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[R-gregmisc-users] SF.net SVN: r-gregmisc:[1916] trunk
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From: <wa...@us...> - 2015-04-06 21:52:15
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Revision: 1916
http://sourceforge.net/p/r-gregmisc/code/1916
Author: warnes
Date: 2015-04-06 21:52:12 +0000 (Mon, 06 Apr 2015)
Log Message:
-----------
Add ChangeLog files to repository
Added Paths:
-----------
trunk/gmodels/inst/ChangeLog
trunk/gplots/inst/ChangeLog
trunk/gtools/inst/ChangeLog
Added: trunk/gmodels/inst/ChangeLog
===================================================================
--- trunk/gmodels/inst/ChangeLog (rev 0)
+++ trunk/gmodels/inst/ChangeLog 2015-04-06 21:52:12 UTC (rev 1916)
@@ -0,0 +1,614 @@
+2014-07-24 warnes
+
+ * [r1868] DESCRIPTION, NAMESPACE, R/ci.R, R/estimable.R, man/ci.Rd,
+ man/estimable.Rd: - Estimable now adds the class 'estimable' to
+ returned objects.
+ - New ci() method for estimable objects.
+ - Minor improvemets to man page formatting.
+
+2013-07-18 warnes
+
+ * [r1710] DESCRIPTION, inst/NEWS: Looks like Brian Ripley
+ repackaged for R 3.0.0 and bumped version number, so change it to
+ 2.15.5
+ * [r1709] DESCRIPTION, inst/NEWS: Update for gmodels 2.15.4
+ * [r1708] man/ci.Rd: Update to current Rd syntax
+ * [r1707] R/estimable.mlm.R, test/test_estimable_mlm.R: Correct bug
+ in estimable.mlm
+
+2013-07-15 warnes
+
+ * [r1706] R/ci.R, man/ci.Rd: Remove unused argument to ci.mer
+
+2012-06-28 warnes
+
+ * [r1577] DESCRIPTION, inst/NEWS: Update for gmodels version
+ 2.15.3.
+ * [r1576] R/percentile.R: Move percentile() function to a separate
+ file.
+ * [r1575] R/est.lmer.R, R/est.mer.R: Update est.mer() to support
+ new S4 "mer" class.
+ * [r1574] man/ci.Rd: Make lme4 example executable.
+
+2012-06-27 warnes
+
+ * [r1573] test/lme-test.R: Add test code submitted by
+ Ari...@or....
+
+2012-04-19 warnes
+
+ * [r1528] inst/NEWS: Update for release 2.15.2
+ * [r1527] DESCRIPTION: Update version and date.
+ * [r1526] man/estimable.Rd: The 'Design' package has been replaced
+ my 'rms', so update man page references.
+ * [r1525] R/ci.R, R/est.mer.R: More fixes for support of S4 'mer'
+ class from lme4 package.
+ * [r1524] man/coefFrame.Rd: Split long line.
+ * [r1523] man/ci.Rd, man/glh.test.Rd: Changes to pass R CMD check
+
+2011-12-14 warnes
+
+ * [r1521] R/ci.R: Improve formatting of ci.mer().
+ * [r1520] R/est.mer.R: Modify est.mer to work with recent lme4
+ 'mer' S4 objects.
+
+2011-01-16 warnes
+
+ * [r1466] DESCRIPTION, inst/NEWS, man/ci.Rd, man/estimable.Rd,
+ man/fast.prcomp.Rd, man/fit.contrast.Rd, man/glh.test.Rd,
+ man/make.contrasts.Rd: Fix warnings reported by R CMD check.
+ Update version number to 2.15.1.
+
+2009-05-09 warnes
+
+ * [r1337] test, test/lme-test.R: Add tests for lme4 'mer' objects
+ * [r1336] inst/NEWS: Update for 2.15.0
+ * [r1335] DESCRIPTION: Update description for 2.15.0
+ * [r1334] R/est.mer.R: Add support for lme4's 'mer' objects
+ * [r1333] NAMESPACE, R/ci.R, R/est.lmer.R, R/estimable.R,
+ R/fit.contrast.R, R/to.est.R: Add support for lme4's 'mer'
+ objects
+ * [r1332] man/glh.test.Rd: Fix .Rd syntax error
+ * [r1331] NEWS: Add softlinks for ChangeLog and NEWS to top level
+ dir for convenience
+ * [r1330] ChangeLog, NEWS, inst, inst/NEWS: Move ChangeLog and NEWS
+ files into inst directory
+ * [r1329] DESCRIPTION, man/ci.Rd, man/estimable.Rd,
+ man/fast.prcomp.Rd, man/fit.contrast.Rd, man/glh.test.Rd,
+ man/make.contrasts.Rd: Update Greg's email address
+
+2008-04-10 warnes
+
+ * [r1255] man/ci.Rd: Improve languages a bit
+
+2008-01-02 warnes
+
+ * [r1236] man/CrossTable.Rd: Update Marc's email address
+
+2007-12-12 warnes
+
+ * [r1233] DESCRIPTION: Move copyright notice for Randall's
+ contributions from License section to Author section of the
+ DESCRIPTION file.
+
+2007-12-07 warnes
+
+ * [r1232] DESCRIPTION, NEWS: Update DESCRIPTION and NEWS for
+ release 2.14.1
+ * [r1231] man/estimable.Rd: Correct minor typos in man page for
+ estimable()
+ * [r1230] R/estimable.R: Add support for lme models to estimable()
+ * [r1229] man/estimable.Rd: Replace non-ascii characters in Soren's
+ name with (equivalent?) ascii character to avoid character
+ encoding issues.
+
+2007-10-22 warnes
+
+ * [r1196] DESCRIPTION: Clarify GPL version
+
+2007-07-26 warnes
+
+ * [r1105] DESCRIPTION, NAMESPACE, NEWS, R/estimable.mlm.R,
+ man/estimable.Rd: Add support for mlm to estimable().
+ * [r1104] R/estimable.R, R/estimable.mlm.R: Add estimable method
+ for mlm objects
+
+2007-03-09 warnes
+
+ * [r1079] R/ci.R: Remove stray character
+ * [r1078] NEWS: Update NEWS file.
+ * [r1077] DESCRIPTION: Update version number
+ * [r1076] R/ci.R: Minor code formatting changes
+ * [r1075] R/est.lmer.R, man/ci.Rd: Flip lower and upper interval in
+ ci.lmer(). Add example to man page.
+ * [r1074] man/ci.Rd, man/estimable.Rd: Fix some old email
+ addressses that got missed
+
+2006-11-29 warnes
+
+ * [r1029] NEWS: Update for 2.13.1
+ * [r1028] NAMESPACE: Correct declartion of S3 methods for
+ estimable()
+ * [r1027] DESCRIPTION: Add additional suggested packages
+ * [r1026] R/estimable.R, man/estimable.Rd: - Add generic
+ - Fix code vs. doc inconsistiencies
+
+2006-11-28 warnes
+
+ * [r1025] R/ci.R, R/estimable.R, R/fast.prcomp.R: Remove extraneous
+ comma that causes errors in R 2.5.0
+
+2006-11-27 warnes
+
+ * [r1016] DESCRIPTION, NEWS: Update for 2.13.1
+ * [r1015] DESCRIPTION, NAMESPACE: Add missing export of methods for
+ estimable()
+
+2006-11-14 ggorjan
+
+ * [r1012] R/ci.R, R/fast.prcomp.R, man/ci.Rd: Removed executable
+ property
+
+2006-08-02 warnes
+
+ * [r977] man/fast.prcomp.Rd, man/fit.contrast.Rd, man/glh.test.Rd,
+ man/make.contrasts.Rd: Update my email address
+
+2006-06-06 nj7w
+
+ * [r966] man/ci.Rd, man/estimable.Rd, man/fit.contrast.Rd: Updated
+ ci, estimable and fit.contrast as per Randall Johnson
+
+2006-06-05 nj7w
+
+ * [r965] DESCRIPTION: Additions as per Randall C Johnson
+ * [r964] R/ci.R, R/estimable.R, R/fit.contrast.R, R/to.est.R:
+ Additions as per Randall C Johnson
+ * [r963] R/est.lmer.R: - New function to estimate CI's and p-values
+ using mcmcsamp() from the
+ Matrix package
+
+2006-05-05 nj7w
+
+ * [r959] R/CrossTable.R, man/CrossTable.Rd: Fixed an error:
+ According to Marc Schwartz - there was an error when a matrix
+ without dimnames(or names(dimnames)) was passed as x argument
+
+2005-12-13 nj7w
+
+ * [r808] ChangeLog: Removed ChangeLog
+ * [r807] NEWS: Updated NEWS
+
+2005-12-12 nj7w
+
+ * [r796] DESCRIPTION: Updated version number for CRAN
+
+2005-12-04 warnes
+
+ * [r781] NEWS: Update for 2.11.0
+ * [r780] DESCRIPTION, NAMESPACE, R/ci.R, R/estimable.R,
+ R/fit.contrast.R, R/to.est.R, man/ci.Rd, man/estimable.Rd:
+ Integration of code changes suggested by Randall C Johnson to add
+ support for lmer (lme version 4) objects to ci(), estimable(),
+ and
+ fit.contrast().
+
+ Addition of simplified coefficient specificaiton for estimable()
+ based on a function provided by Randall C Johnson. It is now
+ possible to do things like:
+ estimable(reg, c("xB"=1,"xD"=-1) )
+ instead of:
+ estimable(reg, c( 0, 1, 0, -1) )
+ which should make estimable much easier to use for large models.
