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From: <wa...@us...> - 2013-07-06 23:46:28
|
Revision: 1702
http://sourceforge.net/p/r-gregmisc/code/1702
Author: warnes
Date: 2013-07-06 23:46:26 +0000 (Sat, 06 Jul 2013)
Log Message:
-----------
Change assert from deprecated to defunct.
Modified Paths:
--------------
trunk/gtools/R/deprecated.R
Modified: trunk/gtools/R/deprecated.R
===================================================================
--- trunk/gtools/R/deprecated.R 2013-07-06 23:45:05 UTC (rev 1701)
+++ trunk/gtools/R/deprecated.R 2013-07-06 23:46:26 UTC (rev 1702)
@@ -1,6 +1,4 @@
## useful function, raises an error if the FLAG expression is FALSE
assert <- function( FLAG )
- {
- .Deprecated(new="stopifnot", package="base")
- stopifnot(FLAG)
- }
+ .Defunct(new="stopifnot", package="gtools")
+
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|
|
From: <wa...@us...> - 2013-07-06 23:45:08
|
Revision: 1701
http://sourceforge.net/p/r-gregmisc/code/1701
Author: warnes
Date: 2013-07-06 23:45:05 +0000 (Sat, 06 Jul 2013)
Log Message:
-----------
Improve deprecation message
Modified Paths:
--------------
trunk/gtools/R/addLast.R
Modified: trunk/gtools/R/addLast.R
===================================================================
--- trunk/gtools/R/addLast.R 2013-07-06 23:43:56 UTC (rev 1700)
+++ trunk/gtools/R/addLast.R 2013-07-06 23:45:05 UTC (rev 1701)
@@ -1,6 +1,6 @@
addLast <- function( fun )
{
- .Deprecated(new=paste(".Last <- lastAdd(", deparse(substitute(fun)), ")"),
+ .Deprecated(new=paste(".Last <- lastAdd(", deparse(substitute(fun)), ")", sep=''),
package='gtools'
)
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|
From: <wa...@us...> - 2013-07-06 23:43:59
|
Revision: 1700
http://sourceforge.net/p/r-gregmisc/code/1700
Author: warnes
Date: 2013-07-06 23:43:56 +0000 (Sat, 06 Jul 2013)
Log Message:
-----------
Update for gtools 3.0.0
Modified Paths:
--------------
trunk/gtools/DESCRIPTION
trunk/gtools/inst/NEWS
Modified: trunk/gtools/DESCRIPTION
===================================================================
--- trunk/gtools/DESCRIPTION 2013-07-06 23:26:07 UTC (rev 1699)
+++ trunk/gtools/DESCRIPTION 2013-07-06 23:43:56 UTC (rev 1700)
@@ -1,8 +1,8 @@
Package: gtools
Title: Various R programming tools
Description: Various R programming tools
-Version: 2.7.2
-Date: 2013-07-05
+Version: 3.0.0
+Date: 2013-07-06
Author: Gregory R. Warnes, Ben Bolker, and Thomas Lumley
Maintainer: Gregory R. Warnes <gr...@wa...>
License: LGPL-2.1
Modified: trunk/gtools/inst/NEWS
===================================================================
--- trunk/gtools/inst/NEWS 2013-07-06 23:26:07 UTC (rev 1699)
+++ trunk/gtools/inst/NEWS 2013-07-06 23:43:56 UTC (rev 1700)
@@ -1,6 +1,24 @@
-gtools 2.7.2 - 2013-07-05
+gtools 3.0.0 - 2013-07-06
-------------------------
+Major changes:
+
+- The function 'addLast()' has been deprecated because it directly
+ manipulates the global environment, which is expressly prohibited by
+ the CRAN policies.
+
+- A new function, 'lastAdd()' has been created to replace 'addLast()'.
+ The name has been changed because the two functions require
+ different syntax. 'addLast()' was used like this:
+
+ byeWorld <- function() cat("\nGoodbye World!\n")
+ addLast(byeWorld)
+
+ The new 'lastAdd()' function is used like this:
+
+ byeWorld <- function() cat("\nGoodbye World!\n")
+ .Last <- lastAdd(byeWorld)
+
Bug fixes:
- Update checkRVersion() to work with R version 3.0.0 and later.
@@ -8,9 +26,10 @@
Other changes:
- Remove cross-reference to (obsolete?) moc package
-- Add text to man page for addLast() noting that the value of .Last is
- changed in the global environment.
+- The function 'assert()' (deprecated since gtools 2.5.0) is no longer
+ available and has been marked defunct.
+
gtools 2.7.1 - 2013-03-17
-------------------------
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|
|
From: <wa...@us...> - 2013-07-06 23:26:10
|
Revision: 1699
http://sourceforge.net/p/r-gregmisc/code/1699
Author: warnes
Date: 2013-07-06 23:26:07 +0000 (Sat, 06 Jul 2013)
Log Message:
-----------
Create new function lastAdd to replace addLast and mark addLast as deprecated.
Modified Paths:
--------------
trunk/gtools/R/addLast.R
trunk/gtools/man/gtools-deprecated.Rd
Added Paths:
-----------
trunk/gtools/man/addLast-deprecated.Rd
trunk/gtools/man/gtools-defunct.Rd
trunk/gtools/man/lastAdd.Rd
Removed Paths:
-------------
trunk/gtools/man/addLast.Rd
Modified: trunk/gtools/R/addLast.R
===================================================================
--- trunk/gtools/R/addLast.R 2013-07-05 23:48:27 UTC (rev 1698)
+++ trunk/gtools/R/addLast.R 2013-07-06 23:26:07 UTC (rev 1699)
@@ -1,8 +1,30 @@
addLast <- function( fun )
{
+ .Deprecated(new=paste(".Last <- lastAdd(", deparse(substitute(fun)), ")"),
+ package='gtools'
+ )
+
if (!is.function(fun)) stop("fun must be a function")
+ if (!exists(".Last", envir = .GlobalEnv))
+ assign(".Last", fun, envir = .GlobalEnv)
+ else
+ {
+ Last <- get(".Last", envir = .GlobalEnv)
+ newfun <- function(...) {
+ fun()
+ Last()
+ }
+ assign(".Last", newfun, envir = .GlobalEnv)
+ }
+ }
+
+lastAdd <- function( fun )
+ {
+ if (!is.function(fun)) stop("fun must be a function")
if(!exists(".Last", envir=.GlobalEnv))
- assign(".Last", fun, envir=.GlobalEnv)
+ {
+ return(fun)
+ }
else
{
Last <- get(".Last", envir=.GlobalEnv)
@@ -11,6 +33,7 @@
fun()
Last()
}
- assign(".Last", newfun, envir=.GlobalEnv)
+ return(newfun)
}
}
+
Copied: trunk/gtools/man/addLast-deprecated.Rd (from rev 1697, trunk/gtools/man/addLast.Rd)
===================================================================
--- trunk/gtools/man/addLast-deprecated.Rd (rev 0)
+++ trunk/gtools/man/addLast-deprecated.Rd 2013-07-06 23:26:07 UTC (rev 1699)
@@ -0,0 +1,78 @@
+\name{addLast-deprecated}
+\alias{addLast-deprecated}
+\title{Add a function to be executed when R exits.}
+\description{
+ Add a function to be executed when R exits.
+}
+\usage{
+addLast(fun)
+}
+\arguments{
+ \item{fun}{Function to be called.}
+}
+\details{
+ \code{addLast} defines the \code{.Last} function in the global
+ environment (if not already present) or redifines it so that the
+ function \code{fun} will be called when R exits. The latter is
+ accomplished by saving the current definition of \code{.Last} and
+ creating a new \code{.Last} function that calls \code{fun} and then
+ the original \code{.Last} function.
+}
+\value{
+ None.
+}
+\note{This function has been deprecated in favor of \code{lastAdd}
+ because it creates/modifies the definition of '.Last' in the
+ global environment, which is expressly disallowed by the CRAN
+ policies. }
+\author{Gregory R. Warnes \email{gr...@wa...}}
+\seealso{
+ \code{\link[base]{.Last}},
+ \code{\link[gtools]{lastAdd}}
+}
+\examples{
+
+## Print a couple of cute messages when R exits.
+helloWorld <- function() cat("\nHello World!\n")
+byeWorld <- function() cat("\nGoodbye World!\n")
+
+addLast(byeWorld)
+addLast(helloWorld)
+
+\dontrun{
+q("no")
+
+## Should yield:
+##
+## Save workspace image? [y/n/c]: n
+##
+## Hello World!
+##
+## Goodbye World!
+##
+## Process R finished at Tue Nov 22 10:28:55 2005
+}
+
+## Unix-flavour example: send Rplots.ps to printer on exit.
+myLast <- function()
+{
+ cat("Now sending PostScript graphics to the printer:\n")
+ system("lpr Rplots.ps")
+ cat("bye bye...\n")
+}
+addLast(myLast)
+\dontrun{
+quit("yes")
+
+## Should yield:
+##
+## Now sending PostScript graphics to the printer:
+## lpr: job 1341 queued
+## bye bye...
+##
+## Process R finished at Tue Nov 22 10:28:55 2005
+}
+
+}
+\keyword{programming}
+
Deleted: trunk/gtools/man/addLast.Rd
===================================================================
--- trunk/gtools/man/addLast.Rd 2013-07-05 23:48:27 UTC (rev 1698)
+++ trunk/gtools/man/addLast.Rd 2013-07-06 23:26:07 UTC (rev 1699)
@@ -1,73 +0,0 @@
-\name{addLast}
-\alias{addLast}
-\title{Add a function to be executed when R exits.}
-\description{
- Add a function to be executed when R exits.
