[R-gregmisc-users] SF.net SVN: r-gregmisc:[1360] trunk/gplots

[<wa...@us...>]

Revision: 1360
          http://r-gregmisc.svn.sourceforge.net/r-gregmisc/?rev=1360&view=rev
Author:   warnes
Date:     2009-10-10 17:32:26 +0000 (Sat, 10 Oct 2009)

Log Message:
-----------
Various minor changes to remove new R CMD CHECK warnings.

Modified Paths:
--------------
    trunk/gplots/R/col2hex.R
    trunk/gplots/man/colorpanel.Rd
    trunk/gplots/man/lowess.Rd
    trunk/gplots/man/ooplot.Rd
    trunk/gplots/man/overplot.Rd
    trunk/gplots/man/smartlegend.Rd
    trunk/gplots/man/space.Rd
    trunk/gplots/tests/heatmap2Test.Rout.save

Modified: trunk/gplots/R/col2hex.R
===================================================================
--- trunk/gplots/R/col2hex.R	2009-10-10 16:39:22 UTC (rev 1359)
+++ trunk/gplots/R/col2hex.R	2009-10-10 17:32:26 UTC (rev 1360)
@@ -3,7 +3,7 @@
     colMat <- col2rgb(cname)
     rgb(
         red=colMat[1,]/255,
-        green=colMat[2,]/255
-        blue=colMat[3,]/255,
+        green=colMat[2,]/255,
+        blue=colMat[3,]/255
         )
   }

Modified: trunk/gplots/man/colorpanel.Rd
===================================================================
--- trunk/gplots/man/colorpanel.Rd	2009-10-10 16:39:22 UTC (rev 1359)
+++ trunk/gplots/man/colorpanel.Rd	2009-10-10 17:32:26 UTC (rev 1360)
@@ -43,7 +43,7 @@
   Vector of HTML-style RGB colors.
 }
 \author{ Gregory R. Warnes \email{gr...@ra...} }
-\seealso{ \code{\link[base]{colors} } }
+\seealso{ \code{\link{colors} } }
 \examples{
 
 showpanel <- function(col)

Modified: trunk/gplots/man/lowess.Rd
===================================================================
--- trunk/gplots/man/lowess.Rd	2009-10-10 16:39:22 UTC (rev 1359)
+++ trunk/gplots/man/lowess.Rd	2009-10-10 17:32:26 UTC (rev 1360)
@@ -70,7 +70,7 @@
   LOWESS: A program for smoothing scatterplots by robust locally weighted
   regression. \emph{The American Statistician}, \bold{35}, 54.
 }
-\seealso{\code{\link[modreg]{loess}} (in package \code{modreg}), a newer
+\seealso{\code{\link{loess}} (in package \code{modreg}), a newer
   formula based version of \code{lowess} (with different defaults!).
 }
 \examples{

Modified: trunk/gplots/man/ooplot.Rd
===================================================================
--- trunk/gplots/man/ooplot.Rd	2009-10-10 16:39:22 UTC (rev 1359)
+++ trunk/gplots/man/ooplot.Rd	2009-10-10 17:32:26 UTC (rev 1360)
@@ -160,7 +160,7 @@
   by Gregory R. Warnes \email{gr...@ra...}.
   Based on barplot2().
   }
-\seealso{ \code{\link[plot]{plot}}, \code{\link[plot]{boxplot}} }
+\seealso{ \code{\link{plot}}, \code{\link{boxplot}} }
 \examples{
      data(VADeaths, package = "datasets")
 

Modified: trunk/gplots/man/overplot.Rd
===================================================================
--- trunk/gplots/man/overplot.Rd	2009-10-10 16:39:22 UTC (rev 1359)
+++ trunk/gplots/man/overplot.Rd	2009-10-10 17:32:26 UTC (rev 1360)
@@ -20,7 +20,7 @@
   \item{same.scale}{ Logical value indicating whether the plot region
     should have the same range for all plots.  Defaults to \code{FALSE}.}
   \item{xlab, ylab, xlim, ylim, main}{ Standard plotting parameters.  See
-    \code{\link[base]{plot}} for details}
+    \code{\link{plot}} for details}
   \item{min.y, max.y}{Scalar or vector values used to specify the y
     plotting limits for individual plots.  If a single scalar value is
     provided, it will be used for all plots. These parameters can be
@@ -57,8 +57,8 @@
 }
 \author{ Gregory R. Warnes \email{gr...@ra...} }
 \seealso{
-  \code{\link[base]{interaction.plot}},
-  \code{\link[base]{coplot}} for alternative visualizations of 3-way data.}
+  \code{\link{interaction.plot}},
+  \code{\link{coplot}} for alternative visualizations of 3-way data.}
 \examples{
 
 # Example teratogenicity rtPCR data

Modified: trunk/gplots/man/smartlegend.Rd
===================================================================
--- trunk/gplots/man/smartlegend.Rd	2009-10-10 16:39:22 UTC (rev 1359)
+++ trunk/gplots/man/smartlegend.Rd	2009-10-10 17:32:26 UTC (rev 1360)
@@ -24,7 +24,7 @@
   Same as \code{legend}
 }
 \author{Gregory R. Warnes \email{gr...@ra...} }
-\seealso{ \code{\link[base]{legend}} }
+\seealso{ \code{\link{legend}} }
 \examples{
 
 x <- rnorm(100)

Modified: trunk/gplots/man/space.Rd
===================================================================
--- trunk/gplots/man/space.Rd	2009-10-10 16:39:22 UTC (rev 1359)
+++ trunk/gplots/man/space.Rd	2009-10-10 17:32:26 UTC (rev 1360)
@@ -64,7 +64,7 @@
   \item{y}{y location of each input point}
 }
 \author{ Gregory R. Warnes \email{gr...@ra...} }
-\seealso{ \code{\link{jitter}}, \code{\link[base]{sunflowerplot}} }
+\seealso{ \code{\link{jitter}}, \code{\link{sunflowerplot}} }
 
 \examples{
    x <- rep(1:5, 10)

Modified: trunk/gplots/tests/heatmap2Test.Rout.save
===================================================================
--- trunk/gplots/tests/heatmap2Test.Rout.save	2009-10-10 16:39:22 UTC (rev 1359)
+++ trunk/gplots/tests/heatmap2Test.Rout.save	2009-10-10 17:32:26 UTC (rev 1360)
@@ -1,5 +1,5 @@
 
-R version 2.9.0 (2009-04-17)
+R version 2.10.0 alpha (2009-10-08 r49995)
 Copyright (C) 2009 The R Foundation for Statistical Computing
 ISBN 3-900051-07-0
 
@@ -18,6 +18,14 @@
 > library(gplots)
 Loading required package: gtools
 Loading required package: gdata
+
+Attaching package: 'gdata'
+
+
+	The following object(s) are masked from package:utils :
+
+	 object.size 
+
 Loading required package: caTools
 Loading required package: bitops
 Loading required package: grid


This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.