+
+2005-12-01 nj7w
+
+ * [r776] man/ci.Rd, man/coefFrame.Rd, man/estimable.Rd,
+ man/fit.contrast.Rd, man/make.contrasts.Rd: Updated Greg's email
+ address
+
+2005-10-27 warnes
+
+ * [r709] DESCRIPTION: Update version number. Bump minor version
+ since we added functionality.
+ * [r708] DESCRIPTION, NAMESPACE: Add ci.binom() to NAMESPACE, bump
+ version
+
+2005-10-26 warnes
+
+ * [r707] R/ci.R, man/ci.Rd: Add ci.binom
+
+2005-10-25 warnes
+
+ * [r706] NAMESPACE: Add gdata::nobs to import list. Needed by ci()
+
+2005-09-12 nj7w
+
+ * [r671] man/fast.prcomp.Rd, man/glh.test.Rd: Updated Greg's email
+
+2005-09-07 nj7w
+
+ * [r667] man/CrossTable.Rd: Fixed man page
+
+2005-09-06 nj7w
+
+ * [r664] DESCRIPTION: Updated DESCRIPTION
+ * [r663] NEWS: Added NEWS
+ * [r662] DESCRIPTION: Fixed the Package name
+
+2005-09-02 nj7w
+
+ * [r655] ChangeLog: Added ChangeLog
+
+2005-08-31 nj7w
+
+ * [r644] DESCRIPTION: Added DESCRIPTION file
+ * [r643] DESCRIPTION.in: removed DESCRIPTION.in
+
+2005-07-11 nj7w
+
+ * [r627] R/CrossTable.R, man/CrossTable.Rd: Revision based on Marc
+ Schwartz's suggestions:
+ 1) Added 'dnn' argument to enable specification of dimnames as
+ per table()
+ 2) Corrected bug in SPSS output for 1d table, where proportions
+ were being printed and not percentages ('%' output)
+
+2005-06-09 nj7w
+
+ * [r625] R/ci.R, R/coefFrame.R, R/estimable.R, R/fast.prcomp.R,
+ R/fit.contrast.R, R/glh.test.R, R/make.contrasts.R,
+ man/CrossTable.Rd, man/ci.Rd, man/coefFrame.Rd, man/estimable.Rd,
+ man/fast.prcomp.Rd, man/fit.contrast.Rd, man/glh.test.Rd,
+ man/make.contrasts.Rd: Updating the version number, and various
+ help files to synchronize splitting of gregmisc bundle in 4
+ individual components.
+ * [r623] R/CrossTable.R: Updates by Marc Schwartz:
+ CrossTable:
+
+ # Revision 2.0 2005/04/27
+ # Added 'format = "d"' to all table count output
+ # so that large integers do not print in
+ # scientific notation
+
+2005-05-13 nj7w
+
+ * [r621] man/CrossTable.Rd: 1) Using dQuote.ascii function in
+ read.xls as the new version of dQuote doesn't work proprly with
+ UTF-8 locale.
+ 2) Modified CrossTable.Rd usage in gmodels
+ 3) Modified heatmap.2 usage in gplots.
+
+2005-05-11 warnes
+
+ * [r620] DESCRIPTION.in, NAMESPACE: Add dependency on
+ gdata::frameApply.
+
+2005-03-31 warnes
+
+ * [r593] NAMESPACE: Add ceofFrame function to NAMESPACE
+ * [r592] man/coefFrame.Rd: coefFrame example needs to properly load
+ ELISA data from gtools package
+ * [r588] R/CrossTable.R, man/CrossTable.Rd, man/ci.Rd,
+ man/estimable.Rd, man/fast.prcomp.Rd, man/fit.contrast.Rd,
+ man/glh.test.Rd, man/make.contrasts.Rd: Ensure that each file has
+ $Id$ header, and no $Log$
+ * [r587] R/coefFrame.R, man/coefFrame.Rd: Add coefFrame() function
+ contributed by Jim Rogers
+
+2005-01-18 warnes
+
+ * [r521] R/CrossTable.R: Removed Windows Line Endings
+
+2005-01-14 nj7w
+
+ * [r518] man/CrossTable.Rd: Updated the manual to reflect
+ prop.chisq change in its R file.
+
+2005-01-14 warnes
+
+ * [r517] R/CrossTable.R: Nitin added display of the Chisquare
+ contribution of each cell, as suggested
+ by Greg Snow.
+
+2005-01-12 warnes
+
+ * [r515] DESCRIPTION.in: Add dependency on R 1.9.0+ to prevent
+ poeple from installing on old
+ versions of R which don't support namespaces.
+
+2004-12-23 nj7w
+
+ * [r507] R/CrossTable.R, man/CrossTable.Rd: Split the function
+ print.CrossTable.vector in two parts - for SAS behaiour and SPSS
+ behaviour. Also put the code of printing statistics in a function
+ 'print.statistics'
+
+2004-12-21 warnes
+
+ * [r502] R/CrossTable.R: Added & extended changes made by Nitin to
+ implement 'SPSS' format, as suggested by
+ Dirk Enzmann <dir...@ju...>.
+
+2004-09-30 warneg
+
+ * [r464] man/glh.test.Rd: Fix typos.
+
+2004-09-27 warneg
+
+ * [r461] DESCRIPTION, DESCRIPTION.in: Updated to pass R CMD check.
+
+2004-09-03 warneg
+
+ * [r450] man/fit.contrast.Rd: Add explicit package to call to
+ quantcut in example.
+ * [r446] DESCRIPTION, NAMESPACE, R/CrossTable.R, R/ci.R,
+ R/estimable.R, R/fast.prcomp.R, R/fit.contrast.R, R/glh.test.R,
+ R/make.contrasts.R, man/estimable.Rd, man/fit.contrast.Rd,
+ man/glh.test.Rd, man/make.contrasts.Rd: initial bundle checkin
+
+2004-09-02 warneg
+
+ * [r442] DESCRIPTION, DESCRIPTION.in, NAMESPACE: Initial revision
+
+2004-05-25 warnes
+
+ * [r327] R/CrossTable.R, man/CrossTable.Rd: Updates from Mark
+ Schwartz.
+
+2004-04-13 warnes
+
+ * [r314] man/estimable.Rd: Fix latex warning: it doesn't like
+ double subscripts.
+
+2004-03-26 warnes
+
+ * [r306] man/fast.prcomp.Rd: Reflect movement of code from 'mva'
+ package to 'stats' in R 1.9.0.
+
+2004-03-25 warnes
+
+ * [r296] R/estimable.R, man/estimable.Rd: - Estimable was reporting
+ sqrt(X^2) rather than X^2 in the output.
+ - Provide latex math markup for linear algebra expressions in
+ help text.
+ - Other clarifications in help text
+ * [r295] R/estimable.R, man/estimable.Rd: Add enhancements to
+ estimable() provided by S�ren H�jsgaard
+ \email{so...@ag...}:
+
+ I have made a modified version of the function [..] which
+ 1) also works on geese and gee objects and
+ 2) can test hypotheses af the forb L * beta = beta0 both as a
+ single Wald test and row-wise for each row in L.
+
+2003-11-17 warnes
+
+ * [r221] R/fit.contrast.R: - Fix incorrect handling of glm objects
+ by fit.contrast, as reported
+ by Ulrich Halekoh, Phd <ulr...@ag...>.
+
+ - Add regression test code to for this bug.
+
+2003-08-07 warnes
+
+ * [r217] R/ci.R: - Fixed incorrect denominator in standard error
+ for mean in ci.default.
+
+2003-04-22 warnes
+
+ * [r190] R/fit.contrast.R: - the variable 'df' was used within the
+ lme code section overwriting
+ the argument 'df'.
+
+2003-03-12 warnes
+
+ * [r173] man/fit.contrast.Rd: - Fixed a typo in the example
+ - Added to lme example
+
+2003-03-07 warnes
+
+ * [r168] R/fast.prcomp.R: - Minor changes to code to allow the
+ package to be provided as an
+ S-Plus chapter.
+
+2003-01-30 warnes
+
+ * [r160] R/fit.contrast.R, man/fit.contrast.Rd: - Renamed
+ 'contrast.lm' to 'fit.contrast'. This new name is more
+ descriptive and makes it easier to create and use methods for
+ other
+ classes, eg lme.
+
+ - Enabled fit.contrast for lme object now that Doug Bates has
+ provided
+ the necessary support for contrasts in the nlme package.
+
+ - New contrast.lm function which generates a 'depreciated'
+ warning and
+ calls fit.contrast
+
+ - Updated help text to match changes.
+ * [r158] R/CrossTable.R, man/CrossTable.Rd: - Removed argument
+ 'correct' and now print separate corrected values
+ for 2 x 2 tables.
+ - Added arguments 'prop.r', 'prop.c' and 'prop.t' to toggle
+ printing
+ of row, col and table percentages. Default is TRUE.
+ - Added argument 'fisher' to toggle fisher exact test. Default is
+ FALSE.
+ - Added McNemar test to statistics and argument 'mcnemar' to
+ toggle
+ test. Default is FALSE.
+ - Added code to generate an invisible return list containing
+ table
+ counts, proportions and the results of the appropriate
+ statistical tests.
+ * [r157] R/make.contrasts.R: - Added explicit check to ensure that
+ the number of specified
+ contrasts is less than or equal to the ncol - 1. Previously, this
+ failed with an obtuse error message when the contrast matrix had
+ row
+ names, and silently dropped contrasts over ncol-1.
+
+2002-11-04 warnes
+
+ * [r142] R/CrossTable.R: - Moved fisher.test() to after table is
+ printed, so that table is
+ still printed in the event that fisher.test() results in errors.
+
+2002-10-29 warnes
+
+ * [r138] R/fast.prcomp.R, man/fast.prcomp.Rd: - Fixes to fast.svd
+ to make it actually work.