-}
-\usage{
-addLast(fun)
-}
-\arguments{
- \item{fun}{Function to be called.}
-}
-\details{
- \code{addLast} defines the \code{.Last} function in the global
- environment (if not already present) or redifines it so that the
- function \code{fun} will be called when R exits. The latter is
- accomplished by saving the current definition of \code{.Last} and
- creating a new \code{.Last} function that calls \code{fun} and then
- the original \code{.Last} function.
-}
-\value{
- None.
-}
-\note{This function creates/modifies the definition of '.Last' in the
- global environment.}
-\author{Gregory R. Warnes \email{gr...@wa...}}
-\seealso{ \code{\link[base]{.Last}} }
-\examples{
-
-## Print a couple of cute messages when R exits.
-helloWorld <- function() cat("\nHello World!\n")
-byeWorld <- function() cat("\nGoodbye World!\n")
-
-addLast(byeWorld)
-addLast(helloWorld)
-
-\dontrun{
-q("no")
-
-## Should yield:
-##
-## Save workspace image? [y/n/c]: n
-##
-## Hello World!
-##
-## Goodbye World!
-##
-## Process R finished at Tue Nov 22 10:28:55 2005
-}
-
-## Unix-flavour example: send Rplots.ps to printer on exit.
-myLast <- function()
-{
- cat("Now sending PostScript graphics to the printer:\n")
- system("lpr Rplots.ps")
- cat("bye bye...\n")
-}
-addLast(myLast)
-\dontrun{
-quit("yes")
-
-## Should yield:
-##
-## Now sending PostScript graphics to the printer:
-## lpr: job 1341 queued
-## bye bye...
-##
-## Process R finished at Tue Nov 22 10:28:55 2005
-}
-
-}
-\keyword{programming}
-
Copied: trunk/gtools/man/gtools-defunct.Rd (from rev 1698, trunk/gtools/man/gtools-deprecated.Rd)
===================================================================
--- trunk/gtools/man/gtools-defunct.Rd (rev 0)
+++ trunk/gtools/man/gtools-defunct.Rd 2013-07-06 23:26:07 UTC (rev 1699)
@@ -0,0 +1,20 @@
+\name{gtools-defunct}
+\alias{gtools-defunct}
+\alias{assert}
+\title{Deprecated Functions in the gtools package}
+\description{
+ These functions are no longer available in gtools.
+}
+\usage{
+assert(FLAG)
+}
+\arguments{
+ \item{FLAG}{ Expression that should evaluate to a boolean vector}
+}
+\details{
+ \code{assert} is a defunct synonym for \code{\link[base]{stopifnot}}.
+}
+\seealso{
+ \code{\link{Defunct}}
+}
+\keyword{misc}
Modified: trunk/gtools/man/gtools-deprecated.Rd
===================================================================
--- trunk/gtools/man/gtools-deprecated.Rd 2013-07-05 23:48:27 UTC (rev 1698)
+++ trunk/gtools/man/gtools-deprecated.Rd 2013-07-06 23:26:07 UTC (rev 1699)
@@ -1,24 +1,29 @@
\name{gtools-deprecated}
\alias{gtools-deprecated}
-\alias{assert}
+\alias{addLast}
\title{Deprecated Functions in the gtools package}
\description{
These functions are provided for compatibility with older versions of
gtools, and may be defunct as soon as the next release.
}
\usage{
-assert(FLAG)
+addLast(fun)
}
\arguments{
- \item{FLAG}{ Expression that should evaluate to a boolean vector}
+ \item{fun}{Function to be called.}
}
\details{
The original help page for these functions is often
available at \code{help("oldName-deprecated")} (note the quotes).
- \code{assert} is a deprecated synonym for \code{\link[base]{stopifnot}}.
+ \itemize{
+ \item{ \code{addLast} has been replaced by \code{lastAdd}, which has
+ the same purpose but appled using different syntax. }
+ }
+
}
\seealso{
\code{\link{Deprecated}}
+ \code{\link[gtools]{lastAdd}}
}
\keyword{misc}
Copied: trunk/gtools/man/lastAdd.Rd (from rev 1697, trunk/gtools/man/addLast.Rd)
===================================================================
--- trunk/gtools/man/lastAdd.Rd (rev 0)
+++ trunk/gtools/man/lastAdd.Rd 2013-07-06 23:26:07 UTC (rev 1699)
@@ -0,0 +1,86 @@
+\name{lastAdd}
+\alias{lastAdd}
+\title{Non-destructively construct a .Last function to be executed when R exits.}
+\description{
+ Non-destructively construct a \code{.Last} function to be executed when R exits.
+}
+\usage{
+.Last <- addLast(fun)
+}
+\arguments{
+ \item{fun}{Function to be called.}
+}
+\details{
+ \code{lastAdd} constructs a new function to be used to replace the
+ exising definition of \code{.Last}, which will be executed when R
+ terminates normally.
+
+ If a \code{.Last} function already exists in the global environment,
+ the original definition is stored in a private environment, and the
+ new function is defined to call the function \code{fun} and then to
+ call the previous (stored) definition of \code{.Last}.
+
+ If no \code{.Last} function exists in the global environment,
+ \code{lastAdd} simply returns the function \code{fun}.
+}
+
+\note{
+ This function replaces the (now deprecated) \code{addLast} function.
+}
+\value{
+ A new function to be used for \code{.Last}.
+}
+\author{Gregory R. Warnes \email{gr...@wa...}}
+\seealso{ \code{\link[base]{.Last}} }
+\examples{
+
+## Print a couple of cute messages when R exits.
+helloWorld <- function() cat("\nHello World!\n")
+byeWorld <- function() cat("\nGoodbye World!\n")
+
+.Last <- lastAdd(byeWorld)
+.Last <- lastAdd(helloWorld)
+
+\dontshow{
+.Last()
+}
+\dontrun{
+q("no")
+
+## Should yield:
+##
+## Save workspace image? [y/n/c]: n
+##
+## Hello World!
+##
+## Goodbye World!
+##
+## Process R finished at Tue Nov 22 10:28:55 2005
+}
+
+## Unix-flavour example: send Rplots.ps to printer on exit.
+myLast <- function()
+{
+ cat("Now sending PostScript graphics to the printer:\n")
+ system("lpr Rplots.ps")
+ cat("bye bye...\n")
+}
+.Last <- lastAdd(myLast)
+\dontshow{
+.Last()
+}
+\dontrun{
+quit("yes")
+
+## Should yield:
+##
+## Now sending PostScript graphics to the printer:
+## lpr: job 1341 queued
+## bye bye...
+##
+## Process R finished at Tue Nov 22 10:28:55 2005
+}
+
+}
+\keyword{programming}
+
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|
|
From: <wa...@us...> - 2013-07-05 23:48:30
|
Revision: 1698
http://sourceforge.net/p/r-gregmisc/code/1698
Author: warnes
Date: 2013-07-05 23:48:27 +0000 (Fri, 05 Jul 2013)
Log Message:
-----------
Point out that addLast() modifies the value of .Last in the global environment.
Modified Paths:
--------------
trunk/gtools/inst/NEWS
Modified: trunk/gtools/inst/NEWS
===================================================================
--- trunk/gtools/inst/NEWS 2013-07-05 23:47:03 UTC (rev 1697)
+++ trunk/gtools/inst/NEWS 2013-07-05 23:48:27 UTC (rev 1698)
@@ -3,11 +3,13 @@
Bug fixes:
-- Update checkRVersion() to works with R version 3.0.0 and later.
+- Update checkRVersion() to work with R version 3.0.0 and later.
Other changes:
- Remove cross-reference to (obsolete?) moc package
+- Add text to man page for addLast() noting that the value of .Last is
+ changed in the global environment.
gtools 2.7.1 - 2013-03-17
-------------------------
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|
|
From: <wa...@us...> - 2013-07-05 23:47:06
|
Revision: 1697
http://sourceforge.net/p/r-gregmisc/code/1697
Author: warnes
Date: 2013-07-05 23:47:03 +0000 (Fri, 05 Jul 2013)
Log Message:
-----------
Point out that addLast() modifies the value of .Last in the global environment.
Modified Paths:
--------------
trunk/gtools/man/addLast.Rd
Modified: trunk/gtools/man/addLast.Rd
===================================================================
--- trunk/gtools/man/addLast.Rd 2013-07-05 23:34:38 UTC (rev 1696)
+++ trunk/gtools/man/addLast.Rd 2013-07-05 23:47:03 UTC (rev 1697)
@@ -11,20 +11,22 @@
\item{fun}{Function to be called.}
}
\details{
- \code{addLast} defines \code{.Last} (if not already present) or redifines it
- so that the function \code{fun} will be called when R exits. The
- latter is accomplished by saving the current definition of \code{.Last} and
- creating a new \code{.Last} function that calls \code{fun} and then the
- original \code{.Last} function.
+ \code{addLast} defines the \code{.Last} function in the global
+ environment (if not already present) or redifines it so that the
+ function \code{fun} will be called when R exits. The latter is
+ accomplished by saving the current definition of \code{.Last} and
+ creating a new \code{.Last} function that calls \code{fun} and then
+ the original \code{.Last} function.
}
\value{
None.
