scale.
+
+- Add function remove.vars().
+
+Version 0.10.1
+--------------
+
+- Fixed bug in textplot() reported by Kevin Wright  <kevin.d.wright at pioneer
+  dot com>.
+
+Version 0.10.0
+--------------
+
+- Now works with and requires R 1.9.0
+
+- Added ooplot() function that mimics Open-Office style plots.
+  Contributed by Lodewijk Bonebakker <bon...@co...>
+
+- Fixed bug in running() that arose when the called function
+  really neaded a minimum number of elements to work on.
+
+- Added several new features to running(), it can now allow sequences
+  shorter than the requested width to be present at the front, the back,
+  or on both sides of the full lenth sequences.  This allows one to
+  align the data so that the window is before, after, or around the
+  indexed point.
+
+- Add enhancements to estimable() provided by S\xF8ren H\xF8jsgaard
+  <so...@ag...>:
+
+  The estimable function now
+  1) also works on geese and gee objects and
+  2) can test hypotheses af the forb L * beta = beta0 both as a
+     single Wald test and row-wise for each row in L.
+
+- Add colorpanel function, which generates a smoothly varying band of
+  colors over a three color range (lo, mid, high).

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Thread: [R-gregmisc-users] SF.net SVN: r-gregmisc:[1687] trunk/gregmisc

r-gregmisc-users