r-gregmisc-users

[R-gregmisc-users] SF.net SVN: r-gregmisc: [1010] trunk/gplots/tests/heatmap2Test.Rout.save

[<wa...@us...>]

Revision: 1010
          http://svn.sourceforge.net/r-gregmisc/?rev=1010&view=rev
Author:   warnes
Date:     2006-11-14 10:29:35 -0800 (Tue, 14 Nov 2006)

Log Message:
-----------
Update output file to match (trivial) changes in the test code.

Modified Paths:
--------------
    trunk/gplots/tests/heatmap2Test.Rout.save

Modified: trunk/gplots/tests/heatmap2Test.Rout.save
===================================================================
--- trunk/gplots/tests/heatmap2Test.Rout.save	2006-11-14 18:13:02 UTC (rev 1009)
+++ trunk/gplots/tests/heatmap2Test.Rout.save	2006-11-14 18:29:35 UTC (rev 1010)
@@ -1,6 +1,7 @@
 
-R : Copyright 2005, The R Foundation for Statistical Computing
-Version 2.1.1  (2005-06-20), ISBN 3-900051-07-0
+R version 2.4.0 (2006-10-03)
+Copyright (C) 2006 The R Foundation for Statistical Computing
+ISBN 3-900051-07-0
 
 R is free software and comes with ABSOLUTELY NO WARRANTY.
 You are welcome to redistribute it under certain conditions.
@@ -11,12 +12,9 @@
 'citation()' on how to cite R or R packages in publications.
 
 Type 'demo()' for some demos, 'help()' for on-line help, or
-'help.start()' for a HTML browser interface to help.
+'help.start()' for an HTML browser interface to help.
 Type 'q()' to quit R.
 
-[1] "Repostitories set to: CRAN, CRANextra, BioC, Omegahat -> ~/.Rprofile"
-> invisible(options(echo = TRUE))
-> .libPaths("~/Rlib")
 > library(gplots)
 Loading required package: gtools
 Loading required package: gdata
@@ -29,13 +27,11 @@
 	 lowess 
 
 > 
-> #source("/home/jainn02/projects/gregmisc/gplots/R/heatmap.2.R")
+> data(mtcars)
+> x  <- as.matrix(mtcars)
+> rc <- rainbow(nrow(x), start=0, end=.3)
+> cc <- rainbow(ncol(x), start=0, end=.3)
 > 
->  data(mtcars)
->  x  <- as.matrix(mtcars)
->  rc <- rainbow(nrow(x), start=0, end=.3)
->  cc <- rainbow(ncol(x), start=0, end=.3)
-> 
 > heatmap.2(x)  ## default - dendrogram plotted and reordering done.
 > heatmap.2(x, dendrogram="none") ##  no dendrogram plotted, but reordering done.
 > heatmap.2(x, dendrogram="row") ## row dendrogram plotted and row reordering done.
@@ -108,6 +104,4 @@
  $ rowInd: int [1:32] 31 17 16 15 5 25 29 24 7 6 ...
  $ colInd: int [1:11] 2 9 8 11 6 5 10 7 1 4 ...
 > 
-> proc.time()
-[1] 3.65 0.47 6.82 0.01 0.00
 > 


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[R-gregmisc-users] SF.net SVN: r-gregmisc: [1218] trunk/gplots/tests/heatmap2Test.Rout.save

[<wa...@us...>]

Revision: 1218
          http://r-gregmisc.svn.sourceforge.net/r-gregmisc/?rev=1218&view=rev
Author:   warnes
Date:     2007-11-02 12:32:04 -0700 (Fri, 02 Nov 2007)

Log Message:
-----------
Update saved test output due to changes in how R reports warnings

Modified Paths:
--------------
    trunk/gplots/tests/heatmap2Test.Rout.save

Modified: trunk/gplots/tests/heatmap2Test.Rout.save
===================================================================
--- trunk/gplots/tests/heatmap2Test.Rout.save	2007-11-02 18:22:36 UTC (rev 1217)
+++ trunk/gplots/tests/heatmap2Test.Rout.save	2007-11-02 19:32:04 UTC (rev 1218)
@@ -1,6 +1,6 @@
 
-R version 2.4.0 (2006-10-03)
-Copyright (C) 2006 The R Foundation for Statistical Computing
+R version 2.6.0 (2007-10-03)
+Copyright (C) 2007 The R Foundation for Statistical Computing
 ISBN 3-900051-07-0
 
