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[R-gregmisc-users] SF.net SVN: r-gregmisc:[1320] trunk/gplots/inst/ChangeLog
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From: <wa...@us...> - 2009-05-08 22:31:03
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Revision: 1320
http://r-gregmisc.svn.sourceforge.net/r-gregmisc/?rev=1320&view=rev
Author: warnes
Date: 2009-05-08 22:30:55 +0000 (Fri, 08 May 2009)
Log Message:
-----------
We don't want the Changelog in svn, since it is autogenerated from svn logs!
Removed Paths:
-------------
trunk/gplots/inst/ChangeLog
Deleted: trunk/gplots/inst/ChangeLog
===================================================================
--- trunk/gplots/inst/ChangeLog 2009-05-08 22:01:12 UTC (rev 1319)
+++ trunk/gplots/inst/ChangeLog 2009-05-08 22:30:55 UTC (rev 1320)
@@ -1,1759 +0,0 @@
-2008-06-16 14:18 warnes
-
- * TODO, inst/TODO: Add TODO list to gplots
-
-2008-05-20 01:13 warnes
-
- * DESCRIPTION, man/plot.lm2.Rd: Update man page to match recent
- changes to plot.lm2()
-
-2008-05-20 01:08 warnes
-
- * man/venn.Rd: More work on documentation for venn()
-
-2008-05-20 01:07 warnes
-
- * R/bandplot.R, man/bandplot.Rd: Fix code/doc mismatch due to
- recent changes to bandplot()
-
-2008-05-20 00:14 warnes
-
- * DESCRIPTION, NAMESPACE, R/venn.R, man/venn.Rd: Add Venn Diagram
- plot submitted by Steffen Moeller
-
-2008-05-07 18:59 warnes
-
- * DESCRIPTION, R/bandplot.R: Improve performance of bandplot by
- calculating running standard deviation using caTools::runsd()
- instead of (ver slow) window() call. In addtion, the standard
- deviations are now only calculated once, rather than once for
- each band.
-
-2008-05-07 18:57 warnes
-
- * R/plot.lm.R: Improve performance of plot.lm for large lm objects
- by using fitted() instead of predict() to get y-hat
-
-2008-05-05 20:28 warnes
-
- * DESCRIPTION, R/bandplot.R: Use caTools's runsd in bandplot for a
- dramatic speedup for large data
-
-2008-05-05 20:28 warnes
-
- * NAMESPACE: Add import of gtools::reorder.factor for ballonplot
- man page
-
-2008-05-05 20:27 warnes
-
- * R/balloonplot.R, man/balloonplot.Rd: balloonplot: Add option to
- scale balloons so [min,max]->[0,1] (relative) or so [0,max] <-
- [0,1] (absolute)
-
-2008-04-07 17:09 warnes
-
- * man/barplot2.Rd: Fix typo in barplot2() man page
-
-2008-04-07 16:52 warnes
-
- * DESCRIPTION, inst/ChangeLog, inst/NEWS: Updates for gplots 2.6.0
-
-2008-04-07 16:47 warnes
-
- * R/heatmap.2.R, man/heatmap.2.Rd: Add ability to control location
- of individual heatmap.2 components
-
-2008-03-27 22:36 warnes
-
- * R/heatmap.2.R: Fix bug in handling rowsep, per suggestion by
- Steven Paugh
-
-2008-01-04 18:59 warnes
-
- * man/overplot.Rd: Fix examples for overplot()
-
-2008-01-02 16:58 warnes
-
- * man/barplot2.Rd: Update Marc's email address
-
-2007-12-20 22:48 warnes
-
- * man/heatmap.2.Rd: Two letter clarification of help text for
- heatmap.2()
-
-2007-12-20 22:24 warnes
-
- * man/ooplot.Rd: Restore plot layout at end of ooplot() example