+ - Updates to man page to fix mistmatches between code and docs
+ and to
+ fix warnings.
+ * [r137] R/make.contrasts.R, man/make.contrasts.Rd: - Moved
+ make.contrasts to a separate file.
+ - Enhanced make contrasts to better label contrast matrix, to
+ give
+ how.many a default value, and to coerce vectors into row
+ matrixes.
+ - Added help page for make.contrasts.
+ - Added link from contrasts.lm seealso to make.contrasts.
+ * [r136] R/fast.prcomp.R, man/fast.prcomp.Rd: Initial checkin for
+ fast.prcomp() and fast.svd().
+
+2002-09-26 warnes
+
+ * [r127] man/glh.test.Rd: - Added note and example code to
+ illustrate how to properly compute
+ contrasts for the first factor in the model.
+
+2002-09-24 warnes
+
+ * [r124] R/glh.test.R: - Fixed a typo.
+
+2002-09-23 warnes
+
+ * [r119] man/CrossTable.Rd, man/glh.test.Rd: - Fixed syntax errors
+ in barplot2.Rd and CrossTable.Rd
+ - Fixed incorrect translation of 'F' (distribution) to 'FALSE' in
+ glh.test.Rd
+ * [r117] R/ci.R, man/estimable.Rd, man/glh.test.Rd: - Modified all
+ files to include CVS Id and Log tags.
+ * [r116] R/CrossTable.R, man/CrossTable.Rd: - Added CrossTable()
+ and barplot2() code and docs contributed by Marc Schwartz.
+ - Permit combinations() to be used when r>n provided
+ repeat.allowed=TRUE
+ - Bumped up version number
+
+2002-08-01 warnes
+
+ * [r114] R/ci.R, man/ci.Rd, man/estimable.Rd, man/glh.test.Rd: -
+ Corrected documentation mismatch for ci, ci.default.
+
+ - Replaced all occurences of '_' for assignment with '<-'.
+
+ - Replaced all occurences of 'T' or 'F' for 'TRUE' and 'FALSE'
+ with
+ the spelled out version.
+
+ - Updaded version number and date.
+
+2002-04-09 warneg
+
+ * [r109] R/ci.R, R/estimable.R, R/glh.test.R, man/glh.test.Rd:
+ Checkin for version 0.5.3
+
+2002-03-26 warneg
+
+ * [r104] R/ci.R, R/glh.test.R, man/ci.Rd, man/glh.test.Rd: -
+ Changed methods to include '...' to match the generic.
+ - Updated for version 0.5.1
+ * [r99] man/glh.test.Rd: Removed incorrect link to 'contrast' from
+ seealso.
+
+2002-02-20 warneg
+
+ * [r81] man/ci.Rd, man/estimable.Rd, man/glh.test.Rd: Minor
+ changes, typo and formatting fixes.
+
+2002-01-17 warneg
+
+ * [r70] man/estimable.Rd: - Fixed errror in last example by adding
+ 'conf.int' parameter to
+ 'estimable' call.
+ * [r69] R/glh.test.R: - Fixed typo in code that resulted in an
+ syntax error.
+
+2002-01-10 warneg
+
+ * [r68] R/glh.test.R: - print.glh.test() was using cat() to
+ printing the call. This didn't work and
+ generated an error.
+
+2001-12-19 warneg
+
+ * [r66] man/glh.test.Rd: - Fixed display of formulae.
+ - Added description of return value
+ * [r65] R/glh.test.R: - Removed extra element of return object.
+
+2001-12-18 warneg
+
+ * [r64] man/estimable.Rd: - Updated documentation to reflect change
+ of parameters from 'alpha'
+ to 'conf.int', including the new optional status of the
+ confidence
+ intervals.
+ * [r63] R/estimable.R: - Modified to make confidence intervals
+ optional. Changed 'alpha'
+ parameter giving significance level to 'conf.int' giving
+ confidence
+ level.
+ * [r62] man/glh.test.Rd: - Added summary.glh.test to alias, usage,
+ and example sections.
+ * [r61] R/glh.test.R: - Modified to work correctly when obj is of
+ class 'aov' by specifying
+ summary.lm instead of summary. This ensures that the summary
+ object
+ has the fields we need.
+
+ - Moved detailed reporting of results from 'print' to 'summary'
+ function and added a simpler report to 'print'
+ * [r60] R/estimable.R: - Modified to work correctly when obj is of
+ class 'aov' by specifying
+ summary.lm instead of summary. This ensures that the summary
+ object
+ has the fields we need.
+ * [r59] R/glh.test.R, man/glh.test.Rd: Initial checkin.
+
+2001-12-17 warneg
+
+ * [r56] man/estimable.Rd: - Fixed spelling errors.
+ * [r55] man/estimable.Rd: - Fixed the link to contrasts.lm.
+ - Rephrased title/description to be more clear.
+
+2001-12-10 warneg
+
+ * [r49] man/estimable.Rd: Renamed 'contrsts.coeff.Rd' to
+ 'estimable.Rd' corresponding to function rename.
+ * [r48] R/estimable.R: renamed from contrast.coeff.R to estimable.R
+ (incorrectly via contrast.lm.R)
+
+2001-12-07 warneg
+
+ * [r37] man/ci.Rd: - Added text noting that lme is now supported.
+ * [r36] R/ci.R: - Fixed typo: DF column was being filled in with
+ p-value.
+ * [r35] R/ci.R: - Added ci.lme method to handle lme objects.
+
+2001-10-16 warneg
+
+ * [r27] man/ci.Rd: Fixed unbalanced brace.
+
+2001-08-25 warneg
+
+ * [r12] man/ci.Rd: - Added CVS header.
+ - Added my email address.
+
+2001-05-30 warneg
+
+ * [r2] ., R, R/ci.R, man, man/ci.Rd: Initial revision
+
Added: trunk/gplots/inst/ChangeLog
===================================================================
--- trunk/gplots/inst/ChangeLog (rev 0)
+++ trunk/gplots/inst/ChangeLog 2015-04-06 21:52:12 UTC (rev 1916)
@@ -0,0 +1,1561 @@
+2014-12-02 warnes
+
+ * [r1907] inst/NEWS: Add descrioption of node stack overflow issue
+ and work-around.
+ * [r1906] R/bandplot.R: Move '...' argument to bandplot.formula to
+ match man page.
+ * [r1905] tests/test_plottingDeepDendrogram.R: plot.dendrogram
+ isn't exported by gplots, so it must be referenced using the
+ ':::' notation.
+ * [r1904] man/bandplot.Rd: Man page fixes.
+ * [r1903] NAMESPACE: Add exports of new bandplot methods to
+ NAMESPACE file.
+ * [r1902] R/bandplot.R: Code cleanup.
+ * [r1901] R/bandplot.R: Simplify model.frame code for
+ bandplot.formula.
+
+2014-12-01 warnes
+
+ * [r1900] inst/NEWS: Update for 2.15.0
+ * [r1899] DESCRIPTION, R/bandplot.R, man/bandplot.Rd: Convert
+ bandplot to S3-method dispatch and add method for class formula.
+ * [r1898] NAMESPACE: Improve whitespace
+
+2014-09-17 warnes
+
+ * [r1895] NAMESPACE: Minor reformatting.
+ * [r1894] R/plotNode.R: Explicitly reset namespace for dendrogram
+ functions copied from stats.
+ * [r1893] DESCRIPTION, inst/NEWS: Update DESCRIPTION and NEWS for
+ gplots 2.14.2
+ * [r1892] R/heatmap.2.R, R/plotNode.R: To work around recursion
+ limit issues triggered by deeply nested
+ dendrograms, (1) create a local *intepreted* copy of
+ stats:::plotNode(), (2) detect recursion limit error message
+ within
+ heatmap.2() and generate a more user-friendly message.
+ * [r1891] tests/dat.csv, tests/test_plottingDeepDendrogram.R: Add
+ test case for exceeding recursion limits when plotting deeply
+ nested dendrograms
+ * [r1890] R/heatmap.2.R: heatmap.2 was not properly handling
+ integer vectors for Rowv and Colv.
+ * [r1889] R/heatmap.2.R: key.title=NA was not being honored when
+ density.info=NA.
+
+2014-09-16 warnes
+
+ * [r1888] R/plotNode.R: Add plotNode code to allow modificaiton of
+ algorithm from recursive to iterative for the purpose of avoiding
+ node stack overflow.
+ * [r1887] R/heatmap.2.R, man/heatmap.2.Rd: - Correct statement of
+ default color for 'notecol' argumemt to 'heatmap.2'.
+ - Modify default arguments to 'symbreaks' and 'symkey' to make
+ the
+ logic more evident by replacing min() with any(). (The previous
+ code executed properly, but relied on implicit coercion of
+ logicals
+ to numeric, obscuring the intent.)
+
+2014-06-30 warnes
+
+ * [r1823] R/heatmap.2.R: Fix typo in dendrogram size checking code.
+
+2014-06-19 warnes
+
+ * [r1822] R/heatmap.2.R: Fix typo 'ColInd' --> 'colInd'.
+ * [r1821] DESCRIPTION, inst/NEWS: Update for gplots 2.14.0
+
+2014-06-17 warnes
+
+ * [r1820] man/heatmap.2.Rd: - Document new 'key.title', 'key.xlab',
+ 'key.ylab', 'key.xtickfun',
+ 'key.ytickfun', 'key.par' arguments to heatmap.2 (belated
+ commit).
+ - Document new 'reorderfun' argument to heatmap.2.
+ * [r1819] R/heatmap.2.R: Allow user to specify function used to
+ reorder based on the dendogram
+ via a new 'reorderfun' argument. Suggested by Yuanhua Liu.