 R is free software and comes with ABSOLUTELY NO WARRANTY.
@@ -42,36 +42,45 @@
 > 
 > heatmap.2(x, Colv=FALSE)
 Warning message:
-Discrepancy: Colv is FALSE, while dendrogram is `row'. Omitting column dendogram. in: heatmap.2(x, Colv = FALSE) 
+In heatmap.2(x, Colv = FALSE) :
+  Discrepancy: Colv is FALSE, while dendrogram is `row'. Omitting column dendogram.
 > heatmap.2(x, Colv=NULL)
 Warning message:
-Discrepancy: Colv is FALSE, while dendrogram is `row'. Omitting column dendogram. in: heatmap.2(x, Colv = NULL) 
+In heatmap.2(x, Colv = NULL) :
+  Discrepancy: Colv is FALSE, while dendrogram is `row'. Omitting column dendogram.
 > 
 > heatmap.2(x, Rowv=FALSE)
 Warning message:
-Discrepancy: Rowv is FALSE, while dendrogram is `column'. Omitting row dendogram. in: heatmap.2(x, Rowv = FALSE) 
+In heatmap.2(x, Rowv = FALSE) :
+  Discrepancy: Rowv is FALSE, while dendrogram is `column'. Omitting row dendogram.
 > heatmap.2(x, Rowv=NULL)
 Warning message:
-Discrepancy: Rowv is FALSE, while dendrogram is `column'. Omitting row dendogram. in: heatmap.2(x, Rowv = NULL) 
+In heatmap.2(x, Rowv = NULL) :
+  Discrepancy: Rowv is FALSE, while dendrogram is `column'. Omitting row dendogram.
 > 
 > heatmap.2(x, Rowv=FALSE, dendrogram="both") ## generate warning!
 Warning message:
-Discrepancy: Rowv is FALSE, while dendrogram is `column'. Omitting row dendogram. in: heatmap.2(x, Rowv = FALSE, dendrogram = "both") 
+In heatmap.2(x, Rowv = FALSE, dendrogram = "both") :
+  Discrepancy: Rowv is FALSE, while dendrogram is `column'. Omitting row dendogram.
 > heatmap.2(x, Rowv=NULL, dendrogram="both")  ## generate warning!
 Warning message:
-Discrepancy: Rowv is FALSE, while dendrogram is `column'. Omitting row dendogram. in: heatmap.2(x, Rowv = NULL, dendrogram = "both") 
+In heatmap.2(x, Rowv = NULL, dendrogram = "both") :
+  Discrepancy: Rowv is FALSE, while dendrogram is `column'. Omitting row dendogram.
 > heatmap.2(x, Colv=FALSE, dendrogram="both") ## generate warning!
 Warning message:
-Discrepancy: Colv is FALSE, while dendrogram is `row'. Omitting column dendogram. in: heatmap.2(x, Colv = FALSE, dendrogram = "both") 
+In heatmap.2(x, Colv = FALSE, dendrogram = "both") :
+  Discrepancy: Colv is FALSE, while dendrogram is `row'. Omitting column dendogram.
 > 
 > 
 > 
 > heatmap.2(x,dendrogram="both", Rowv=FALSE) ## row and col reordering done, but only col dendrogram plotted 
 Warning message:
-Discrepancy: Rowv is FALSE, while dendrogram is `column'. Omitting row dendogram. in: heatmap.2(x, dendrogram = "both", Rowv = FALSE) 
+In heatmap.2(x, dendrogram = "both", Rowv = FALSE) :
+  Discrepancy: Rowv is FALSE, while dendrogram is `column'. Omitting row dendogram.
 > heatmap.2(x,dendrogram="row",  Rowv=FALSE) 
 Warning message:
-Discrepancy: Rowv is FALSE, while dendrogram is `column'. Omitting row dendogram. in: heatmap.2(x, dendrogram = "row", Rowv = FALSE) 
+In heatmap.2(x, dendrogram = "row", Rowv = FALSE) :
+  Discrepancy: Rowv is FALSE, while dendrogram is `column'. Omitting row dendogram.
 > 
 > 
 > heatmap.2(x,dendrogram="col",  Rowv=FALSE)
@@ -80,17 +89,20 @@
 > 
 > heatmap.2(x,dendrogram="both", Colv=FALSE) ## row and col reordering done, but only row dendrogram plotted
 Warning message:
-Discrepancy: Colv is FALSE, while dendrogram is `row'. Omitting column dendogram. in: heatmap.2(x, dendrogram = "both", Colv = FALSE) 
+In heatmap.2(x, dendrogram = "both", Colv = FALSE) :
+  Discrepancy: Colv is FALSE, while dendrogram is `row'. Omitting column dendogram.
 > heatmap.2(x,dendrogram="row",  Colv=FALSE)
 > heatmap.2(x,dendrogram="col",  Colv=FALSE)
 Warning message:
-Discrepancy: Colv is FALSE, while dendrogram is `row'. Omitting column dendogram. in: heatmap.2(x, dendrogram = "col", Colv = FALSE) 
+In heatmap.2(x, dendrogram = "col", Colv = FALSE) :
+  Discrepancy: Colv is FALSE, while dendrogram is `row'. Omitting column dendogram.
 > heatmap.2(x,dendrogram="none", Colv=FALSE) 
 > 
 > ## above statement is same as heatmap.2(x,Colv=FALSE)
 > heatmap.2(x,dendrogram="col", Colv=FALSE) ## col reordering done, but no dendrogram plotted 
 Warning message:
-Discrepancy: Colv is FALSE, while dendrogram is `row'. Omitting column dendogram. in: heatmap.2(x, dendrogram = "col", Colv = FALSE) 
+In heatmap.2(x, dendrogram = "col", Colv = FALSE) :
+  Discrepancy: Colv is FALSE, while dendrogram is `row'. Omitting column dendogram.
 > 
 > 
 > hv <- heatmap.2(x, col=cm.colors(256), scale="column", 


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