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[R-gregmisc-users] SF.net SVN: r-gregmisc:[2007] trunk/gplots/man
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From: <wa...@us...> - 2015-05-01 17:47:44
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Revision: 2007
http://sourceforge.net/p/r-gregmisc/code/2007
Author: warnes
Date: 2015-05-01 17:47:42 +0000 (Fri, 01 May 2015)
Log Message:
-----------
Mark boxplot.n and() plot.lm2() as defunct.
Modified Paths:
--------------
trunk/gplots/man/gplots-deprecated.Rd
trunk/gplots/man/lmplot2.Rd
Added Paths:
-----------
trunk/gplots/man/gplots-defunct.Rd
Removed Paths:
-------------
trunk/gplots/man/smartlegend.Rd
Added: trunk/gplots/man/gplots-defunct.Rd
===================================================================
--- trunk/gplots/man/gplots-defunct.Rd (rev 0)
+++ trunk/gplots/man/gplots-defunct.Rd 2015-05-01 17:47:42 UTC (rev 2007)
@@ -0,0 +1,51 @@
+\name{gplots-deprecated}
+\alias{boxplot.n}
+\alias{plot.lm2}
+\title{Defunct functions}
+\description{
+ These funcntion are defunct and have been removed from the gplots package.
+}
+\usage{
+ boxplot.n(..., top=FALSE, shrink=1, textcolor=NULL)
+ plot.lm2(
+ x,
+ which = 1:5,
+ caption = c("Residuals vs Fitted", "Normal Q-Q plot",
+ "Scale-Location plot", "Cook's distance plot"),
+ panel = panel.smooth,
+ sub.caption = deparse(x$call),
+ main = "",
+ ask,
+ ...,
+ id.n = 3,
+ labels.id = names(residuals(x)),
+ cex.id = 0.75,
+ band=TRUE,
+ rug=TRUE,
+ width=1/10,
+ max.n=5000
+ )
+}
+\arguments{
+ \item{\dots}{see man page for the corresponding replacement function}
+ \item{top, shrink, textcolor}{See man page for
+ \code{\link{boxplot2}}.}
+ \item{x, which, caption, panel, sub.caption, main, ask, id.n,
+ labels.id, cex.id, band, rug, width, max.n}{See man page for
+ \code{\link{lmplot2}}.}
+}
+\details{
+These functions are no longer available. Please refer to the manual page
+for the replacement function:
+ \itemize{
+ \item \code{boxplot.n} has been replaced by \code{\link{boxplot2}}
+ \item \code{plot.lm2} has been replaced by \code{\link{lmplot2}}
+ }
+}
+\author{Gregory R. Warnes \email{gr...@wa...}}
+\seealso{
+ \code{\link{boxplot2}},
+ \code{\link{lmplot2}},
+ \code{\link[base]{Defunct}}
+}
+\keyword{misc}
Modified: trunk/gplots/man/gplots-deprecated.Rd
===================================================================
--- trunk/gplots/man/gplots-deprecated.Rd 2015-05-01 17:44:30 UTC (rev 2006)
+++ trunk/gplots/man/gplots-deprecated.Rd 2015-05-01 17:47:42 UTC (rev 2007)
@@ -1,52 +1,30 @@
\name{gplots-deprecated}
-\alias{boxplot.n}
-\alias{plot.lm2}
+\alias{deprecated}
\title{Deprecated functions}
\description{
These funcntion have been deprecated and will be removed in future
releases of gplots.
}
\usage{
- boxplot.n(..., top=FALSE, shrink=1, textcolor=NULL)
- plot.lm2(
- x,
- which = 1:5,
- caption = c("Residuals vs Fitted", "Normal Q-Q plot",
- "Scale-Location plot", "Cook's distance plot"),
- panel = panel.smooth,
- sub.caption = deparse(x$call),
- main = "",
- ask,
+smartlegend(x = c("left", "center", "right"),
+ y = c("top", "center", "bottom"),
...,
- id.n = 3,
- labels.id = names(residuals(x)),
- cex.id = 0.75,
- band=TRUE,
- rug=TRUE,
- width=1/10,
- max.n=5000
- )
+ inset = 0.05)
}
\arguments{
- \item{\dots}{see man page for the corresponding replacement function}
- \item{top, shrink, textcolor}{See man page for
- \code{\link{boxplot2}}.}
- \item{x, which, caption, panel, sub.caption, main, ask, id.n,
- labels.id, cex.id, band, rug, width, max.n}{See man page for
- \code{\link{lmplot2}}.}
+ \item{x, y, inset, \dots}{see man page for the corresponding replacement function}
}
\details{
These functions have been deprecated. Please refer to the manual page
for the replacement function:
\itemize{
- \item \code{boxplot.n} has been replaced by \code{\link{boxplot2}}
- \item \code{plot.lm2} has been replaced by \code{\link{lmplot2}}
+ \item \code{smartlegend} is no longer needed because relative
+ positioning has been implemented in graphics::legend().