}
+\note{This function creates/modifies the definition of '.Last' in the
+ global environment.}
\author{Gregory R. Warnes \email{gr...@wa...}}
\seealso{ \code{\link[base]{.Last}} }
\examples{
-\dontrun{
## Print a couple of cute messages when R exits.
helloWorld <- function() cat("\nHello World!\n")
byeWorld <- function() cat("\nGoodbye World!\n")
@@ -32,6 +34,7 @@
addLast(byeWorld)
addLast(helloWorld)
+\dontrun{
q("no")
## Should yield:
@@ -43,6 +46,7 @@
## Goodbye World!
##
## Process R finished at Tue Nov 22 10:28:55 2005
+}
## Unix-flavour example: send Rplots.ps to printer on exit.
myLast <- function()
@@ -52,6 +56,7 @@
cat("bye bye...\n")
}
addLast(myLast)
+\dontrun{
quit("yes")
## Should yield:
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|
|
From: <wa...@us...> - 2013-07-05 23:34:40
|
Revision: 1696
http://sourceforge.net/p/r-gregmisc/code/1696
Author: warnes
Date: 2013-07-05 23:34:38 +0000 (Fri, 05 Jul 2013)
Log Message:
-----------
Update for gtools 2.7.2 mark 2
Modified Paths:
--------------
trunk/gtools/DESCRIPTION
trunk/gtools/inst/NEWS
Modified: trunk/gtools/DESCRIPTION
===================================================================
--- trunk/gtools/DESCRIPTION 2013-07-05 23:33:15 UTC (rev 1695)
+++ trunk/gtools/DESCRIPTION 2013-07-05 23:34:38 UTC (rev 1696)
@@ -6,3 +6,4 @@
Author: Gregory R. Warnes, Ben Bolker, and Thomas Lumley
Maintainer: Gregory R. Warnes <gr...@wa...>
License: LGPL-2.1
+
Modified: trunk/gtools/inst/NEWS
===================================================================
--- trunk/gtools/inst/NEWS 2013-07-05 23:33:15 UTC (rev 1695)
+++ trunk/gtools/inst/NEWS 2013-07-05 23:34:38 UTC (rev 1696)
@@ -5,6 +5,10 @@
- Update checkRVersion() to works with R version 3.0.0 and later.
+Other changes:
+
+- Remove cross-reference to (obsolete?) moc package
+
gtools 2.7.1 - 2013-03-17
-------------------------
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From: <wa...@us...> - 2013-07-05 23:33:18
|
Revision: 1695
http://sourceforge.net/p/r-gregmisc/code/1695
Author: warnes
Date: 2013-07-05 23:33:15 +0000 (Fri, 05 Jul 2013)
Log Message:
-----------
Remove cross-reference to (obsolete?) moc package
Modified Paths:
--------------
trunk/gtools/man/logit.Rd
Modified: trunk/gtools/man/logit.Rd
===================================================================
--- trunk/gtools/man/logit.Rd 2013-07-05 17:31:56 UTC (rev 1694)
+++ trunk/gtools/man/logit.Rd 2013-07-05 23:33:15 UTC (rev 1695)
@@ -43,7 +43,7 @@
Transformed value(s).
}
\author{ Gregory R. Warnes \email{gr...@wa...} }
-\seealso{ \code{\link[car]{logit}}, \code{\link[moc]{inv.glogit}} }
+\seealso{ \code{\link[car]{logit}} }
\examples{
x <- seq(0,10, by=0.25)
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|
|
From: <wa...@us...> - 2013-07-05 17:31:59
|
Revision: 1694
http://sourceforge.net/p/r-gregmisc/code/1694
Author: warnes
Date: 2013-07-05 17:31:56 +0000 (Fri, 05 Jul 2013)
Log Message:
-----------
Update for gtools 2.7.2
Modified Paths:
--------------
trunk/gtools/DESCRIPTION
trunk/gtools/inst/NEWS
Modified: trunk/gtools/DESCRIPTION
===================================================================
--- trunk/gtools/DESCRIPTION 2013-07-05 17:29:07 UTC (rev 1693)
+++ trunk/gtools/DESCRIPTION 2013-07-05 17:31:56 UTC (rev 1694)
@@ -1,9 +1,8 @@
Package: gtools
Title: Various R programming tools
Description: Various R programming tools
-Version: 2.7.0
-Date: 2012-06-19
-Author: Gregory R. Warnes. Includes R source code and/or documentation
- contributed by Ben Bolker and Thomas Lumley
+Version: 2.7.2
+Date: 2013-07-05
+Author: Gregory R. Warnes, Ben Bolker, and Thomas Lumley
Maintainer: Gregory R. Warnes <gr...@wa...>
License: LGPL-2.1
Modified: trunk/gtools/inst/NEWS
===================================================================
--- trunk/gtools/inst/NEWS 2013-07-05 17:29:07 UTC (rev 1693)
+++ trunk/gtools/inst/NEWS 2013-07-05 17:31:56 UTC (rev 1694)
@@ -1,3 +1,18 @@
+gtools 2.7.2 - 2013-07-05
+-------------------------
+
+Bug fixes:
+
+- Update checkRVersion() to works with R version 3.0.0 and later.
+
+gtools 2.7.1 - 2013-03-17
+-------------------------
+
+Bug fixes:
+
+- smartbind() was not properly handling factor columns when the first
+ data frame did not include the relevant column.
+
gtools 2.7.0 - 2012-06-19
-------------------------
@@ -32,7 +47,7 @@
available R versions.
- Add keywords() function to show $RHOME/doc/KEYWORDS file
-
+
Bug fixes:
- Correct windows make flags as suggested by Brian Ripley.
@@ -46,7 +61,7 @@
New features:
- Add checkRVersion() function to determin if a newer version of R is
- available.
+ available.
- Deprecated assert() in favor of base::stopifnot
@@ -60,12 +75,12 @@
function().
- Update definitions of odd() and even() to use modulus operator
- instead of division.
+ instead of division.
gtools 2.4.0
------------
-- Add binsearch() function, previously in the genetics() package.
+- Add binsearch() function, previously in the genetics() package.
gtools 2.3.1
@@ -96,7 +111,7 @@
- NAMESPACE: Add UseDynLib to NAMESPACE so the shared library gets
properly loaded.
- - Updated Greg's email address.
+ - Updated Greg's email address.
gtools 2.2.1
------------
@@ -113,7 +128,7 @@
- Added assert.R (and documentation)
- Added the defmacro() function, extracted from Lumley T. "Programmer's Niche:
- Macros in {R}", R News, 2001, Vol 1, No. 3, pp 11--13,
+ Macros in {R}", R News, 2001, Vol 1, No. 3, pp 11--13,
\url{http://CRAN.R-project.org/doc/Rnews/}
- Added DESCRIPTION and removed DESCRIPTION.in
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|
|
From: <wa...@us...> - 2013-07-05 17:29:09
|
Revision: 1693
http://sourceforge.net/p/r-gregmisc/code/1693
Author: warnes
Date: 2013-07-05 17:29:07 +0000 (Fri, 05 Jul 2013)
Log Message:
-----------
Update for R version 3.0.0 and later
Modified Paths:
--------------
trunk/gtools/R/checkRVersion.R
Modified: trunk/gtools/R/checkRVersion.R
===================================================================
--- trunk/gtools/R/checkRVersion.R 2013-06-29 01:40:47 UTC (rev 1692)
+++ trunk/gtools/R/checkRVersion.R 2013-07-05 17:29:07 UTC (rev 1693)
@@ -1,7 +1,13 @@
checkRVersion <- function(quiet=FALSE)
{
- page <- scan(file="http://cran.r-project.org/src/base/R-2", what="", quiet=TRUE)
- matches <- grep("R-[0-9]\\.[0-9]+\\.[0-9]+", page, value=TRUE)
+ page2 <- scan(file="http://cran.r-project.org/src/base/R-2",
+ what="", quiet=TRUE)
+ page3 <- scan(file="http://cran.r-project.org/src/base/R-3",
+ what="", quiet=TRUE)
+
+ combined <- c(page2, page3)
+
+ matches <- grep("R-[0-9]\\.[0-9]+\\.[0-9]+", combined, value=TRUE)
versionList <- gsub("^.*R-([0-9].[0-9]+.[0-9]+).*$","\\1",matches)
versionList <- numeric_version(versionList)
if( max(versionList) > getRversion() )
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|
From: <wa...@us...> - 2013-06-29 01:40:51
|
Revision: 1692
http://sourceforge.net/p/r-gregmisc/code/1692
Author: warnes
Date: 2013-06-29 01:40:47 +0000 (Sat, 29 Jun 2013)
Log Message:
-----------
Update NEWS for second try for gdata 2.13.2
Modified Paths:
--------------
trunk/gdata/inst/NEWS
Modified: trunk/gdata/inst/NEWS
===================================================================
--- trunk/gdata/inst/NEWS 2013-06-29 01:37:19 UTC (rev 1691)
+++ trunk/gdata/inst/NEWS 2013-06-29 01:40:47 UTC (rev 1692)
@@ -3,8 +3,8 @@
Enhancements:
-- Modify ll() function to use on.exit() to ensure that detach() occurs
- after attach() even when an error is encoundered during execution.
+- Simplify ll() by converting a passed list to an environment,
+ avoiding the need for special casing and the use of attach/detach.
- Working of deprecation warning message in aggregate.table clarified.
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|
From: <wa...@us...> - 2013-06-29 01:37:23
|
Revision: 1691
http://sourceforge.net/p/r-gregmisc/code/1691
Author: warnes
Date: 2013-06-29 01:37:19 +0000 (Sat, 29 Jun 2013)
Log Message:
-----------
Simplify ll() by stuffing list arguments into an environment, avoiding the need to use attach/detach.