+ * [r1818] R/heatmap.2.R: Fix typo in heatmap.2() reported by
+ Yuanhua Liu.
+
+2014-06-05 warnes
+
+ * [r1817] R/heatmap.2.R: Check size of Rowv and Colv dendogram
+ objects to ensure they matches data.
+
+2014-04-17 warnes
+
+ * [r1812] man/hist2d.Rd: Add see also to r2d2::freq2d.
+ * [r1811] man/ci2d.Rd: Add reference to r2d2::conf2d.
+
+2014-04-09 warnes
+
+ * [r1802] R/heatmap.2.R: Add padj=0.5 to better align margin
+ labels.
+
+2014-04-05 warnes
+
+ * [r1781] inst/NEWS: Update NEWS
+ * [r1780] R/heatmap.2.R, man/heatmap.2.Rd: Add 'extrafun' argument
+ to heatmap.2 to allow the user to perform
+ additional customization by providing a function to be called
+ before
+ heatmap.2 exits.
+
+2014-04-04 warnes
+
+ * [r1779] DESCRIPTION, inst/NEWS: Update for gplots 2.13.0
+ * [r1778] R/heatmap.2.R: Fix handling of row trace (hline). Bug
+ report and patch provided by Ilia Kats.
+
+2013-10-21 warnes
+
+ * [r1744] man/gplots-deprecated.Rd: Handle 'ask' argument in
+ lmplot2 function proper, rather than in (depreciated) plot.lm2
+ wrapper.
+ * [r1743] inst/NEWS: Correct release number
+ * [r1742] R/lmplot2.R: Handle 'ask' argument in lmplot2 function
+ proper, rather than in (depreciated) plot.lm2 wrapper.
+ * [r1741] man/lmplot2.Rd: Fix typo
+
+2013-10-15 warnes
+
+ * [r1740] NAMESPACE: Add boxplot2 and lmplot2 to NAMESPACE
+ * [r1739] DESCRIPTION, inst/NEWS: Update for gplots release 2.12.1
+ * [r1738] R/boxplot.n.R, R/boxplot2.R, R/lmplot2.R, R/plot.lm.R,
+ man/boxplot.n.Rd, man/boxplot2.Rd, man/gplots-deprecated.Rd,
+ man/lmplot2.Rd, man/plot.lm2.Rd: Rename boxplot.n to boxplt2 and
+ plot.lm2 to lmplot2
+ * [r1737] man/lmplot2.Rd: Make lmplot2 manual page from plot.lm.2
+ manual page.
+ * [r1736] man/boxplot2.Rd: Make boxplot2 manual page from boxplot.n
+ manual page.
+ * [r1735] man/gplots-deprecated.Rd: Create deprecated man page from
+ boxplot.n man page
+
+2013-10-12 warnes
+
+ * [r1734] inst/NEWS: Update NEWS with latest changes
+ * [r1733] man/ci2d.Rd: Mark one example dontrun to avoid --as-cran
+ warning.
+
+2013-10-11 warnes
+
+ * [r1732] R/overplot.R: Allow standard S3 method handling to locate
+ the correct function.
+ * [r1731] R/overplot.R: Fix error when a subgroup contains no
+ finite values
+ * [r1730] tests/heatmap2Test.Rout.save: Update test output
+ * [r1729] DESCRIPTION: Move several packages from Depends to
+ Imports, Suggests
+ * [r1728] man/ci2d.Rd: Use gdata::nobs in example
+ * [r1727] NAMESPACE: caTools and KernSmooth now have namespaces, so
+ import from them.
+ * [r1726] inst/NEWS: Update files for gplots 2.12.0
+ * [r1725] DESCRIPTION, inst/NEWS: Update files for gplots 2.12.0
+ * [r1724] R/heatmap.2.R, man/heatmap.2.Rd: Add parameters to
+ control row and column label positioning, rotation,
+ justification, and offset.
+ * [r1723] R/venn.R: Fix bug in getVennCounts.data.frame when number
+ of TRUE cases in each variable are equal.
+
+2013-06-28 warnes
+
+ * [r1680] inst/doc/BalloonPlot.pdf: Update PDF file, including new
+ email addresses
+
+2013-06-27 warnes
+
+ * [r1679] inst/NEWS: Update for gplots 2.11.3
+ * [r1678] DESCRIPTION: Update for release 2.11.3
+ * [r1677] tests/heatmap2Test.Rout.save: Update with tests for only
+ 1 row/column separator
+ * [r1676] man/plotmeans.Rd: Fix typo
+ * [r1675] tests/heatmap2Test.R: Add test for one row/column
+ separator
+ * [r1674] R/baseOf.R: Add more in-line comments
+ * [r1673] R/sinkplot.R, man/sinkplot.Rd: Modify sinkplot to use a
+ local environement to store its information instead of the global
+ environment.
+
+2013-03-24 warnes
+
+ * [r1647] inst/NEWS: Update news for release 2.11.2
+ * [r1646] R/barplot2.R, man/barplot2.Rd: Add ci.width argument to
+ barplot2() to allow varying the length of the 't' at the end of
+ confidence interval bars.
+ * [r1642] DESCRIPTION: Update for release 2.11.2
+ * [r1641] man/lowess.Rd: Update manual page for lowess.default() to
+ match changed argument list for lowess() in R 3.0.0
+
+2012-12-14 warnes
+
+ * [r1631] R/plot.venn.R: Fix typo: warn() instead of warning().
+ * [r1630] vignettes/venn.Rnw: Fix syntax of VignetteIndexEntry in
+ venn.Rnw.
+ * [r1629] vignettes/venn.Rnw, vignettes/venn.pdf: Add generated
+ vignette pdf.
+ * [r1628] vignettes/venn.Rnw: Add required VignetteIndexEntry
+ metadata to venn vignette code.
+ * [r1627] DESCRIPTION, inst/NEWS: Update DESCRIPTION and NEWS for
+ release 2.11.1.
+ * [r1626] R/baseOf.R, R/plot.venn.R, R/venn.R, vignettes,
+ vignettes/venn.Rnw: Improve venn() to work with PDF and
+ Sweave/pdflatex. Provide a vignette for venn().
+ * [r1625] R/heatmap.2.R: Fix error in processing the colsep
+ argument to heatmap.2.
+ * [r1624] man/plotmeans.Rd: Clarify that plotmeans is intended for
+ a *continuous* outcome based on
+ a *factor* grouping level.
+ * [r1623] inst/doc/BalloonPlot.pdf: Replace corrupted
+ BalloonPlot.pdf file and remove svn properties that were causing
+ it to be corrupted.
+
+2012-06-08 warnes
+
+ * [r1558] inst/NEWS: Update NEWS for 2.11.0 release.
+ * [r1557] DESCRIPTION, R/barplot2.R, R/ooplot.R, R/plotCI.R,
+ R/sinkplot.R, man/qqnorm.aov.Rd, tests/heatmap2Test.Rout.save:
+ Fix R CMD check warnings.
+ * [r1556] man/hist2d.Rd: Move incorrectly placed closing brace.
+
+2012-06-07 warnes
+
+ * [r1555] R/ci2d.R, R/hist2d.R, R/print.hist2d.R, man/hist2d.Rd:
+ Object returned by hist2d() has been changed:
+ - $x and $y now contain the n midpoints of the bins in each
+ direction
+ - $x.breaks, $y.breaks now contain the n+1 limits of the bins in
+ each direction
+ The function print.hist2d() has been updated appropriately.
+ * [r1554] R/hist2d.R: Correct error in handling binning:
+ (N+1)x(N+1) bins were being created
+ instead of NxN bins, and the highest row/column in each direction
+ was
+ being omitted from the results and plot.
+ * [r1553] R/plotmeans.R, man/plotmeans.Rd: Add default value for
+ lwd argument to plotmeans()
+
+2012-05-31 warnes
+
+ * [r1533] man/qqnorm.aov.Rd: Properly mark up S3 method.
+
+2011-12-09 warnes
+
+ * [r1519] R/plotmeans.R, man/plotmeans.Rd: Add 'lwd' (linewidth) to
+ arguments handled by plotmeans.
+
+2011-09-02 warnes
+
+ * [r1505] inst/NEWS: Update NEWS for release 2.10.1.
+ * [r1504] DESCRIPTION: Increment version counter.
+ * [r1503] man/ci2d.Rd, man/hist2d.Rd: Add necessary alias statment
+ to man files for for 'hist2d' and 'ci2d'
+ print methods.
+ * [r1502] R/print.hist2d, R/print.hist2d.R: Fix naming error
+ * [r1501] NAMESPACE, R/ci2d.R, R/hist2d.R, R/print.ci2d.R,
+ R/print.hist2d, man/ci2d.Rd, man/hist2d.Rd: Provide print()
+ methods for 'hist2d' and 'ci2d' objects.
+ * [r1498] DESCRIPTION: Correct dependence on R >= 2.10
+
+2011-09-01 warnes
+
+ * [r1491] NAMESPACE, man/ci2d.Rd: - Correct issues in ci2d() man
+ page.
+ * [r1490] DESCRIPTION, NAMESPACE, tests/heatmap2Test.Rout.save: -
+ Comment out import from KernSmooth in NAMESPACES, since
+ KernSmooth
+ doesn't provide a namespace.
+ - Update a test output.
+ * [r1489] DESCRIPTION, inst/NEWS: - Update NEWS file and correct
+ version number
+ * [r1488] DESCRIPTION: - Depend on KernSmooth package. Increment
+ version number.
+ * [r1487] NAMESPACE: - Depend on KernSmooth package and import
+ 'bkdeD2' and 'dpik'.
+ * [r1486] R/ci2d.R, man/ci2d.Rd: Improvements to ci2d():
+
+ - Add option to utilize KernDensity::bkde2D to estimate the 2-d
+ density (now the default).