-
-2007-11-06 16:24 warnes
-
- * man/hist2d.Rd: Remove extraneous closing brace in the hist2d
- documentation file
-
-2007-11-05 15:32 warnes
-
- * inst/NEWS: Fix typo in NEWS: col2hex() is the new function, not
- col2rgb() which is part of grDevices
-
-2007-11-02 19:32 warnes
-
- * DESCRIPTION, NAMESPACE, inst/ChangeLog, inst/NEWS: Updates for
- gplots 2.5.0
-
-2007-11-02 19:32 warnes
-
- * tests/heatmap2Test.Rout.save: Update saved test output due to
- changes in how R reports warnings
-
-2007-11-02 18:22 warnes
-
- * ChangeLog, NEWS: Create soft links of gmodels/ChangeLog ->
- gmodels/inst/ChangeLog, and gmodels/NEWS -> gmodels/inst/NEWS for
- my convenience
-
-2007-11-02 18:21 warnes
-
- * ChangeLog, NEWS, inst/ChangeLog, inst/NEWS: Move actual ChangeLog
- and NEWS files to gmodels/inst so they will be copied into the
- installed R package area
-
-2007-11-02 18:18 warnes
-
- * man/bandplot.Rd, man/textplot.Rd: Fix code/doc mismatches
-
-2007-11-02 18:18 warnes
-
- * R/plot.lm.R: Update plot.lm2 to match changes made to bandplot
-
-2007-11-01 20:20 warnes
-
- * ChangeLog, DESCRIPTION, R/replaceTabs.R, R/textplot.R: in
- textplot(), convert tab characters to spaces before processing to
- avoid problems with computing height and width of text including
- tabs when using pdf()
-
-2007-11-01 20:18 warnes
-
- * R/overplot.R, man/overplot.Rd: Minor reformatting of overplot
- code and docs
-
-2007-10-22 02:24 warnes
-
- * branches/GenerateFORMATSfromFactorObjects/SASxport/DESCRIPTION,
- trunk/MSOfficeUtil/DESCRIPTION, trunk/RMCMC/DESCRIPTION,
- trunk/Rlsf/DESCRIPTION, trunk/SASxport/DESCRIPTION,
- trunk/bwRF/DESCRIPTION, trunk/exp.ssize/DESCRIPTION,
- trunk/fork/DESCRIPTION, trunk/gdata/DESCRIPTION,
- trunk/gmodels/DESCRIPTION, DESCRIPTION,
- trunk/gregmisc/DESCRIPTION, trunk/ssize/DESCRIPTION: Clarify GPL
- version
-
-2007-08-14 19:14 warnes
-
- * R/balloonplot.R: Correct error in balloonplot when z contains NA
- values.
-
-2007-08-14 18:48 warnes
-
- * R/balloonplot.R, man/balloonplot.Rd: Augment balloonplot() with
- control of character size and color for text and label items
-
-2007-08-14 18:11 warnes
-
- * R/balloonplot.R: Correct balloonplot.default to properly show
- specified x and y axis labels when explicitly provided
-
-2007-03-09 09:05 ggorjan
-
- * man/ooplot.Rd: use of \method in Rd markup - issues a warning
- with _R_CHECK_RD_STYLE_=TRUE env. variable with R 2.5.0
-
-2007-02-08 23:05 warnes
-
- * DESCRIPTION: Bump version number
-
-2007-02-08 22:03 warnes
-
- * man/textplot.Rd: Update documentation for textplot()
-
-2007-02-08 21:56 warnes
-
- * R/col2hex.R, man/col2hex.Rd: Add col2rgb() function to convert
- color names to rgb hex codes
-
-2007-02-08 21:32 warnes
-
- * R/textplot.R: Add paramaeters 'col.data', 'col.rows', and
- 'col.columns' to
- textplot.matrix to allow specification of the color of the matrix
- data, rows, and columns.
-
-2007-02-08 16:56 warnes
-
- * R/bandplot.R: Add parameters to control line width and line type.