Modified Paths:
--------------
trunk/gdata/R/ll.R
Modified: trunk/gdata/R/ll.R
===================================================================
--- trunk/gdata/R/ll.R 2013-06-28 22:01:04 UTC (rev 1690)
+++ trunk/gdata/R/ll.R 2013-06-29 01:37:19 UTC (rev 1691)
@@ -35,18 +35,7 @@
if(is.character(pos)) # pos is an environment name
pos <- match(pos, search())
if(is.list(pos)) # pos is a list-like object
- {
- if(length(pos) == 0)
- return(data.frame())
- attach(pos, pos=2, warn.conflicts=FALSE); on.exit(detach(pos=2))
- original.rank <- rank(names(pos))
- was.list <- TRUE
- pos <- 2
- }
- else
- {
- was.list <- FALSE
- }
+ pos <- as.environment(pos)
if(length(ls(pos,...)) == 0) # pos is an empty environment
{
object.frame <- data.frame()
@@ -77,12 +66,6 @@
object.frame <- cbind(object.frame,
Dim=sapply(ls(pos,...),get.object.dim,pos=pos))
}
- if(was.list)
- {
- detach(pos=2); on.exit()
- if(!sort)
- object.frame <- object.frame[original.rank, ]
- }
if(!is.null(class))
{
include <- object.frame$Class %in% class
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|
From: <wa...@us...> - 2013-06-28 22:01:11
|
Revision: 1690
http://sourceforge.net/p/r-gregmisc/code/1690
Author: warnes
Date: 2013-06-28 22:01:04 +0000 (Fri, 28 Jun 2013)
Log Message:
-----------
Update email address
Modified Paths:
--------------
trunk/BalloonPlotPaper/BalloonPlot.R
trunk/BalloonPlotPaper/BalloonPlot.pdf
trunk/BalloonPlotPaper/BalloonPlot.tex
trunk/BalloonPlotPaper/Figure1.pdf
trunk/BalloonPlotPaper/Figure2.pdf
trunk/BalloonPlotPaper/Figure3.pdf
trunk/BalloonPlotPaper/Figure4.pdf
Modified: trunk/BalloonPlotPaper/BalloonPlot.R
===================================================================
--- trunk/BalloonPlotPaper/BalloonPlot.R 2013-06-28 22:00:17 UTC (rev 1689)
+++ trunk/BalloonPlotPaper/BalloonPlot.R 2013-06-28 22:01:04 UTC (rev 1690)
@@ -1,7 +1,7 @@
####
## Figure 1
####
-.libPaths("~warneg/Rlib")
+##.libPaths("~warneg/Rlib")
library(gplots)
data(Titanic)
Modified: trunk/BalloonPlotPaper/BalloonPlot.pdf
===================================================================
(Binary files differ)
Modified: trunk/BalloonPlotPaper/BalloonPlot.tex
===================================================================
--- trunk/BalloonPlotPaper/BalloonPlot.tex 2013-06-28 22:00:17 UTC (rev 1689)
+++ trunk/BalloonPlotPaper/BalloonPlot.tex 2013-06-28 22:01:04 UTC (rev 1690)
@@ -268,11 +268,11 @@
to the development of \code{balloonplot}, as well as for the code
for displaying the row and column sums.
-\address{Gregory R. Warnes, Center for Biodefense Immune Modeling,
- Univeristy of Rochester, Rochester, NY, USA\\
-\email{wa...@bs...}\\
- Nitin Jain, Smith Hanley Inc, USA\\
-\email{nit...@pf...}}
+\address{Gregory R. Warnes, Gregory R. Warnes Statistical Consulting,
+ Pittsford, NY, USA\\
+\email{gr...@wa...}\\
+ Nitin Jain, Goldman Sachs, USA\\
+\email{ema...@gm...}}
\begin{thebibliography}{3}
Modified: trunk/BalloonPlotPaper/Figure1.pdf
===================================================================
(Binary files differ)
Modified: trunk/BalloonPlotPaper/Figure2.pdf
===================================================================
(Binary files differ)
Modified: trunk/BalloonPlotPaper/Figure3.pdf
===================================================================
(Binary files differ)
Modified: trunk/BalloonPlotPaper/Figure4.pdf
===================================================================
(Binary files differ)
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|
From: <wa...@us...> - 2013-06-28 22:00:20
|
Revision: 1689
http://sourceforge.net/p/r-gregmisc/code/1689
Author: warnes
Date: 2013-06-28 22:00:17 +0000 (Fri, 28 Jun 2013)
Log Message:
-----------
Remove old file
Removed Paths:
-------------
trunk/gregmisc/man/First.lib.Rd
Deleted: trunk/gregmisc/man/First.lib.Rd
===================================================================
--- trunk/gregmisc/man/First.lib.Rd 2013-06-28 21:44:19 UTC (rev 1688)
+++ trunk/gregmisc/man/First.lib.Rd 2013-06-28 22:00:17 UTC (rev 1689)
@@ -1,22 +0,0 @@
-\name{.First.lib}
-\alias{.First.lib}
-\title{Load all packages formerly part of the 'gregmisc' bundle}
-\description{
- Load all packages formerly part of the 'gregmisc' bundle
-}
-\usage{
-.First.lib(libname, pkgname)
-}
-\arguments{
- \item{libname}{ignored}
- \item{pkgname}{ignored}
-}
-\value{
- Nothing of interest
-}
-\author{ Gregory R. Warnes \email{gr...@wa...}}
-\seealso{ \code{\link[base]{.First.lib}}}
-\examples{
-## Should never be directly executed ##
-}
-\keyword{ misc }
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|
From: <wa...@us...> - 2013-06-28 21:44:22
|
Revision: 1688
http://sourceforge.net/p/r-gregmisc/code/1688
Author: warnes
Date: 2013-06-28 21:44:19 +0000 (Fri, 28 Jun 2013)
Log Message:
-----------
Update for gregmisc 2.1.4
Modified Paths:
--------------
trunk/gregmisc/DESCRIPTION
trunk/gregmisc/inst/NEWS
Added Paths:
-----------
trunk/gregmisc/ChangeLog
trunk/gregmisc/NEWS
trunk/gregmisc/inst/ChangeLog
Added: trunk/gregmisc/ChangeLog
===================================================================
--- trunk/gregmisc/ChangeLog (rev 0)
+++ trunk/gregmisc/ChangeLog 2013-06-28 21:44:19 UTC (rev 1688)
@@ -0,0 +1 @@
+link inst/ChangeLog
\ No newline at end of file
Property changes on: trunk/gregmisc/ChangeLog
___________________________________________________________________
Added: svn:special
## -0,0 +1 ##
+*
\ No newline at end of property
Modified: trunk/gregmisc/DESCRIPTION
===================================================================
--- trunk/gregmisc/DESCRIPTION 2013-06-28 21:41:23 UTC (rev 1687)
+++ trunk/gregmisc/DESCRIPTION 2013-06-28 21:44:19 UTC (rev 1688)
@@ -2,14 +2,15 @@
Title: Greg's Miscellaneous Functions
Description: Various functions to manipulate data.
Depends: gdata, gmodels, gplots, gtools
-Description: The former gregmisc bundle is a repository for a variety of
- useful functions. The gregmisc package was recently split into
- a set of more focused packages: gdata, gmodels, gplots, gtools.
- The purpose of this 'new' gregmisc is to provide an easy
- way to access the original combined functionality. To this
- end, it simply depends on all of the new packages so that
- these will installed/loaded when this package is installed/loaded.
-Version: 2.1.3
+Description: The former gregmisc bundle is a repository for a variety
+ of useful functions. The gregmisc package has been split
+ into a set of more focused packages: gdata, gmodels,
+ gplots, gtools. The purpose of this 'new' gregmisc is to
+ provide an easy way to access the original combined
+ functionality. To this end, it simply depends on all of
+ the new packages so that these will installed/loaded when
+ this package is installed/loaded.
+Version: 2.1.5
Author: Gregory R. Warnes.
Maintainer: Gregory R. Warnes <gr...@wa...>
License: GPL-2
Added: trunk/gregmisc/NEWS
===================================================================
--- trunk/gregmisc/NEWS (rev 0)
+++ trunk/gregmisc/NEWS 2013-06-28 21:44:19 UTC (rev 1688)
@@ -0,0 +1 @@
+link inst/NEWS
\ No newline at end of file
Property changes on: trunk/gregmisc/NEWS
___________________________________________________________________
Added: svn:special
## -0,0 +1 ##
+*
\ No newline at end of property
Added: trunk/gregmisc/inst/ChangeLog
===================================================================
--- trunk/gregmisc/inst/ChangeLog (rev 0)
+++ trunk/gregmisc/inst/ChangeLog 2013-06-28 21:44:19 UTC (rev 1688)
@@ -0,0 +1,292 @@
+2013-06-28 warnes
+
+ * [r1686] R/First.R, R/onAttach.R: Rename .First.lib to .onAttach
+
+2012-12-14 warnes
+
+ * [r1638] .Rinstignore, .Rinstingore: Fix typo in filename
+ * [r1637] .Rinstingore: Move file to correct directory
+ * [r1635] NAMESPACE: Add requisite NAMESPACE file.
+ * [r1634] DESCRIPTION: Bump version number.
+ * [r1633] inst/doc/gregmisc.pdf: Add gregmisc.pdf to subversion.
+ * [r1632] man/First.lib.Rd: Update author email address.
+
+2011-09-01 warnes
+
+ * [r1492] R/First.R: Minor rewording of startup message.
+
+2011-08-26 warnes
+
+ * [r1483] R/First.R: Use packageStartupMessage() instead of
+ warning() to display a startup message on package load.
+ * [r1479] DESCRIPTION: Update Greg's email address
+
+2007-10-22 warnes
+
+ * [r1196] DESCRIPTION: Clarify GPL version
+
+2006-11-29 warnes
+
+ * [r1032] man, man/First.lib.Rd: Add dummy manual page to make 'R
+ CMD check' happy
+ * [r1031] DESCRIPTION: Update for new release
+ * [r1030] DESCRIPTION, R, TODO, gregmisc: Remove extraneous
+ subdirectory
+
+2006-08-02 warnes
+
+ * [r977] DESCRIPTION, gregmisc/DESCRIPTION.standalone,
+ inst/doc/gregmisc.tex: Update my email address
+
+2006-04-20 nj7w
+
+ * [r956] gregmisc/DESCRIPTION.in: Changed the typ of Backword to
+ Backward
+
+2005-05-11 warnes
+
+ * [r620] DESCRIPTION: Add dependency on gdata::frameApply.