+
+ - Add option to display points for original data on generated
+ plots
+
+ - Name elements of returned contour list according to the
+ significance
+ level to make it easier to select desired contours.
+
+ - Improve handling of x and y labels
+ * [r1485] man/hist2d.Rd: Remove log tag and comments from top of
+ the file.
+
+2011-08-26 warnes
+
+ * [r1478] inst/NEWS: Update NEWS for 2.10.0 release
+ * [r1477] DESCRIPTION: Add dependency on R>= 2.10 to handle
+ compressed Rda data file.
+ * [r1476] data/rtPCR.rda: Compress rtPCR example data set to make
+ distributed package smaller.
+ * [r1475] R/ci2d.R: Remove '1.0' confidence line from
+ ci2d(..,show="contour").
+
+2011-08-25 warnes
+
+ * [r1474] DESCRIPTION, NAMESPACE, R/ci2d.R, man/ci2d.Rd,
+ man/rich.colors.Rd: - Add 'ci2d()' to compute 2-dimensional
+ emipirical confidence interval.
+ - Fix parse error in help page for 'rich.colors()'.
+
+2011-08-16 warnes
+
+ * [r1473] DESCRIPTION: Update DESCRIPTION file for 2.8.1.
+ * [r1472] R/rich.colors.R, man/rich.colors.Rd: Add 'alpha' argument
+ to rich.colors() to control transparency.
+ * [r1471] R/hist2d.R, man/hist2d.Rd: Accellerate hist2d by
+ replacing for() loop with tapply(), and allow user to specify
+ summary function applied, per suggestion by Peter Hagedorn (PHA
+ -at- santaris -dot- com).
+
+2011-05-02 arnima
+
+ * [r1470] R/rich.colors.R, man/rich.colors.Rd: Added argument
+ 'alpha' and removed argument 'rgb' in rich.colors()
+
+2010-12-13 warnes
+
+ * [r1463] R/heatmap.2.R: Correct error that arises when data
+ includes NA values, identified by Melissa Key
+
+2010-06-11 warnes
+
+ * [r1446] man/venn.Rd: Fix errors detected by R CMD check
+ * [r1445] man/venn.Rd: Fix errors detected by R CMD check
+ * [r1444] man/venn.Rd: Use 'TRUE' instead of 'T' for true in venn
+ man page
+ * [r1443] DESCRIPTION, NAMESPACE, inst/NEWS: Update for gplots
+ 2.8.0
+ * [r1442] R/baseOf.R: Moved baseOf() into a separate file
+ * [r1441] man/balloonplot.Rd, man/bandplot.Rd, man/boxplot.n.Rd,
+ man/colorpanel.Rd, man/hist2d.Rd, man/ooplot.Rd, man/overplot.Rd,
+ man/plot.lm2.Rd, man/plotCI.Rd, man/plotmeans.Rd,
+ man/residplot.Rd, man/sinkplot.Rd, man/smartlegend.Rd,
+ man/space.Rd, man/textplot.Rd, man/wapply.Rd: Update Greg's email
+ address
+ * [r1440] R/plot.venn.R, R/venn.R, man/venn.Rd: - venn() now
+ returns an object of class venn() and a plot method for
+ this class is provided.
+
+ - Manual page for venn has been improved, based on contributions
+ by
+ Steffen Moeller
+
+2010-02-17 warnes
+
+ * [r1420] DESCRIPTION, R/hist2d.R, inst/NEWS: Improve performance
+ of hist2d thanks to suggestion by Joerg van den Hoff.
+
+2010-01-22 arnima
+
+ * [r1372] R/rich.color.R, R/rich.colors.R, man/rich.color.Rd,
+ man/rich.colors.Rd: Renamed files rich.color.* to rich.colors.*
+ and renamed rich.colors args
+
+2009-11-16 arnima
+
+ * [r1367] R/rich.color.R: Minor reformatting only.
+
+2009-11-12 warnes
+
+ * [r1365] DESCRIPTION, R/plotmeans.R, inst/NEWS,
+ tests/plotmeans_nobars.R: Correct bug reported by Alan Yong:
+ plotmeans() crashed when 'bars=FALSE'.
+
+2009-10-22 warnes
+
+ * [r1364] R/heatmap.2.R: Fixed typo in bug fix.
+ * [r1363] DESCRIPTION, inst/NEWS: Update NEWS and DESCRIPTION for
+ gplots 2.7.3
+ * [r1362] R/heatmap.2.R: Fix transposed display of data (but not
+ labels) in heatmap.2 when symm=TRUE
+
+2009-10-12 warnes
+
+ * [r1361] DESCRIPTION, inst/NEWS: Update version number to 2.7.2,
+ 2.7.1 was already up but apparently DESCRIPTION wasn't commited
+ with change.
+
+2009-10-10 warnes
+
+ * [r1360] R/col2hex.R, man/colorpanel.Rd, man/lowess.Rd,
+ man/ooplot.Rd, man/overplot.Rd, man/smartlegend.Rd, man/space.Rd,
+ tests/heatmap2Test.Rout.save: Various minor changes to remove new
+ R CMD CHECK warnings.
+ * [r1359] DESCRIPTION, inst/NEWS: Update DESCRIPTION and NEWS file
+ for 2.7.1
+ * [r1358] R/col2hex.R: Fix bug reported by Ken Lo: col2hex had blue
+ and green components swapped.
+
+2009-05-08 warnes
+
+ * [r1324] tests/heatmap_to_heatmap.2_test.R: Add test of using a
+ dendrogram created by heatmap() with heatmap.2()
+ * [r1323] R/heatmap.2.R: heatmap.2: handle NA for RowV or ColV the
+ same way as NULL
+ * [r1322] man/plotCI.Rd: Fix typo
+ * [r1321] inst/NEWS: Update NEWS for release 2.7.0
+ * [r1320] inst/ChangeLog: We don't want the Changelog in svn, since
+ it is autogenerated from svn logs!
+ * [r1319] man/balloonplot.Rd, man/bandplot.Rd, man/boxplot.n.Rd,
+ man/colorpanel.Rd, man/hist2d.Rd, man/ooplot.Rd, man/overplot.Rd,
+ man/plot.lm2.Rd, man/plotCI.Rd, man/plotmeans.Rd,
+ man/residplot.Rd, man/sinkplot.Rd, man/smartlegend.Rd,
+ man/space.Rd, man/textplot.Rd, man/wapply.Rd: Update Greg's email
+ address to 'gr...@ra...'
+ * [r1318] R/plotCI.R, man/plotCI.Rd: plotCI now properly handles
+ 'NULL' and 'NA' values for ui, li, uiw, and liw.
+ * [r1317] R/heatmap.2.R, man/heatmap.2.Rd,
+ tests/heatmap2Test.Rout.save: heatmap.2: Add option to create
+ breakpoints symmetric around 0, provide additional information in
+ the return value
+ * [r1316] man/space.Rd: Fix Rd syntax error
+
+2009-04-22 warnes
+
+ * [r1315] man/barplot2.Rd, man/ooplot.Rd: VADeaths data set has
+ move to dataset package
+
+2008-08-14 warnes
+
+ * [r1302] R/balloonplot.R: balloonpot() was incorrectly displaying
+ warning about z values below 0 when scale.method="relative".
+ Fixed.
+
+2008-08-07 warnes
+
+ * [r1301] DESCRIPTION, NAMESPACE, inst/ChangeLog, inst/NEWS: Update
+ DESCRIPTION NAMESPACE and NEWS for 2.7.0 release
+
+2008-06-16 warnes
+
+ * [r1296] TODO, inst/TODO: Add TODO list to gplots
+
+2008-05-20 warnes
+
+ * [r1274] DESCRIPTION, man/plot.lm2.Rd: Update man page to match
+ recent changes to plot.lm2()
+ * [r1273] man/venn.Rd: More work on documentation for venn()
+ * [r1272] R/bandplot.R, man/bandplot.Rd: Fix code/doc mismatch due
+ to recent changes to bandplot()
+ * [r1271] DESCRIPTION, NAMESPACE, R/venn.R, man/venn.Rd: Add Venn
+ Diagram plot submitted by Steffen Moeller
+
+2008-05-07 warnes
+
+ * [r1264] DESCRIPTION, R/bandplot.R: Improve performance of
+ bandplot by calculating running standard deviation using
+ caTools::runsd() instead of (ver slow) window() call. In addtion,
+ the standard deviations are now only calculated once, rather than
+ once for each band.