-
-2006-11-14 22:25 ggorjan
-
- * trunk/gdata/man/combine.Rd, trunk/gdata/man/frameApply.Rd,
- trunk/gmodels/R/ci.R, trunk/gmodels/R/fast.prcomp.R,
- trunk/gmodels/man/ci.Rd, R/bandplot.R, R/boxplot.n.R, R/lowess.R,
- R/plot.lm.R, R/plotCI.R, R/plotmeans.R, R/residplot.R,
- R/wapply.R, man/boxplot.n.Rd, man/plotCI.Rd, man/plotmeans.Rd,
- trunk/gtools/R/combinations.R, trunk/gtools/R/running.R,
- trunk/gtools/man/ELISA.Rd, trunk/gtools/man/combinations.Rd:
- Removed executable property
-
-2006-11-14 18:29 warnes
-
- * tests/heatmap2Test.Rout.save: Update output file to match
- (trivial) changes in the test code.
-
-2006-11-14 18:07 warnes
-
- * ChangeLog, NEWS: Update ChangeLog and NEWS files for release
- 2.3.2.
-
-2006-11-14 17:59 warnes
-
- * DESCRIPTION: Update version number
-
-2006-11-14 17:57 warnes
-
- * DESCRIPTION: Update version number and maintainer
-
-2006-11-14 17:56 warnes
-
- * man/heatmap.2.Rd: Correct problem with labeled correlation matrix
- example. Thanks to Jean Vidal for reporting the error..
-
-2006-08-02 22:21 warnes
-
- * trunk/BalloonPlotPaper/BalloonPlot.pdf,
- trunk/BalloonPlotPaper/BalloonPlot.tex,
- trunk/MSOfficeUtil/DESCRIPTION,
- trunk/PathwayModeling/thesispaper/slides.tex,
- trunk/RMCMC/DESCRIPTION, trunk/RMCMC/man/make.density.Rd,
- trunk/Rlsf/DESCRIPTION, trunk/Rlsf/man/lsf.numcpu.Rd,
- trunk/Rlsf/man/lsf.parRapply.Rd, trunk/Rlsf/man/scat.Rd,
- trunk/bwRF/DESCRIPTION, trunk/bwRF/man/RF.Rd,
- trunk/exp.ssize/inst/doc/ssize.pdf,
- trunk/exp.ssize/inst/doc/ssize.tex, trunk/fork/DESCRIPTION,
- trunk/fork/man/exit.Rd, trunk/fork/man/fork.Rd,
- trunk/fork/man/getpid.Rd, trunk/fork/man/kill.Rd,
- trunk/fork/man/signame.Rd, trunk/fork/man/wait.Rd,
- trunk/gdata/inst/doc/gregmisc.tex,
- trunk/gdata/man/ConvertMedUnits.Rd,
- trunk/gdata/man/aggregate.table.Rd, trunk/gdata/man/combine.Rd,
- trunk/gdata/man/interleave.Rd, trunk/gdata/man/matchcols.Rd,
- trunk/gdata/man/nobs.Rd, trunk/gdata/man/read.xls.Rd,
- trunk/gdata/man/rename.vars.Rd, trunk/gdata/man/reorder.Rd,
- trunk/gdata/man/trim.Rd, trunk/gdata/man/unmatrix.Rd,
- trunk/gdata/man/upperTriangle.Rd,
- trunk/gmodels/man/fast.prcomp.Rd,
- trunk/gmodels/man/fit.contrast.Rd, trunk/gmodels/man/glh.test.Rd,
- trunk/gmodels/man/make.contrasts.Rd, inst/doc/BalloonPlot.pdf,
- man/balloonplot.Rd, man/bandplot.Rd, man/boxplot.n.Rd,
- man/colorpanel.Rd, man/hist2d.Rd, man/ooplot.Rd, man/overplot.Rd,
- man/plot.lm2.Rd, man/plotCI.Rd, man/plotmeans.Rd,
- man/residplot.Rd, man/sinkplot.Rd, man/smartlegend.Rd,
- man/space.Rd, man/textplot.Rd, man/wapply.Rd,