+
+2005-04-04 warnes
+
+ * [r604] NEWS: Update for release 2.0.6.
+
+2005-04-02 warnes
+
+ * [r601] TODO: Update TODO file.
+
+2005-03-31 warnes
+
+ * [r589] DESCRIPTION, NEWS: Update for 2.0.5 release
+
+2005-03-22 warnes
+
+ * [r578] DESCRIPTION, NEWS: Fixes to pass `R CMD check'.
+ * [r575] gregmisc, gregmisc/DESCRIPTION.in,
+ gregmisc/DESCRIPTION.standalone, gregmisc/R, gregmisc/R/First.R:
+ Create backwords compatibility sub-package 'gregmisc' which loads
+ the other packages and warns the user.
+
+2005-02-25 warnes
+
+ * [r560] DESCRIPTION, NEWS: Update for release 2.0.3
+ * [r558] .tnatr:fnmap, DESCRIPTION: Add drop.levels, frameApply to
+ namespace export.
+
+2005-02-04 nj7w
+
+ * [r537] .tnatr:fnmap: Initial revision
+
+2005-01-28 warnes
+
+ * [r525] DESCRIPTION: Update version number and date.
+
+2004-09-27 warneg
+
+ * [r463] inst, inst/doc, inst/doc/Rnews.dtx, inst/doc/Rnews.sty,
+ inst/doc/gregmisc.tex: Move gdata/inst/doc/* to inst/doc/*
+ * [r461] .Rhistory, DESCRIPTION: Updated to pass R CMD check.
+
+2004-09-03 warneg
+
+ * [r445] DESCRIPTION, NEWS, TODO: *** empty log message ***
+
+2004-09-02 warneg
+
+ * [r442] .Rhistory: Initial revision
+
+2004-07-16 warnes
+
+ * [r421] TODO: *** empty log message ***
+
+2004-06-09 warnes
+
+ * [r373] NEWS: Belated update for 1.11.2.
+
+2004-06-08 warnes
+
+ * [r368] DESCRIPTION: Add better acknowledgement of authors.
+
+2004-06-05 warnes
+
+ * [r366] NEWS: Update NEWS file for release 1.11.1.
+ * [r361] DESCRIPTION, NEWS: - Merge Makefile.win into Makefile.
+ Makefile.win now just redirects
+ to Makefile.
+ - Update xls2csv.bat and xls2csv shell script to correctly obtain
+ thier installion path and infer the location of the perl code and
+ libraries.
+ - The xls2csv.pl script now assumes that the libraries it needs
+ are
+ installed into the same directory where it is.
+
+2004-05-27 warnes
+
+ * [r356] NEWS: Clarify text describing xls2csv scripts.
+ * [r355] DESCRIPTION, NEWS: Updated for release.
+
+2004-05-26 warnes
+
+ * [r348] NEWS: Update for 1.11.0 release.
+
+2004-05-25 warnes
+
+ * [r331] DESCRIPTION: Bump version number to 1.11.0 to reflect the
+ actual 'production'
+ status of the package.
+
+2004-04-13 warnes
+
+ * [r316] DESCRIPTION: Update for 0.10.2
+ * [r315] NEWS: Updated for 0.10.2
+
+2004-03-30 warnes
+
+ * [r311] DESCRIPTION: - Fix bug in textplot() reported by Wright,
+ Kevin <kev...@pi...>.
+
+2004-03-26 warnes
+
+ * [r310] NEWS: Updated for release 0.10.0.
+ * [r309] TODO: Change proposed names of new packages.
+ * [r308] DESCRIPTION: - Add Lodewijk Bonebakker to list of authors
+ - Improve description text
+ - Note dependency on R 1.9.0.
+
+2004-02-18 warnes
+
+ * [r291] TODO: Add need for split into sub-package.
+
+2004-02-02 warnes
+
+ * [r286] DESCRIPTION: Update version number for new release.
+
+2004-01-21 warnes
+
+ * [r284] TODO: Add TODO to contain 'to do' list.
+ * [r280] DESCRIPTION: Updated for 0.8.8 release.
+
+2003-12-03 warnes
+
+ * [r255] DESCRIPTION: - Updated for version 0.8.7
+
+2003-11-24 warnes
+
+ * [r241] DESCRIPTION: Updated for release.
+
+2003-11-10 warnes
+
+ * [r220] DESCRIPTION: - Add files contributed by Arni Magnusson
+ <arnima@u.washington.edu>. As well as some of my own.
+
+2003-05-20 warnes
+
+ * [r194] DESCRIPTION: - Added function trim() and assocated docs.
+
+2003-04-22 warnes
+
+ * [r192] DESCRIPTION: - Update version number.
+
+2003-04-04 warnes
+
+ * [r184] DESCRIPTION: - Version 0.8.3
+
+2003-03-08 warnes
+
+ * [r170] DESCRIPTION: - Bumped up version number.
+
+2003-03-07 warnes
+
+ * [r168] DESCRIPTION: - Minor changes to code to allow the package
+ to be provided as an
+ S-Plus chapter.
+
+2003-01-30 warnes
+
+ * [r162] DESCRIPTION: - New release.
+
+2003-01-02 warnes
+
+ * [r151] DESCRIPTION: Updated version number and added Kjetil to
+ list of contributors.
+
+2002-11-04 warnes
+
+ * [r144] DESCRIPTION: - Added dependency on R >= 1.6.0 due to code
+ in barplot2()
+ - Since MASS is now a dependency in DESCRIPTION, I removed the
+ now
+ redundant check for MASS in .First.lib().
+
+2002-10-30 warnes
+
+ * [r140] DESCRIPTION: Updated version number for 2002-10-29
+ release.
+
+2002-10-11 warnes
+
+ * [r134] DESCRIPTION: - Updated version number in DESCRIPTION.
+
+2002-09-30 warnes
+
+ * [r129] DESCRIPTION: - Updated version number after adding
+ rdirichlet() and ddirichlet()
+
+2002-09-24 warnes
+
+ * [r125] DESCRIPTION: Update version number after fixing bugs and
+ adding regression tests.
+ * [r123] DESCRIPTION: Updated to version 0.6.1, corresponding to
+ some bug fixes.
+
+2002-09-23 warnes
+
+ * [r116] DESCRIPTION: - Added CrossTable() and barplot2() code and
+ docs contributed by Marc Schwartz.
+ - Permit combinations() to be used when r>n provided
+ repeat.allowed=TRUE
+ - Bumped up version number
+
+2002-08-01 warnes
+
+ * [r114] DESCRIPTION: - Corrected documentation mismatch for ci,
+ ci.default.
+
+ - Replaced all occurences of '_' for assignment with '<-'.
+
+ - Replaced all occurences of 'T' or 'F' for 'TRUE' and 'FALSE'
+ with
+ the spelled out version.
+
+ - Updaded version number and date.
+
+2002-04-09 warneg
+
+ * [r109] DESCRIPTION: Checkin for version 0.5.3
+
+2002-03-26 warneg
+
+ * [r103] DESCRIPTION: Updated for version 0.5.1
+
+2001-12-17 warneg
+
+ * [r57] DESCRIPTION: Updated to include new functions and thier
+ contributors.
+
+2001-09-18 warneg
+
+ * [r18] DESCRIPTION: Release 0.3.2
+
+2001-09-01 warneg
+
+ * [r16] DESCRIPTION: Release 0.3.0
+
+2001-06-05 warneg
+
+ * [r5] DESCRIPTION: Updated with addition of concat.R and
+ concat.Rd.
+
+2001-05-30 warneg
+
+ * [r2] ., DESCRIPTION: Initial revision
+
Modified: trunk/gregmisc/inst/NEWS
===================================================================
--- trunk/gregmisc/inst/NEWS 2013-06-28 21:41:23 UTC (rev 1687)
+++ trunk/gregmisc/inst/NEWS 2013-06-28 21:44:19 UTC (rev 1688)
@@ -1,8 +1,13 @@
-
This file provides a brief list of major feature enhancements
associated with each package release. For a more detailed list of
changes see the ChangeLog file.
+Version 2.1.5
+-------------
+
+Use .onAttach() instead of .First.lib() to show startup message.
+
+
Version 2.0.6
-------------
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|
|
From: <wa...@us...> - 2013-06-28 21:41:25
|
Revision: 1687
http://sourceforge.net/p/r-gregmisc/code/1687
Author: warnes
Date: 2013-06-28 21:41:23 +0000 (Fri, 28 Jun 2013)
Log Message:
-----------
Move NEWS to inst/NEWS
Added Paths:
-----------
trunk/gregmisc/inst/NEWS
Removed Paths:
-------------
trunk/gregmisc/NEWS
Deleted: trunk/gregmisc/NEWS
===================================================================
--- trunk/gregmisc/NEWS 2013-06-28 21:37:23 UTC (rev 1686)
+++ trunk/gregmisc/NEWS 2013-06-28 21:41:23 UTC (rev 1687)
@@ -1,259 +0,0 @@
-
-This file provides a brief list of major feature enhancements
-associated with each package release. For a more detailed list of
-changes see the ChangeLog file.
-
-Version 2.0.6
--------------
-
-Bug fixes:
-
- * gplots::overplot() - Troels Ring <tr...@gv...> noted that
- overplot() was reporting
- Error in eval(expr, envir, enclos) : couldn't find
- function "lowess.formula"
- Fixed by changing reference to gplots:::lowess.formula in
- panel.overplot.
-
-Version 2.0.5
--------------
-
-New functions:
-
- * gmodels::coefFrame() - Fits a model to each subgroup defined by
- \code{by}, then returns a data frame with one row for each
- fit and one column for each parameter.
-
-Function changes:
-
- * frameApply() and drop.levels() have been moved to the
- gdata package from the gtools package.
-
- * gtools::quantcut() now properly handles cases where
- where more than one quantile obtains the same value.