+ * [r1263] R/plot.lm.R: Improve performance of plot.lm for large lm
+ objects by using fitted() instead of predict() to get y-hat
+
+2008-05-05 warnes
+
+ * [r1262] DESCRIPTION, R/bandplot.R: Use caTools's runsd in
+ bandplot for a dramatic speedup for large data
+ * [r1261] NAMESPACE: Add import of gtools::reorder.factor for
+ ballonplot man page
+ * [r1260] R/balloonplot.R, man/balloonplot.Rd: balloonplot: Add
+ option to scale balloons so [min,max]->[0,1] (relative) or so
+ [0,max] <- [0,1] (absolute)
+
+2008-04-07 warnes
+
+ * [r1254] man/barplot2.Rd: Fix typo in barplot2() man page
+ * [r1253] DESCRIPTION, inst/ChangeLog, inst/NEWS: Updates for
+ gplots 2.6.0
+ * [r1252] R/heatmap.2.R, man/heatmap.2.Rd: Add ability to control
+ location of individual heatmap.2 components
+
+2008-03-27 warnes
+
+ * [r1251] R/heatmap.2.R: Fix bug in handling rowsep, per suggestion
+ by Steven Paugh
+
+2008-01-04 warnes
+
+ * [r1238] man/overplot.Rd: Fix examples for overplot()
+
+2008-01-02 warnes
+
+ * [r1237] man/barplot2.Rd: Update Marc's email address
+
+2007-12-20 warnes
+
+ * [r1235] man/heatmap.2.Rd: Two letter clarification of help text
+ for heatmap.2()
+ * [r1234] man/ooplot.Rd: Restore plot layout at end of ooplot()
+ example
+
+2007-11-06 warnes
+
+ * [r1222] man/hist2d.Rd: Remove extraneous closing brace in the
+ hist2d documentation file
+
+2007-11-05 warnes
+
+ * [r1221] inst/NEWS: Fix typo in NEWS: col2hex() is the new
+ function, not col2rgb() which is part of grDevices
+
+2007-11-02 warnes
+
+ * [r1219] DESCRIPTION, NAMESPACE, inst/ChangeLog, inst/NEWS:
+ Updates for gplots 2.5.0
+ * [r1218] tests/heatmap2Test.Rout.save: Update saved test output
+ due to changes in how R reports warnings
+ * [r1217] ChangeLog, NEWS: Create soft links of gmodels/ChangeLog
+ -> gmodels/inst/ChangeLog, and gmodels/NEWS -> gmodels/inst/NEWS
+ for my convenience
+ * [r1216] ChangeLog, NEWS, inst/ChangeLog, inst/NEWS: Move actual
+ ChangeLog and NEWS files to gmodels/inst so they will be copied
+ into the installed R package area
+ * [r1215] man/bandplot.Rd, man/textplot.Rd: Fix code/doc mismatches
+ * [r1214] R/plot.lm.R: Update plot.lm2 to match changes made to
+ bandplot
+
+2007-11-01 warnes
+
+ * [r1213] ChangeLog, DESCRIPTION, R/replaceTabs.R, R/textplot.R: in
+ textplot(), convert tab characters to spaces before processing to
+ avoid problems with computing height and width of text including
+ tabs when using pdf()
+ * [r1212] R/overplot.R, man/overplot.Rd: Minor reformatting of
+ overplot code and docs
+
+2007-10-22 warnes
+
+ * [r1196] DESCRIPTION: Clarify GPL version
+
+2007-08-14 warnes
+
+ * [r1141] R/balloonplot.R: Correct error in balloonplot when z
+ contains NA values.
+ * [r1140] R/balloonplot.R, man/balloonplot.Rd: Augment
+ balloonplot() with control of character size and color for text
+ and label items
+ * [r1139] R/balloonplot.R: Correct balloonplot.default to properly
+ show specified x and y axis labels when explicitly provided
+
+2007-03-09 ggorjan
+
+ * [r1073] man/ooplot.Rd: use of \method in Rd markup - issues a
+ warning with _R_CHECK_RD_STYLE_=TRUE env. variable with R 2.5.0
+
+2007-02-08 warnes
+
+ * [r1052] DESCRIPTION: Bump version number
+ * [r1051] man/textplot.Rd: Update documentation for textplot()
+ * [r1050] R/col2hex.R, man/col2hex.Rd: Add col2rgb() function to
+ convert color names to rgb hex codes
+ * [r1049] R/textplot.R: Add paramaeters 'col.data', 'col.rows', and
+ 'col.columns' to
+ textplot.matrix to allow specification of the color of the matrix
+ data, rows, and columns.
+ * [r1048] R/bandplot.R: Add parameters to control line width and
+ line type.
+
+2006-11-14 ggorjan
+
+ * [r1012] R/bandplot.R, R/boxplot.n.R, R/lowess.R, R/plot.lm.R,
+ R/plotCI.R, R/plotmeans.R, R/residplot.R, R/wapply.R,
+ man/boxplot.n.Rd, man/plotCI.Rd, man/plotmeans.Rd: Removed
+ executable property
+
+2006-11-14 warnes
+
+ * [r1010] tests/heatmap2Test.Rout.save: Update output file to match
+ (trivial) changes in the test code.
+ * [r1008] ChangeLog, NEWS: Update ChangeLog and NEWS files for
+ release 2.3.2.
+ * [r1007] DESCRIPTION: Update version number
+ * [r1006] DESCRIPTION: Update version number and maintainer
+ * [r1005] man/heatmap.2.Rd: Correct problem with labeled
+ correlation matrix example. Thanks to Jean Vidal for reporting
+ the error..
+
+2006-08-02 warnes
+
+ * [r977] inst/doc/BalloonPlot.pdf, man/balloonplot.Rd,
+ man/bandplot.Rd, man/boxplot.n.Rd, man/colorpanel.Rd,
+ man/hist2d.Rd, man/ooplot.Rd, man/overplot.Rd, man/plot.lm2.Rd,
+ man/plotCI.Rd, man/plotmeans.Rd, man/residplot.Rd,
+ man/sinkplot.Rd, man/smartlegend.Rd, man/space.Rd,
+ man/textplot.Rd, man/wapply.Rd: Update my email address
+
+2006-06-26 nj7w
+
+ * [r967] R/heatmap.2.R: Fixed a bug which displayed warnings when
+ Rowv and Colv were specified as dendrograms
+
+2006-03-10 warnes
+
+ * [r937] tests/heatmap2Test.R: Remove code that added a local path
+
+2006-03-09 nj7w
+
+ * [r935] tests/heatmap2Test.R, tests/heatmap2Test.Rout.save: Added
+ the correct library path where gplots is installed locally and
+ corresponding .save file
+ * [r934] tests/heatmap2Test.R: Updated the tests file
+ * [r933] R/heatmap.2.R: Removed the condition Colv != Rowv as it
+ has already been taken care of
+ * [r932] rtPCR.rda: Deleted rtPCR.rda from the main directory
+ * [r931] ChangeLog: Added ChangeLog
+
+2006-03-07 nj7w
+
+ * [r919] DESCRIPTION, NEWS: Updated ChangeLog and NEWS
+ * [r918] tests, tests/heatmap2Test.R, tests/heatmap2Test.Rout.save:
+ Added the tests and fixed corrupted files
+ * [r917] data/rtPCR.rda: Replaced the corrupted rtPCR.rda file in
+ data directory
+ * [r916] tests: Removed the corrputed tests directory
+ * [r915] data/rtPCR.rda, rtPCR.rda: Replaced the corrupted
+ rtPCR.rda file in data directory
+
+2006-03-03 nj7w
+
+ * [r914] R/heatmap.2.R, man/heatmap.2.Rd: Updated the code and man
+ page to make sure the Rowv and Colv values are properly handled
+
+2006-03-02 warnes
+
+ * [r908] R/balloonplot.R: Adjust row total placement to adjust for
+ width of the totals
+ * [r907] DESCRIPTION, R/balloonplot.R, man/1: Row totals in
+ ballonplot were in reverse order. Fixed.
+
+2006-02-23 nj7w
+
+ * [r899] R/heatmap.2.R, tests/heatmap2Test.R: Add ability to scale
+ the color key using the new 'keysize' argument.
+ * [r898] tests, tests/heatmap2Test.R, tests/heatmap2Test.Rout.save:
+ Add tests for heatmap.2
+ * [r897] inst/doc/Figure1.eps, inst/doc/Table.eps,
+ inst/doc/bka.bst, inst/doc/heatmap2.R, inst/doc/heatmap2.tex,
+ inst/doc/regression_rank_image.Rda,
+ inst/doc/regression_rank_image_II.Rda: Move heatmap and
+ ballonplot paper source materials to their respective cvs modules
+ * [r896] inst/doc/BalloonPlot.R, inst/doc/BalloonPlot.tex,
+ inst/doc/Figure1.pdf, inst/doc/Figure2.pdf, inst/doc/Figure3.pdf,
+ inst/doc/Figure4.pdf, inst/doc/Rnews.sty,
+ inst/doc/SurvivedPop.pdf, inst/doc/SurvivedPopWhite.pdf,
+ inst/doc/SurvivedProp.pdf, inst/doc/TotalPop.pdf: Moved
+ balloonplot paper materials to BallonPlotPaper cvs module
+ * [r891] inst/doc/colSeparator.pdf, inst/doc/logData.pdf,
+ inst/doc/logDataColDendrogram.pdf, inst/doc/logDataColOrd.pdf,
+ inst/doc/logDataColOrdNo.pdf, inst/doc/logDataRowDendrogram.pdf,
+ inst/doc/origScale.pdf, inst/doc/rowSeparator.pdf,
+ inst/doc/scaled.pdf: Remove heatmap paper files and move them to
+ the HeatmapPaper cvs module.
+ * [r888] inst/doc/colSeparator.pdf, inst/doc/logData.pdf,
+ inst/doc/logDataColDendrogram.pdf, inst/doc/logDataColOrd.pdf,
+ inst/doc/logDataColOrdNo.pdf, inst/doc/logDataRowDendrogram.pdf,
+ inst/doc/origScale.pdf, inst/doc/rowSeparator.pdf,
+ inst/doc/scaled.pdf: Added figures for heatmap2 paper
+ * [r887] inst/doc/regression_rank_image.Rda,
+ inst/doc/regression_rank_image_II.Rda: Added the .Rda files for
+ the heatmap2 paper
+ * [r886] inst/doc/heatmap2.tex: Added the source - (tex file) of
+ the heatmap paper
+ * [r885] inst/doc/heatmap2.R: Added the code for the figures of
+ heatmap paper
+
+2006-02-21 nj7w
+
+ * [r884] R/heatmap.2.R, man/heatmap.2.Rd: Minor updates to
+ heatmap.2 - fixed Rowv, Colv and dendrogram behaviour. Now
+ Rowv=NULL or FALSE both imply no dendrogram computation.