- trunk/gregmisc/DESCRIPTION,
- trunk/gregmisc/gregmisc/DESCRIPTION.standalone,
- trunk/gregmisc/inst/doc/gregmisc.tex,
- trunk/gtools/man/addLast.Rd, trunk/gtools/man/assert.Rd,
- trunk/gtools/man/capture.Rd, trunk/gtools/man/combinations.Rd,
- trunk/gtools/man/defmacro.Rd, trunk/gtools/man/dirichlet.Rd,
- trunk/gtools/man/foldchange.Rd, trunk/gtools/man/invalid.Rd,
- trunk/gtools/man/logit.Rd, trunk/gtools/man/mixedsort.Rd,
- trunk/gtools/man/oddeven.Rd, trunk/gtools/man/permute.Rd,
- trunk/gtools/man/quantcut.Rd, trunk/gtools/man/running.Rd,
- trunk/gtools/man/scat.Rd, trunk/gtools/man/setTCPNoDelay.Rd,
- trunk/nws/DESCRIPTION, trunk/qvalue/DESCRIPTION,
- trunk/qvalue/man/print.qvalue.Rd, trunk/ssize/DESCRIPTION,
- trunk/ssize/man/pow.Rd: Update my email address
-
-2006-06-26 21:08 nj7w
-
- * R/heatmap.2.R: Fixed a bug which displayed warnings when Rowv and
- Colv were specified as dendrograms
-
-2006-03-10 17:24 warnes
-
- * tests/heatmap2Test.R: Remove code that added a local path
-
-2006-03-09 22:53 nj7w
-
- * tests/heatmap2Test.R, tests/heatmap2Test.Rout.save: Added the
- correct library path where gplots is installed locally and
- corresponding .save file
-
-2006-03-09 22:40 nj7w
-
- * tests/heatmap2Test.R: Updated the tests file
-
-2006-03-09 22:39 nj7w
-
- * R/heatmap.2.R: Removed the condition Colv != Rowv as it has
- already been taken care of
-
-2006-03-09 22:17 nj7w
-
- * rtPCR.rda: Deleted rtPCR.rda from the main directory
-
-2006-03-09 22:09 nj7w
-
- * ChangeLog: Added ChangeLog
-
-2006-03-07 18:18 nj7w
-
- * DESCRIPTION, NEWS: Updated ChangeLog and NEWS
-
-2006-03-07 18:10 nj7w
-
- * tests, tests/heatmap2Test.R, tests/heatmap2Test.Rout.save: Added
- the tests and fixed corrupted files
-
-2006-03-07 16:22 nj7w
-
- * data/rtPCR.rda: Replaced the corrupted rtPCR.rda file in data
- directory
-
-2006-03-07 16:14 nj7w
-
- * tests: Removed the corrputed tests directory
-
-2006-03-07 16:12 nj7w
-
- * data/rtPCR.rda, rtPCR.rda: Replaced the corrupted rtPCR.rda file
- in data directory
-
-2006-03-03 21:03 nj7w
-
- * R/heatmap.2.R, man/heatmap.2.Rd: Updated the code and man page to
- make sure the Rowv and Colv values are properly handled
-
-2006-03-02 21:43 warnes
-
- * R/balloonplot.R: Adjust row total placement to adjust for width
- of the totals
-
-2006-03-02 21:26 warnes
-
- * DESCRIPTION, R/balloonplot.R, man/1: Row totals in ballonplot
- were in reverse order. Fixed.
-
-2006-02-23 22:00 nj7w
-
- * R/heatmap.2.R, tests/heatmap2Test.R: Add ability to scale the
- color key using the new 'keysize' argument.