-
-Bug fixes:
-
- * Minor change to avoid 'R CMD check' warnings generated by
- example code for the depreciated gdata::elem() function.
-
- * Fixed a bug in gtools::mixedsort when only a single value
- is provided.
-
-
-Version 2.0.4
--------------
-
-New functions:
-
- * ConvertMedUnits.R - Convert Medical measurements between
- International Standard (SI) and US 'Conventional' Units.
-
-New data:
-
- * MedUnits data set provides conversions between American
- US 'Conventional' and Standard Intertional (SI) medical
- units.
-
-Bug fixes:
-
- * Fix behavior of ll() with some data types.
-
- * Minor update to remove 'R CMD check' warnings.
-
-New sub-package:
-
- * Add a 'gregmisc' subpackage. This package simply loads
- all of the other packages. This should help individuals
- who are used to the old gregmisc package..
-
-
-Version 2.0.3
--------------
-
-New functions:
-
- * gdata::unmatrix - function for converting a matrix into a
- well-labeled vector
-
- * gtools::frameApply - Apply a functon the the rows of a data
- frame.
-
- * gtools::drop.levels remove unused factor levels from the
- factors contained in a data frame
-
-Feature enhancements:
-
-
- * gdata::ll - Now handles list-like objects, including data
- frames
-
- * gmodels::CrossTable - Added 'SPSS' format, as suggested by
- Dirk Enzmann
-
- * gplots::heatmap.2 -
-
- - Add new parameters for controlling color key -
-
- - New parameter to allow control of height and width of
- separator box
-
- * gmodels::CrossTable - Show Chisquare contribution of each
- cell, suggested by Greg Snow.
-
- * gdata::read.xls - Add ability to specify the perl executable
- and path.
-
-Bug fixes:
-
- * gplots::heatmap2 -
-
- - cell note layout was incorrect
-
- - Fix handling of rowsep::colsep.
-
- - Ignore missing values when computing symmetric range.
-
- * gplots::bandplot - Fix problem in passing graphical parameters
-
- * add import of 'reorder' and 'na.omit' from 'stats' package
- to satisfy packages depending on us.
-
-Other changes:
-
- * gplots::textplot - Code can be simplified because R now
- supports selecting a fixed width font.
-
- * gplots::plotmeans - Add more extensive example.
-
- * gdata::elem - depreciated in favor of gdata::ll
-
-
-Version 2.0.0
--------------
-
-First release as a package bundle. Functions are now segregated into four topic-specific packages:
-
- gplots
- gmodels
- gtool
- gmisc
-
-Thanks to Nitin Jain for doing most of the work of the conversion to
-a package bundle.
-
-
-Version 1.11.2
---------------
-
-- Simpify and fix the build process on both *nix and Windows by simply
- providing pre-built perl modules.
-
-
-Version 1.11.1
---------------
-
-- Fix building of of gregmisc on Windows:
-
- Runtime Requirements:
-
- ActiveState perl in the PATH
-
- Build Requirements:
-
- ActiveState perl and Microsoft's NMAKE utility in the PATH
- (A self extracting archive file containing NMAKE is available from
- <ftp://ftp.microsoft.com/Softlib/MSLFILES/nmake15.exe>.)
-
- This was tested on Windows2000 Pro with ActivePerl-5.8.3.809-MSWin32-x86.msi
-
-- (Hopefully) Fix building on Linux with Perl 5.8.0. Perl 5.8.3 is
- reported to work without error on Linux, as does perl 5.6.1 on Solaris.
-
-Version 1.11.0
---------------
-
-- Bump version number to 1.11.0 to better reflect the production
- status of the package.
-
-- Add read.xls(), a function to read Microsoft Excel files by
- translating them to csv files via the xls2csv.pl script, which has
- also been added to the package. I've provided scripts to run xls2csv:
-
- Unix systems: $PACKAGE$/gregmisc/bin/xls2csv
- MS-Windows: $PACKAGE$/gregmisc/bin/xls2csv.bat
-
- or you can execute the perl code directly:
-
- $PACKAGE$/gregmisc/perl/xls2csv.pl
-
- The perl script explicitly loads its libraries from the installed
- gregmisc so you don't have to worry about paths. To get usage and
- parameter information, simply execute the script via any of the
- above methods without providing any command-line arguments.
-
-
-- Improvements to CrossTable() by Marc Schwartz <MSc...@Me...>
-
-- Improvements to ooplot() by Lodewijk Bonebakker <bon...@co...>
-
-- plotCI() and plotmeans() now have improved argument handling.
-
-- The running() function now has an additional parameter `simplify'
- which controls whether the returned values are simplified into a
- vector/matrix or left as a list.
-
-- A makefile that will download and attempt to install all available
- packages from CRAN and Bioconductor is now provided in
- $PACKAGE$/gregmisc/tools/
-
-- space() can now space points along the 'y' dimension.
-
-- Fix an error in the permutations code for repeats.allow=T and r>2.
- Both the bug report and fix are from Elizabeth Purdom
- <ep...@st...>.
-
-- Various fixes for compatibility with R 1.9.X.
-
-Version 0.10.2
---------------
-
-- Fixed latex warning.
-
-- Fixed smartlegend() positioning when x and/or y axis are log-scale.
-
-- Add function remove.vars().
-
-Version 0.10.1
---------------
-
-- Fixed bug in textplot() reported by Kevin Wright <kevin.d.wright at pioneer
- dot com>.
-
-Version 0.10.0
---------------
-
-- Now works with and requires R 1.9.0
-
-- Added ooplot() function that mimics Open-Office style plots.
- Contributed by Lodewijk Bonebakker <bon...@co...>
-
-- Fixed bug in running() that arose when the called function
- really neaded a minimum number of elements to work on.
-
-- Added several new features to running(), it can now allow sequences
- shorter than the requested width to be present at the front, the back,
- or on both sides of the full lenth sequences. This allows one to
- align the data so that the window is before, after, or around the
- indexed point.
-
-- Add enhancements to estimable() provided by S\xF8ren H\xF8jsgaard
- <so...@ag...>:
-
- The estimable function now
- 1) also works on geese and gee objects and
- 2) can test hypotheses af the forb L * beta = beta0 both as a
- single Wald test and row-wise for each row in L.
-
-- Add colorpanel function, which generates a smoothly varying band of
- colors over a three color range (lo, mid, high).
Copied: trunk/gregmisc/inst/NEWS (from rev 1649, trunk/gregmisc/NEWS)
===================================================================
--- trunk/gregmisc/inst/NEWS (rev 0)
+++ trunk/gregmisc/inst/NEWS 2013-06-28 21:41:23 UTC (rev 1687)
@@ -0,0 +1,259 @@
+
+This file provides a brief list of major feature enhancements
+associated with each package release. For a more detailed list of
+changes see the ChangeLog file.
+
+Version 2.0.6
+-------------
+
+Bug fixes:
+
+ * gplots::overplot() - Troels Ring <tr...@gv...> noted that
+ overplot() was reporting
+ Error in eval(expr, envir, enclos) : couldn't find
+ function "lowess.formula"
+ Fixed by changing reference to gplots:::lowess.formula in
+ panel.overplot.
+
+Version 2.0.5
+-------------
+
+New functions:
+
+ * gmodels::coefFrame() - Fits a model to each subgroup defined by
+ \code{by}, then returns a data frame with one row for each
+ fit and one column for each parameter.
+
+Function changes:
+
+ * frameApply() and drop.levels() have been moved to the
+ gdata package from the gtools package.
+
+ * gtools::quantcut() now properly handles cases where
+ where more than one quantile obtains the same value.
+
+Bug fixes:
+
+ * Minor change to avoid 'R CMD check' warnings generated by
+ example code for the depreciated gdata::elem() function.
+
+ * Fixed a bug in gtools::mixedsort when only a single value
+ is provided.
+
+
+Version 2.0.4
+-------------
+
+New functions:
+
+ * ConvertMedUnits.R - Convert Medical measurements between
+ International Standard (SI) and US 'Conventional' Units.
+
+New data:
+
+ * MedUnits data set provides conversions between American
+ US 'Conventional' and Standard Intertional (SI) medical
+ units.
+
+Bug fixes:
+
+ * Fix behavior of ll() with some data types.
+
+ * Minor update to remove 'R CMD check' warnings.
+
+New sub-package:
+
+ * Add a 'gregmisc' subpackage. This package simply loads
+ all of the other packages. This should help individuals
+ who are used to the old gregmisc package..
+
+
+Version 2.0.3
+-------------
+
+New functions:
+
+ * gdata::unmatrix - function for converting a matrix into a
+ well-labeled vector
+
+ * gtools::frameApply - Apply a functon the the rows of a data
+ frame.
+
+ * gtools::drop.levels remove unused factor levels from the
+ factors contained in a data frame
+
+Feature enhancements:
+
+
+ * gdata::ll - Now handles list-like objects, including data
+ frames
+
+ * gmodels::CrossTable - Added 'SPSS' format, as suggested by
+ Dirk Enzmann
+
+ * gplots::heatmap.2 -
+
+ - Add new parameters for controlling color key -
+
+ - New parameter to allow control of height and width of
+ separator box
+
+ * gmodels::CrossTable - Show Chisquare contribution of each
+ cell, suggested by Greg Snow.
+
+ * gdata::read.xls - Add ability to specify the perl executable
+ and path.
+
+Bug fixes:
+
+ * gplots::heatmap2 -
+
+ - cell note layout was incorrect
+
+ - Fix handling of rowsep::colsep.
+
+ - Ignore missing values when computing symmetric range.
+
+ * gplots::bandplot - Fix problem in passing graphical parameters
+
+ * add import of 'reorder' and 'na.omit' from 'stats' package
+ to satisfy packages depending on us.