+
+2006-01-12 warnes
+
+ * [r844] inst/doc/BalloonPlot.R, inst/doc/BalloonPlot.pdf,
+ inst/doc/BalloonPlot.tex, inst/doc/Figure1.pdf,
+ inst/doc/Figure2.pdf, inst/doc/Figure3.pdf, inst/doc/Figure4.pdf:
+ more updates
+ * [r843] inst/doc/bka.bst: Add Biometrica bibliography style file
+ * [r842] inst/doc/BalloonPlot.tex: A little more.
+ * [r841] inst/doc/BalloonPlot.tex: Updates to respond to referee.
+
+2006-01-12 nj7w
+
+ * [r840] inst/doc/BalloonPlot.tex: Added references
+
+2005-12-13 nj7w
+
+ * [r811] inst/doc/BalloonPlot.tex: Fixed Nitin's company name
+ * [r809] ChangeLog, NEWS: Updated NEWS and removed ChangeLog
+
+2005-12-12 nj7w
+
+ * [r802] R/plotmeans.R: Fixed bug in plotmeans - based on Stefano
+ Calza's suggestion
+
+2005-12-07 nj7w
+
+ * [r787] DESCRIPTION: Updated version number
+ * [r786] NAMESPACE, R/plot.lm.R, man/plot.lm2.Rd: Added plot.lm
+ * [r785] man/barplot2.Rd: Changed the default grey colors to heat
+ colors, if height is matrix
+ * [r784] R/barplot2.R: Changed the default greay colors to heat
+ colors, if height is matrix
+
+2005-12-06 nj7w
+
+ * [r783] man/barplot2.Rd: Fixed minor error in documentation of
+ barplot2
+
+2005-12-02 warnes
+
+ * [r777] R/plot.lm.R: Remove .Alias calls, since .Alias is defunct.
+
+2005-12-01 nj7w
+
+ * [r776] man/balloonplot.Rd, man/bandplot.Rd, man/boxplot.n.Rd,
+ man/colorpanel.Rd, man/overplot.Rd, man/plotmeans.Rd,
+ man/textplot.Rd, man/wapply.Rd: Updated Greg's email address
+
+2005-11-23 nj7w
+
+ * [r764] inst/doc/BalloonPlot.R, inst/doc/BalloonPlot.pdf,
+ inst/doc/BalloonPlot.tex, inst/doc/Figure2.pdf: Updated Figure 2
+ colors
+
+2005-11-18 warnes
+
+ * [r743] inst/doc/BalloonPlot.pdf, inst/doc/Figure1.pdf,
+ inst/doc/Figure2.pdf, inst/doc/Figure3.pdf, inst/doc/Figure4.pdf:
+ Latest version of the pdf files
+ * [r742] inst/doc/BalloonPlot.tex: Nitin works for the Cambrige
+ Group, not Pfizer.
+ * [r741] inst/doc/BalloonPlot.tex: Minor text rewording.
+ * [r740] inst/doc/BalloonPlot.R, inst/doc/BalloonPlot.tex: More
+ edits.
+ * [r739] R/balloonplot.R: Recent changes to align row totals with
+ the overall total broke how
+ the marginal cumulative fractions were displayed. This patch
+ fixes
+ the problem.
+ * [r737] DESCRIPTION, R/balloonplot.R, R/plot.lm.R,
+ inst/doc/BalloonPlot.pdf, man/balloonplot.Rd: - Update
+ documentation for balloonplot to match the latest code.
+ - Correct spelling of 'show.zeroes' to 'show.zeros'
+ * [r736] R/colorpanel.R: More changes: colorpanel now allows only 2
+ colors to be specified if
+ no 'middle' color is desired.
+
+2005-11-17 warnes
+
+ * [r735] R/balloonplot.R: Allow user to control removal of
+ duplicate entries in balloonplot.
+ * [r734] R/colorpanel.R, man/colorpanel.Rd: Extend colorpanel to
+ handle just two-colors in addition to three.
+
+2005-11-09 nj7w
+
+ * [r733] inst/doc/BalloonPlot.pdf: Updated the pdf file
+ * [r732] inst/doc/BalloonPlot.R, inst/doc/BalloonPlot.tex: Updated
+ the changes
+ * [r731] inst/doc/Figure4.pdf: Modified figure 4
+ * [r730] inst/doc/BalloonPlot.R: Updated code
+ * [r729] inst/doc/Figure3.pdf: Modified figure 3
+ * [r728] inst/doc/Figure2.pdf: Modified figure 2
+ * [r727] inst/doc/Figure1.pdf: Modified figure 1
+
+2005-11-08 nj7w
+
+ * [r726] man/plotCI.Rd: Updated Greg's email
+
+2005-11-07 nj7w
+
+ * [r725] inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex: Minor
+ modifications to fit the code properly on pdf
+
+2005-11-07 warnes
+
+ * [r724] inst/doc/BalloonPlot.R: Add R code that generates plots
+ * [r723] inst/doc/Figure2.pdf, inst/doc/Figure3.pdf,
+ inst/doc/Figure4.pdf: Add figures to CVS
+ * [r722] inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex,
+ inst/doc/Figure1.pdf: Text changes
+
+2005-11-04 warnes
+
+ * [r721] R/balloonplot.R: Fix some alignment issues.
+ * [r720] inst/doc/BalloonPlot.pdf, inst/doc/Table.pdf: Remove
+ Table.pdf since it is no longer needed
+ * [r719] inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex,
+ inst/doc/Figure1.pdf: Nitin's Changes
+ * [r718] inst/doc/SurvivedPop.pdf, inst/doc/SurvivedPopWhite.pdf,
+ inst/doc/SurvivedProp.pdf, inst/doc/TotalPop.pdf: Add figure
+ plots
+ * [r717] inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex: Fix
+ paths
+
+2005-10-20 nj7w
+
+ * [r705] inst/doc/Figure1.eps, inst/doc/Table.eps: added the eps
+ version of figures
+ * [r704] inst/doc/BalloonPlot.pdf: Updated BallonPlot.pdf
+ * [r703] inst/doc/SurvivedPop.pdf, inst/doc/SurvivedPopWhite.pdf,
+ inst/doc/SurvivedProp.pdf, inst/doc/TotalPop.pdf: Removed Old
+ Figure
+ * [r702] inst/doc/Figure1.pdf, inst/doc/Table.pdf: Added the new
+ figure - for total popluation - Balloonplot
+ * [r701] inst/doc/BalloonPlot.tex: Modified the BallonPlot article
+ * [r700] inst/doc/BalloonPlot.tex: Added references
+
+2005-10-19 arnima
+
+ * [r697] man/rich.color.Rd: The last example now displays the
+ correct heat.colors.
+ Default 'palette' argument is now a single string, not a vector.
+ * [r696] R/rich.color.R: Default 'palette' argument is now a single
+ string, not a vector.
+
+2005-10-14 warnes
+
+ * [r694] DESCRIPTION, R/balloonplot.R, man/balloonplot.Rd:
+ Formatting fixes:
+ - Handle multiple row or column category variables
+ - Separate rows/columns of category labels by lines
+ - Fix handling of 'cumsum' plots on row/column labels
+ - Improve display of row/column sums
+
+2005-10-13 warnes
+
+ * [r693] man/balloonplot.Rd: Add example using Titanic data that
+ exercises the multi-factor
+ display.
+
+2005-10-11 warnes
+
+ * [r692] R/balloonplot.R: Initial changes to allow multiple x and y
+ factor variables. Yet to
+ be done: 1) remove extra 'boxes'. 2) omit duplicated values
+
+2005-10-04 warnes
+
+ * [r691] inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex: more
+ minor fixes
+ * [r690] inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex: fix
+ spacing
+ * [r689] inst/doc/Rnews.sty: Inlcude Rnews.sty
+ * [r688] inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex: Some
+ textual edits.
+
+2005-10-03 nj7w
+
+ * [r687] inst/doc/SurvivedPop.pdf, inst/doc/SurvivedPopWhite.pdf,
+ inst/doc/SurvivedProp.pdf, inst/doc/TotalPop.pdf: Added figures
+ for the R-News Article
+
+2005-09-29 nj7w
+
+ * [r680] inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex:
+ Updated the documentation - added the name of the person who
+ asked the question
+ * [r679] inst, inst/doc, inst/doc/BalloonPlot.pdf,
+ inst/doc/BalloonPlot.tex: Added R-news article
+
+2005-09-12 nj7w
+
+ * [r671] man/hist2d.Rd, man/ooplot.Rd, man/residplot.Rd,
+ man/sinkplot.Rd, man/smartlegend.Rd, man/space.Rd: Updated Greg's
+ email
+ * [r670] R/balloonplot.R: Updated version of balloonplot - by
+ Romain Francois <fra...@fr...>
+
+2005-09-09 nj7w
+
+ * [r669] ChangeLog, DESCRIPTION: Updated the version and ChangeLog
+ * [r668] R/balloonplot.R, man/balloonplot.Rd: Changes in ballon
+ plot based on Romain Francois (fra...@fr...)