-
-2006-02-23 21:34 nj7w
-
- * tests, tests/heatmap2Test.R, tests/heatmap2Test.Rout.save: Add
- tests for heatmap.2
-
-2006-02-23 21:25 nj7w
-
- * inst/doc/Figure1.eps, inst/doc/Table.eps, inst/doc/bka.bst,
- inst/doc/heatmap2.R, inst/doc/heatmap2.tex,
- inst/doc/regression_rank_image.Rda,
- inst/doc/regression_rank_image_II.Rda: Move heatmap and
- ballonplot paper source materials to their respective cvs modules
-
-2006-02-23 21:20 nj7w
-
- * inst/doc/BalloonPlot.R, inst/doc/BalloonPlot.tex,
- inst/doc/Figure1.pdf, inst/doc/Figure2.pdf, inst/doc/Figure3.pdf,
- inst/doc/Figure4.pdf, inst/doc/Rnews.sty,
- inst/doc/SurvivedPop.pdf, inst/doc/SurvivedPopWhite.pdf,
- inst/doc/SurvivedProp.pdf, inst/doc/TotalPop.pdf: Moved
- balloonplot paper materials to BallonPlotPaper cvs module
-
-2006-02-23 21:18 nj7w
-
- * inst/doc/colSeparator.pdf, inst/doc/logData.pdf,
- inst/doc/logDataColDendrogram.pdf, inst/doc/logDataColOrd.pdf,
- inst/doc/logDataColOrdNo.pdf, inst/doc/logDataRowDendrogram.pdf,
- inst/doc/origScale.pdf, inst/doc/rowSeparator.pdf,
- inst/doc/scaled.pdf: Remove heatmap paper files and move them to
- the HeatmapPaper cvs module.
-
-2006-02-23 19:57 nj7w
-
- * inst/doc/colSeparator.pdf, inst/doc/logData.pdf,
- inst/doc/logDataColDendrogram.pdf, inst/doc/logDataColOrd.pdf,
- inst/doc/logDataColOrdNo.pdf, inst/doc/logDataRowDendrogram.pdf,
- inst/doc/origScale.pdf, inst/doc/rowSeparator.pdf,
- inst/doc/scaled.pdf: Added figures for heatmap2 paper
-
-2006-02-23 19:54 nj7w
-
- * inst/doc/regression_rank_image.Rda,
- inst/doc/regression_rank_image_II.Rda: Added the .Rda files for
- the heatmap2 paper
-
-2006-02-23 19:52 nj7w
-
- * inst/doc/heatmap2.tex: Added the source - (tex file) of the
- heatmap paper
-
-2006-02-23 19:51 nj7w
-
- * inst/doc/heatmap2.R: Added the code for the figures of heatmap
- paper
-
-2006-02-21 22:19 nj7w
-
- * R/heatmap.2.R, man/heatmap.2.Rd: Minor updates to heatmap.2 -
- fixed Rowv, Colv and dendrogram behaviour. Now Rowv=NULL or FALSE
- both imply no dendrogram computation.
-
-2006-01-12 23:10 warnes
-
- * inst/doc/BalloonPlot.R, inst/doc/BalloonPlot.pdf,
- inst/doc/BalloonPlot.tex, inst/doc/Figure1.pdf,
- inst/doc/Figure2.pdf, inst/doc/Figure3.pdf, inst/doc/Figure4.pdf:
- more updates
-
-2006-01-12 23:01 warnes
-
- * inst/doc/bka.bst: Add Biometrica bibliography style file
-
-2006-01-12 22:34 warnes
-
- * inst/doc/BalloonPlot.tex: A little more.
-
-2006-01-12 22:32 warnes
-
- * inst/doc/BalloonPlot.tex: Updates to respond to referee.
-
-2006-01-12 19:59 nj7w
-
- * inst/doc/BalloonPlot.tex: Added references
-
-2005-12-13 17:01 nj7w
-
- * inst/doc/BalloonPlot.tex: Fixed Nitin's company name
-
-2005-12-13 16:18 nj7w
-
- * ChangeLog, NEWS, trunk/gtools/NEWS: Updated NEWS and removed
- ChangeLog
-
-2005-12-12 22:20 nj7w
-
- * R/plotmeans.R: Fixed bug in plotmeans - based on Stefano Calza's
- suggestion
-
-2005-12-07 18:52 nj7w
-
- * DESCRIPTION: Updated version number
-
-2005-12-07 18:50 nj7w
-
- * NAMESPACE, R/plot.lm.R, man/plot.lm2.Rd: Added plot.lm
-
-2005-12-07 18:48 nj7w
-
- * man/barplot2.Rd: Changed the default grey colors to heat colors,
- if height is matrix
-
-2005-12-07 18:48 nj7w
-
- * R/barplot2.R: Changed the default greay colors to heat colors, if
- height is matrix
-
-2005-12-06 22:41 nj7w
-
- * man/barplot2.Rd: Fixed minor error in documentation of barplot2
-
-2005-12-02 21:11 warnes
-
- * R/plot.lm.R: Remove .Alias calls, since .Alias is defunct.