}
}
\author{Gregory R. Warnes \email{gr...@wa...}}
\seealso{
- \code{\link{boxplot2}},
- \code{\link{lmplot2}},
+ \code{\link{legend}},
\code{\link[base]{Deprecated}}
}
\keyword{misc}
Modified: trunk/gplots/man/lmplot2.Rd
===================================================================
--- trunk/gplots/man/lmplot2.Rd 2015-05-01 17:44:30 UTC (rev 2006)
+++ trunk/gplots/man/lmplot2.Rd 2015-05-01 17:47:42 UTC (rev 2007)
@@ -1,5 +1,6 @@
\name{lmplot2}
\alias{lmplot2}
+\alais{plot.lm2}
\title{
Plots to assess the goodness of fit for the linear model objects
}
@@ -29,7 +30,7 @@
}
\arguments{
\item{x}{lm object}
- \item{which}{Numerical values between 1 and 5, indicating which plots
+ \item{which}{Numerical values between 1 and 5, indicating which plots
to be shown. The codes are:
\describe{
\item{1}{Fitted vs residuals}
@@ -43,7 +44,7 @@
\item{panel}{ function to draw on the existing plot}
\item{sub.caption}{ SubCaption for the plots }
\item{main}{Main title of the plot}
- \item{ask}{whether interactive graphics or postscript }
+ \item{ask}{whether interactive graphics}
\item{\dots}{ parameters passed to \code{lmplot2}. }
\item{id.n}{ integer value, less than or equal to residuals of lm object }
\item{labels.id}{Names of the residuals of the lm object}
@@ -55,8 +56,8 @@
\item{max.n}{Maximum number of points to display in plots}
}
\note{
- This function replaces \code{boxplot.n}, which has been deprecated
- avoid potential problems with S3 method dispatching.
+ This function replaces \code{plot.lm2}, which has been deprecated
+ to avoid potential problems with S3 method dispatching.
}
\author{Gregory R. Warnes \email{gr...@wa...} and Nitin
Jain \email{nit...@pf...}}
Deleted: trunk/gplots/man/smartlegend.Rd
===================================================================
--- trunk/gplots/man/smartlegend.Rd 2015-05-01 17:44:30 UTC (rev 2006)
+++ trunk/gplots/man/smartlegend.Rd 2015-05-01 17:47:42 UTC (rev 2007)
@@ -1,45 +0,0 @@
-\name{smartlegend}
-\alias{smartlegend}
-\title{Place a legend in a specified logical ("top","bottom", "left",
- "right", etc) location on a plot.}
-\description{
- This function places a legend in a specified logical ("top","bottom", "left",
- "right", etc) location on a plot.
-}
-\usage{
-smartlegend(x = c("left", "center", "right"),
- y = c("top", "center", "bottom"),
- ..., inset = 0.05)
-}
-\arguments{
- \item{x}{horizontal location on the plot. One of "left", "center" or
- "right".}
- \item{y}{vertical location on the plot. One of "top", "center", or
- "bottom".}
- \item{\dots}{arguments for \code{legend}}
- \item{inset}{inset distance from the margin as a fraction of the plot
- region.}
-}
-\value{
- Same as \code{legend}
-}
-\note{
- This function is deprecated because \code{\link{legend}} has
- implemented relative positioning (e.g. \code{x="topright"}).
-}
-\author{Gregory R. Warnes \email{gr...@wa...} }
-\seealso{ \code{\link{legend}} }
-\examples{
-
-x <- rnorm(100)
-y <- rnorm(100, x^2 )
-plot(x,y)
-abline( lm(y~x), col="red", lty=1, type="b") # regression fit
-lines( lowess(y~x), col="blue", lty=2, type="b") # lowess fit
-
-smartlegend(x="center", y="top",
- c("Regression","Locally Linear Smooth"),
- col=c("red","blue"), lty=1:2)
-
-}
-\keyword{hplot}
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