+ suggestions
+
+2005-09-06 nj7w
+
+ * [r666] DESCRIPTION: Updated package dependencies
+ * [r665] NEWS: Added NEWS
+
+2005-09-02 nj7w
+
+ * [r655] ChangeLog: Added ChangeLog
+
+2005-08-31 nj7w
+
+ * [r644] DESCRIPTION: Added DESCRIPTION file
+ * [r643] DESCRIPTION.in: removed DESCRIPTION.in
+
+2005-06-09 nj7w
+
+ * [r625] R/balloonplot.R, R/bandplot.R, R/boxplot.n.R,
+ R/colorpanel.R, R/heatmap.2.R, R/hist2d.R, R/lowess.R,
+ R/ooplot.R, R/overplot.R, R/plotCI.R, R/plotmeans.R,
+ R/qqnorm.aov.R, R/residplot.R, R/rich.color.R, R/sinkplot.R,
+ R/smartlegend.R, R/space.R, R/textplot.R, R/wapply.R, man/1,
+ man/bandplot.Rd, man/barplot2.Rd, man/boxplot.n.Rd,
+ man/hist2d.Rd, man/lowess.Rd, man/plotCI.Rd, man/plotmeans.Rd,
+ man/residplot.Rd, man/space.Rd, man/wapply.Rd: Updating the
+ version number, and various help files to synchronize splitting
+ of gregmisc bundle in 4 individual components.
+ * [r624] R/barplot2.R: Changes based on Marc Schwartz's suggestions
+ to handel 0's and NA's appropriately.
+
+2005-05-13 nj7w
+
+ * [r621] man/heatmap.2.Rd: 1) Using dQuote.ascii function in
+ read.xls as the new version of dQuote doesn't work proprly with
+ UTF-8 locale.
+ 2) Modified CrossTable.Rd usage in gmodels
+ 3) Modified heatmap.2 usage in gplots.
+
+2005-04-04 warnes
+
+ * [r603] R/overplot.R: Explicitly reference package containing
+ lowess.formula in
+ panel.overplot(). This should fix the error reported by Troels
+ Ring
+ <tr...@gv...>.
+
+2005-02-26 nj7w
+
+ * [r565] R/heatmap.2.R, man/heatmap.2.Rd, man/rich.color.Rd,
+ man/sinkplot.Rd, man/textplot.Rd: *** empty log message ***
+
+2005-02-25 warnes
+
+ * [r563] man/rich.color.Rd: Integrate changes submitted by Arni
+ Magnusson
+ * [r559] NAMESPACE: Add dependency imports from 'stats' package.
+
+2005-02-22 warnes
+
+ * [r555] R/bandplot.R: Fix problem in passing graphical parameters
+ (xlim,etc).@
+
+2005-02-08 warnes
+
+ * [r541] DESCRIPTION.in: Improve package title.
+ * [r540] R/heatmap.2.R: Ignore missing values when computing
+ symmetric range.
+
+2005-02-02 warnes
+
+ * [r530] man/plotmeans.Rd: Add more extensive example.
+
+2005-01-14 warnes
+
+ * [r516] R/textplot.R: Code can be simplified because R now
+ supports selecting a fixed width font.
+
+2005-01-12 warnes
+
+ * [r515] DESCRIPTION.in: Add dependency on R 1.9.0+ to prevent
+ poeple from installing on old
+ versions of R which don't support namespaces.
+
+2004-11-30 warnes
+
+ * [r495] R/heatmap.2.R, man/heatmap.2.Rd: 1. Add new parameters for
+ controlling color key:
+ - If `symkey==TRUE', the color key will be made symmetric about
+ 0.
+ - The `densadj' parameter can be used to modify the smoother
+ width
+ (see the `adjust' parameter under `help(density)') for the
+ density
+ plotted in the key.
+
+ 2. Fix handling of rowsep/colsep.
+
+ 3. Vector of length 2 giving the width (colsep) or height
+ (rowsep) the separator box
+ drawn by colsep and rowsep as a function of the width (colsep) or
+ height (rowsep) of a cell.
+
+ 4. Appropriate changes to the corresponding help page, plus some
+ minor formatting changes.
+
+2004-11-03 warnes
+
+ * [r474] R/heatmap.2.R: Fix bugs in layout of cell notes. They were
+ being plotted top down
+ rather than bottom up. Further reordering of the x matrix didn't
+ also reorder the notes. Both issues should now be resolved.
+
+2004-09-27 warneg
+
+ * [r461] DESCRIPTION, DESCRIPTION.in, man/sinkplot.Rd,
+ man/textplot.Rd: Updated to pass R CMD check.
+
+2004-09-03 warneg
+
+ * [r453] man/textplot.Rd: Provide explicit package for call to
+ nobs.
+ * [r452] man/heatmap.2.Rd: Fix typos.
+ * [r446] DESCRIPTION, NAMESPACE, R/balloonplot.R, R/bandplot.R,
+ R/barplot2.R, R/boxplot.n.R, R/colorpanel.R, R/heatmap.2.R,
+ R/hist2d.R, R/lowess.R, R/ooplot.R, R/overplot.R, R/plotCI.R,
+ R/plotmeans.R, R/qqnorm.aov.R, R/residplot.R, R/rich.color.R,
+ R/sinkplot.R, R/smartlegend.R, R/space.R, R/textplot.R,
+ R/wapply.R: initial bundle checkin
+
+2004-09-02 warneg
+
+ * [r442] DESCRIPTION, DESCRIPTION.in, NAMESPACE, man/1,
+ man/residplot.Rd: Initial revision
+
+2004-07-29 warnes
+
+ * [r426] R/plotCI.R, man/plotCI.Rd: Integrate changes from the
+ version of plotCI maintained by Martin Maechler.
+
+2004-06-30 warnes
+
+ * [r393] R/textplot.R: Remove commented-out code.
+ * [r392] R/textplot.R: Fixed text size calculations
+
+2004-06-28 warnes
+
+ * [r391] R/barplot2.R, man/barplot2.Rd: - Default 2-d color set to
+ grey as in (v2.0.0) r-devel
+ - The default (v1.9.1) barplot method now handles vectors and 1-d
+ arrays
+ (e.g., obtained by table()) the same, and uses grey instead of
+ heat color palettes in these cases. (Also fixes PR#6776.)
+ - Updated to reflect the addition of 'offset' argument in base
+ - Fix bug in stacked barplots, which would not be plotted
+ properly
+
+2004-06-24 warnes
+
+ * [r385] R/heatmap.2.R, man/heatmap.2.Rd: Add ability to specify
+ color of NA cells.
+
+2004-05-27 warnes
+
+ * [r349] man/plotCI.Rd: Fix spelling error.
+
+2004-05-26 warnes
+
+ * [r347] R/overplot.R: One more fix to get it right.
+ * [r346] R/overplot.R: Use triple-colon operator ':::' to access
+ plot.formula from the graphics package.
+ * [r344] man/rich.color.Rd: Replace 'F' by 'FALSE' to pass R CMD
+ check.
+
+2004-05-25 warnes
+
+ * [r338] R/overplot.R: Work around bug in R 1.9.X due to
+ plot.formula() not having the same
+ arguments as plot().
+ * [r336] R/rich.color.R, man/rich.color.Rd: Add rich.colors()
+ submitted by Arni Magnusson <arnima@u.washington.edu>.
+ * [r328] R/ooplot.R, man/ooplot.Rd: ??
+
+2004-05-24 warnes
+
+ * [r324] R/plotCI.R, R/plotmeans.R: Modified to use invalid() to
+ check arguments instead of missing().
+ This fixes some build errors under R-1.9.0-Patched.
+
+2004-04-22 warnes
+
+ * [r319] R/ooplot.R, man/ooplot.Rd: Integrate changes from Lodewijk
+ Bonebakker <bon...@co...>
+
+2004-04-13 warnes
+
+ * [r318] R/space.R, man/space.Rd: Add ability to space points along
+ 'y' direction.
+
+2004-04-02 warnes
+
+ * [r313] R/smartlegend.R: Fixed smartlegend() positioning when x
+ and/or y axis are log-scale.
+
+2004-03-30 warnes
+
+ * [r311] R/textplot.R: - Fix bug in textplot() reported by Wright,
+ Kevin <kev...@pi...>.
+
+2004-03-26 warnes
+
+ * [r305] man/textplot.Rd: Update to match changes in textplot()
+ code.
+ * [r304] man/ooplot.Rd: Remove Windows EOL characters.
+ * [r302] man/barplot2.Rd: - Remove some commented-out code.
+ - Remove cvs log tag.
+ * [r300] R/textplot.R: Misc changes.
+
+2004-02-17 warnes
+
+ * [r290] man/ooplot.Rd: Minor fix to ooplot documentation.
+ * [r289] R/ooplot.R, man/ooplot.Rd: Integrate ooplot updates
+ provided by Lodewijk Bonebakker
+ <bon...@co...>
+
+2004-02-02 warnes
+
+ * [r287] R/colorpanel.R, man/colorpanel.Rd: - Add colorpanel
+ function, which generates a smoothly varying band of
+ colors over a three color range (lo, mid, high).
+
+2004-01-21 warnes
+
+ * [r283] man/textplot.Rd: - Correct arguments to halign to match
+ code.
+ * [r281] R/lowess.R: Track R 1.9.0's move of 'lowess' from the base
+ package to the (new)
+ stats package.
+ * [r279] man/sinkplot.Rd: - Fix sinkplot() example by replacing 'T'
+ with 'TRUE'.
+ * [r278] man/ooplot.Rd: - Add some more details to the ooplot()
+ documentation. The
+ documentation is *not* complete.
+ * [r277] R/textplot.R: - Mark sprint() as depreciated.
+ - Replace references to sprint with capture.output()
+ - Use match.arg for halign and valign arguments to
+ textplot.default.
+ - Fix textplot.character so that a vector of characters is
+ properly
+ displayed. Previouslt, character vectors were plotted on top of
+ each
+ other.
+
+2004-01-19 warnes
+
+ * [r276] R/sinkplot.R, man/sinkplot.Rd: New function sinkplot(), as
+ requested on R-devel by Kevin Wright
+ <kw...@es...> in
+ https://www.stat.math.ethz.ch/pipermail/r-devel/2004-January/028483.html.
+
+2004-01-15 warnes
+
+ * [r...
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