+
+Other changes:
+
+ * gplots::textplot - Code can be simplified because R now
+ supports selecting a fixed width font.
+
+ * gplots::plotmeans - Add more extensive example.
+
+ * gdata::elem - depreciated in favor of gdata::ll
+
+
+Version 2.0.0
+-------------
+
+First release as a package bundle. Functions are now segregated into four topic-specific packages:
+
+ gplots
+ gmodels
+ gtool
+ gmisc
+
+Thanks to Nitin Jain for doing most of the work of the conversion to
+a package bundle.
+
+
+Version 1.11.2
+--------------
+
+- Simpify and fix the build process on both *nix and Windows by simply
+ providing pre-built perl modules.
+
+
+Version 1.11.1
+--------------
+
+- Fix building of of gregmisc on Windows:
+
+ Runtime Requirements:
+
+ ActiveState perl in the PATH
+
+ Build Requirements:
+
+ ActiveState perl and Microsoft's NMAKE utility in the PATH
+ (A self extracting archive file containing NMAKE is available from
+ <ftp://ftp.microsoft.com/Softlib/MSLFILES/nmake15.exe>.)
+
+ This was tested on Windows2000 Pro with ActivePerl-5.8.3.809-MSWin32-x86.msi
+
+- (Hopefully) Fix building on Linux with Perl 5.8.0. Perl 5.8.3 is
+ reported to work without error on Linux, as does perl 5.6.1 on Solaris.
+
+Version 1.11.0
+--------------
+
+- Bump version number to 1.11.0 to better reflect the production
+ status of the package.
+
+- Add read.xls(), a function to read Microsoft Excel files by
+ translating them to csv files via the xls2csv.pl script, which has
+ also been added to the package. I've provided scripts to run xls2csv:
+
+ Unix systems: $PACKAGE$/gregmisc/bin/xls2csv
+ MS-Windows: $PACKAGE$/gregmisc/bin/xls2csv.bat
+
+ or you can execute the perl code directly:
+
+ $PACKAGE$/gregmisc/perl/xls2csv.pl
+
+ The perl script explicitly loads its libraries from the installed
+ gregmisc so you don't have to worry about paths. To get usage and
+ parameter information, simply execute the script via any of the
+ above methods without providing any command-line arguments.
+
+
+- Improvements to CrossTable() by Marc Schwartz <MSc...@Me...>
+
+- Improvements to ooplot() by Lodewijk Bonebakker <bon...@co...>
+
+- plotCI() and plotmeans() now have improved argument handling.
+
+- The running() function now has an additional parameter `simplify'
+ which controls whether the returned values are simplified into a
+ vector/matrix or left as a list.
+
+- A makefile that will download and attempt to install all available
+ packages from CRAN and Bioconductor is now provided in
+ $PACKAGE$/gregmisc/tools/
+
+- space() can now space points along the 'y' dimension.
+
+- Fix an error in the permutations code for repeats.allow=T and r>2.
+ Both the bug report and fix are from Elizabeth Purdom
+ <ep...@st...>.
+
+- Various fixes for compatibility with R 1.9.X.
+
+Version 0.10.2
+--------------
+
+- Fixed latex warning.
+
+- Fixed smartlegend() positioning when x and/or y axis are log-scale.
+
+- Add function remove.vars().
+
+Version 0.10.1
+--------------
+
+- Fixed bug in textplot() reported by Kevin Wright <kevin.d.wright at pioneer
+ dot com>.
+
+Version 0.10.0
+--------------
+
+- Now works with and requires R 1.9.0
+
+- Added ooplot() function that mimics Open-Office style plots.
+ Contributed by Lodewijk Bonebakker <bon...@co...>
+
+- Fixed bug in running() that arose when the called function
+ really neaded a minimum number of elements to work on.
+
+- Added several new features to running(), it can now allow sequences
+ shorter than the requested width to be present at the front, the back,
+ or on both sides of the full lenth sequences. This allows one to
+ align the data so that the window is before, after, or around the
+ indexed point.
+
+- Add enhancements to estimable() provided by S\xF8ren H\xF8jsgaard
+ <so...@ag...>:
+
+ The estimable function now
+ 1) also works on geese and gee objects and
+ 2) can test hypotheses af the forb L * beta = beta0 both as a
+ single Wald test and row-wise for each row in L.
+
+- Add colorpanel function, which generates a smoothly varying band of
+ colors over a three color range (lo, mid, high).
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <wa...@us...> - 2013-06-28 21:37:26
|
Revision: 1686
http://sourceforge.net/p/r-gregmisc/code/1686
Author: warnes
Date: 2013-06-28 21:37:23 +0000 (Fri, 28 Jun 2013)
Log Message:
-----------
Rename .First.lib to .onAttach
Added Paths:
-----------
trunk/gregmisc/R/onAttach.R
Removed Paths:
-------------
trunk/gregmisc/R/First.R
Deleted: trunk/gregmisc/R/First.R
===================================================================
--- trunk/gregmisc/R/First.R 2013-06-28 21:31:14 UTC (rev 1685)
+++ trunk/gregmisc/R/First.R 2013-06-28 21:37:23 UTC (rev 1686)
@@ -1,11 +0,0 @@
-# $Id$
-
-.First.lib <- function(libname, pkgname)
-{
- packageStartupMessage(
- "All functionality of the `gregmisc' package has been moved",
- "into the four 'g' packages: gdata, gtools, gmodels, and gplots. ",
- "This package is retained to make it easy to install and load",
- "the full set. Please consider loading these packages directly."
- )
-}
Copied: trunk/gregmisc/R/onAttach.R (from rev 1649, trunk/gregmisc/R/First.R)
===================================================================
--- trunk/gregmisc/R/onAttach.R (rev 0)
+++ trunk/gregmisc/R/onAttach.R 2013-06-28 21:37:23 UTC (rev 1686)
@@ -0,0 +1,11 @@
+# $Id$
+
+.onAttach <- function(libname, pkgname)
+{
+ packageStartupMessage(
+ "All functionality of the `gregmisc' package has been moved",
+ "into the four 'g' packages: gdata, gtools, gmodels, and gplots. ",
+ "This package is retained to make it easy to install and load",
+ "the full set. Please consider loading these packages directly."
+ )
+}
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <wa...@us...> - 2013-06-28 21:31:17
|
Revision: 1685
http://sourceforge.net/p/r-gregmisc/code/1685
Author: warnes
Date: 2013-06-28 21:31:14 +0000 (Fri, 28 Jun 2013)
Log Message:
-----------
Update NEWS for gdata 2.13.2
Modified Paths:
--------------
trunk/gdata/inst/NEWS
Modified: trunk/gdata/inst/NEWS
===================================================================
--- trunk/gdata/inst/NEWS 2013-06-28 21:24:52 UTC (rev 1684)
+++ trunk/gdata/inst/NEWS 2013-06-28 21:31:14 UTC (rev 1685)
@@ -1,3 +1,13 @@
+Changes in 2.13.2 (2013-06-28)
+------------------------------
+
+Enhancements:
+
+- Modify ll() function to use on.exit() to ensure that detach() occurs
+ after attach() even when an error is encoundered during execution.
+
+- Working of deprecation warning message in aggregate.table clarified.
+
Changes in 2.13.1 (2013-03-24)
------------------------------
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <wa...@us...> - 2013-06-28 21:24:55
|
Revision: 1684
http://sourceforge.net/p/r-gregmisc/code/1684
Author: warnes
Date: 2013-06-28 21:24:52 +0000 (Fri, 28 Jun 2013)
Log Message:
-----------
Minor update to tests/*.Rout.save
Modified Paths:
--------------
trunk/gdata/tests/test.read.xls.Rout.save
trunk/gdata/tests/tests.write.fwf.Rout.save
Modified: trunk/gdata/tests/test.read.xls.Rout.save
===================================================================
--- trunk/gdata/tests/test.read.xls.Rout.save 2013-06-28 21:22:40 UTC (rev 1683)
+++ trunk/gdata/tests/test.read.xls.Rout.save 2013-06-28 21:24:52 UTC (rev 1684)
@@ -1,8 +1,7 @@
-R version 2.15.3 Patched (2013-03-13 r62287) -- "Security Blanket"
+R version 3.0.1 (2013-05-16) -- "Good Sport"
Copyright (C) 2013 The R Foundation for Statistical Computing
-ISBN 3-900051-07-0
-Platform: i386-apple-darwin9.8.0/i386 (32-bit)
+Platform: i686-pc-linux-gnu (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
@@ -23,11 +22,11 @@
Attaching package: 'gdata'
-The following object(s) are masked from 'package:stats':
+The following object is masked from 'package:stats':
nobs
-The following object(s) are masked from 'package:utils':
+The following object is masked from 'package:utils':
object.size
@@ -591,7 +590,7 @@
+
+ data <- read.xls(exampleFile2007, sheet="Sheet Second") # and by name
+ print(data)
-+
++
+ # load the third worksheet, skipping the first two non-data lines...
+ data <- read.xls(exampleFile2007, sheet="Sheet with initial text", skip=2)
+ print(data)
@@ -673,24 +672,14 @@
> latin1FileX <- file.path(path.package('gdata'),'xls', 'latin-1.xlsx')
>
> example.latin1 <- read.xls(latin1File, fileEncoding='latin1')
-Warning messages:
-1: In read.table(file = file, header = header, sep = sep, quote = quote, :
- invalid input found on input connection '/var/folders/dG/dGl84jhkHAe+alfrBBIYKE+++TQ/-Tmp-//RtmpGQaXAS/file4640360d0390.csv'
-2: In read.table(file = file, header = header, sep = sep, quote = quote, :
- incomplete final line found by readTableHeader on '/var/folders/dG/dGl84jhkHAe+alfrBBIYKE+++TQ/-Tmp-//RtmpGQaXAS/file4640360d0390.csv'
>
> if( 'XLSX' %in% xlsFormats() )
+ {
+ example.latin1.x <- read.xls(latin1FileX, fileEncoding='latin1')
+ }
-Warning messages:
-1: In read.table(file = file, header = header, sep = sep, quote = quote, :
- invalid input found on input connection '/var/folders/dG/dGl84jhkHAe+alfrBBIYKE+++TQ/-Tmp-//RtmpGQaXAS/file46401064fea9.csv'
-2: In read.table(file = file, header = header, sep = sep, quote = quote, :
- incomplete final line found by readTableHeader on '/var/folders/dG/dGl84jhkHAe+alfrBBIYKE+++TQ/-Tmp-//RtmpGQaXAS/file46401064fea9.csv'
>
>
>
> proc.time()
user system elapsed
- 6.693 0.979 7.921
+ 10.072 1.468 12.094
Modified: trunk/gdata/tests/tests.write.fwf.Rout.save
===================================================================
--- trunk/gdata/tests/tests.write.fwf.Rout.save 2013-06-28 21:22:40 UTC (rev 1683)
+++ trunk/gdata/tests/tests.write.fwf.Rout.save 2013-06-28 21:24:52 UTC (rev 1684)
@@ -1,8 +1,7 @@
-R version 2.15.3 Patched (2013-03-13 r62287) -- "Security Blanket"
+R version 3.0.1 (2013-05-16) -- "Good Sport"
Copyright (C) 2013 The R Foundation for Statistical Computing
-ISBN 3-900051-07-0
-Platform: i386-apple-darwin9.8.0/i386 (32-bit)
+Platform: i686-pc-linux-gnu (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
@@ -30,11 +29,11 @@
Attaching package: 'gdata'
-The following object(s) are masked from 'package:stats':
+The following object is masked from 'package:stats':
nobs
-The following object(s) are masked from 'package:utils':
+The following object is masked from 'package:utils':
object.size
@@ -232,4 +231,4 @@
>
> proc.time()
user system elapsed
- 0.830 0.090 0.906
+ 1.464 0.152 1.631
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|
|
From: <wa...@us...> - 2013-06-28 21:22:42
|
Revision: 1683
http://sourceforge.net/p/r-gregmisc/code/1683
Author: warnes
Date: 2013-06-28 21:22:40 +0000 (Fri, 28 Jun 2013)
Log Message:
-----------
Add on.exit() handler to ensure a matching detach occurs when attach is used in ll()
Modified Paths:
--------------
trunk/gdata/R/ll.R
Modified: trunk/gdata/R/ll.R
===================================================================
--- trunk/gdata/R/ll.R 2013-06-28 20:29:06 UTC (rev 1682)
+++ trunk/gdata/R/ll.R 2013-06-28 21:22:40 UTC (rev 1683)
@@ -38,7 +38,7 @@
{
if(length(pos) == 0)
return(data.frame())
- attach(pos, pos=2, warn.conflicts=FALSE)
+ attach(pos, pos=2, warn.conflicts=FALSE); on.exit(detach(pos=2))
original.rank <- rank(names(pos))
was.list <- TRUE
pos <- 2
@@ -79,7 +79,7 @@
}
if(was.list)
{
- detach(pos=2)
+ detach(pos=2); on.exit()
if(!sort)
object.frame <- object.frame[original.rank, ]
}
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <wa...@us...> - 2013-06-28 20:29:10
|
Revision: 1682
http://sourceforge.net/p/r-gregmisc/code/1682
Author: warnes
Date: 2013-06-28 20:29:06 +0000 (Fri, 28 Jun 2013)
Log Message:
-----------
Update for gdata 2.13.2
Modified Paths:
--------------
trunk/gdata/DESCRIPTION
Modified: trunk/gdata/DESCRIPTION
===================================================================
--- trunk/gdata/DESCRIPTION 2013-06-28 20:26:56 UTC (rev 1681)
+++ trunk/gdata/DESCRIPTION 2013-06-28 20:29:06 UTC (rev 1682)
@@ -4,11 +4,11 @@
Depends: R (>= 2.13.0)
SystemRequirements: perl
Imports: gtools
-Version: 2.13.1
-Date: 2013-03-24
-Author: Gregory R. Warnes, with contributions from Liviu Andronic, Ben
- Bolker, Gregor Gorjanc, Gabor Grothendieck, Ales Korosec,
- Thomas Lumley, Don MacQueen, Arni Magnusson, Jim Rogers, and
- others
-Maintainer: Gregory Warnes <gr...@wa...>
+Version: 2.13.2
+Date: 2013-06-28
+Author: Gregory R. Warnes, Ben Bolker, Gregor Gorjanc, Gabor
+ Grothendieck, Ales Korosec, Thomas Lumley, Don MacQueen, Arni
+ Magnusson, Jim Rogers, and others
+Maintainer: Gregory R. Warnes <gr...@wa...>
License: GPL-2
+NeedsCompilation: no
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From: <wa...@us...> - 2013-06-28 20:27:00
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Revision: 1681
http://sourceforge.net/p/r-gregmisc/code/1681
Author: warnes
Date: 2013-06-28 20:26:56 +0000 (Fri, 28 Jun 2013)
Log Message:
-----------
Improve deprecated message
Modified Paths:
--------------
trunk/gdata/R/aggregate.table.R
Modified: trunk/gdata/R/aggregate.table.R
===================================================================
--- trunk/gdata/R/aggregate.table.R 2013-06-28 15:06:46 UTC (rev 1680)
+++ trunk/gdata/R/aggregate.table.R 2013-06-28 20:26:56 UTC (rev 1681)
@@ -1,8 +1,8 @@
# $Id$
-aggregate.table <- function(x, by1, by2, FUN=mean, ... )
+aggregate.table <- function(x, by1, by2, FUN=mean, ...)
{
- warning("'aggregate.table' is depreciated.",
+ warning("'aggregate.table' is deprecated and will be removed in a future version of the gdata package. ",
"Please use 'tapply(X=",
deparse(substitute(x)),
", INDEX=list(",
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From: <wa...@us...> - 2013-06-28 15:06:50
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Revision: 1680
http://sourceforge.net/p/r-gregmisc/code/1680
Author: warnes
Date: 2013-06-28 15:06:46 +0000 (Fri, 28 Jun 2013)
Log Message:
-----------
Update PDF file, including new email addresses
Modified Paths:
--------------
trunk/gplots/inst/doc/BalloonPlot.pdf
Modified: trunk/gplots/inst/doc/BalloonPlot.pdf
===================================================================
(Binary files differ)
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From: <wa...@us...> - 2013-06-27 21:23:43
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Revision: 1679
http://sourceforge.net/p/r-gregmisc/code/1679
Author: warnes
Date: 2013-06-27 21:23:40 +0000 (Thu, 27 Jun 2013)
Log Message:
-----------
Update for gplots 2.11.3
Modified Paths:
--------------
trunk/gplots/inst/NEWS
Modified: trunk/gplots/inst/NEWS
===================================================================
--- trunk/gplots/inst/NEWS 2013-06-27 21:16:38 UTC (rev 1678)
+++ trunk/gplots/inst/NEWS 2013-06-27 21:23:40 UTC (rev 1679)
@@ -1,3 +1,18 @@
+Release 2.11.3 - 2013-06-27
+---------------------------
+
+Enhancements:
+
+- Modify sinkplot() to use a local environment rather than the global
+ environment, to conform to CRAN policies.
+
+Bug Fixes:
+
+- Fixed typo/spelling error in plotmeans() man page.
+
+Other changes
+
+
Release 2.11.2 - 2013-03-24
---------------------------
@@ -6,6 +21,10 @@
- Add ci.width argument to barplot2() to allow varying the length of
the 't' at the end of confidence interval bars.
+Bug Fixes:
+
+- Fix error in heatmap.2 when colsep argument had length 1.
+
Updates:
- Update manual page for lowess.default() to
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From: <wa...@us...> - 2013-06-27 21:16:41
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Revision: 1678
http://sourceforge.net/p/r-gregmisc/code/1678
Author: warnes
Date: 2013-06-27 21:16:38 +0000 (Thu, 27 Jun 2013)
Log Message:
-----------
Update for release 2.11.3
Modified Paths:
--------------
trunk/gplots/DESCRIPTION
Modified: trunk/gplots/DESCRIPTION
===================================================================
--- trunk/gplots/DESCRIPTION 2013-06-27 21:14:31 UTC (rev 1677)
+++ trunk/gplots/DESCRIPTION 2013-06-27 21:16:38 UTC (rev 1678)
@@ -1,16 +1,15 @@
Package: gplots
Title: Various R programming tools for plotting data
Description: Various R programming tools for plotting data
-Depends: R (>= 2.10), gtools, gdata, stats, caTools, grid, KernSmooth, MASS,
- datasets
+Depends: R (>= 3.0), gtools, gdata, stats, caTools, grid, KernSmooth,
+ MASS, datasets
Recommends: grid
Suggests: gtools
-Version: 2.11.2
-Date: 2012-03-24
-Author: Gregory R. Warnes. Includes R source code and/or documentation
- contributed by (in alphabetical order):
- Ben Bolker, Lodewijk Bonebakker, Robert Gentleman, Wolfgang
- Huber Andy Liaw, Thomas Lumley, Martin Maechler, Arni
- Magnusson, Steffen Moeller, Marc Schwartz, Bill Venables
+Version: 2.11.3
+Date: 2013-06-27
+Author: Gregory R. Warnes, Ben Bolker, Lodewijk Bonebakker, Robert
+ Gentleman, Wolfgang Huber Andy Liaw, Thomas Lumley, Martin
+ Maechler, Arni Magnusson, Steffen Moeller, Marc Schwartz, Bill
+ Venables
Maintainer: Gregory R. Warnes <gr...@wa...>
License: GPL-2
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