-
-2005-12-01 16:54 nj7w
-
- * trunk/gmodels/man/ci.Rd, trunk/gmodels/man/coefFrame.Rd,
- trunk/gmodels/man/estimable.Rd,
- trunk/gmodels/man/fit.contrast.Rd,
- trunk/gmodels/man/make.contrasts.Rd, man/balloonplot.Rd,
- man/bandplot.Rd, man/boxplot.n.Rd, man/colorpanel.Rd,
- man/overplot.Rd, man/plotmeans.Rd, man/textplot.Rd,
- man/wapply.Rd, trunk/gtools/man/combinations.Rd,
- trunk/gtools/man/foldchange.Rd, trunk/gtools/man/invalid.Rd,
- trunk/gtools/man/logit.Rd, trunk/gtools/man/mixedsort.Rd,
- trunk/gtools/man/oddeven.Rd, trunk/gtools/man/quantcut.Rd,
- trunk/gtools/man/running.Rd: Updated Greg's email address
-
-2005-11-23 22:05 nj7w
-
- * inst/doc/BalloonPlot.R, inst/doc/BalloonPlot.pdf,
- inst/doc/BalloonPlot.tex, inst/doc/Figure2.pdf: Updated Figure 2
- colors
-
-2005-11-18 20:40 warnes
-
- * inst/doc/BalloonPlot.pdf, inst/doc/Figure1.pdf,
- inst/doc/Figure2.pdf, inst/doc/Figure3.pdf, inst/doc/Figure4.pdf:
- Latest version of the pdf files
-
-2005-11-18 20:37 warnes
-
- * inst/doc/BalloonPlot.tex: Nitin works for the Cambrige Group, not
- Pfizer.
-
-2005-11-18 20:34 warnes
-
- * inst/doc/BalloonPlot.tex: Minor text rewording.
-
-2005-11-18 20:31 warnes
-
- * inst/doc/BalloonPlot.R, inst/doc/BalloonPlot.tex: More edits.
-
-2005-11-18 19:50 warnes
-
- * R/balloonplot.R: Recent changes to align row totals with the
- overall total broke how
- the marginal cumulative fractions were displayed. This patch
- fixes
- the problem.
-
-2005-11-18 01:17 warnes
-
- * DESCRIPTION, R/balloonplot.R, R/plot.lm.R,
- inst/doc/BalloonPlot.pdf, man/balloonplot.Rd: - Update
- documentation for balloonplot to match the latest code.
- - Correct spelling of 'show.zeroes' to 'show.zeros'
-
-2005-11-18 00:16 warnes
-
- * R/colorpanel.R: More changes: colorpanel now allows only 2 colors
- to be specified if
- no 'middle' color is desired.
-
-2005-11-17 22:08 warnes
-
- * R/balloonplot.R: Allow user to control removal of duplicate
- entries in balloonplot.
-
-2005-11-17 22:06 warnes
-
- * R/colorpanel.R, man/colorpanel.Rd: Extend colorpanel to handle
- just two-colors in addition to three.
-
-2005-11-09 22:39 nj7w
-
- * inst/doc/BalloonPlot.pdf: Updated the pdf file
-
-2005-11-09 22:38 nj7w
-
- * inst/doc/BalloonPlot.R, inst/doc/BalloonPlot.tex: Updated the
- changes
-
-2005-11-09 22:29 nj7w
-
- * inst/doc/Figure4.pdf: Modified figure 4
-
-2005-11-09 22:29 nj7w
-
- * inst/doc/BalloonPlot.R: Updated code
-
-2005-11-09 22:20 nj7w
-
- * inst/doc/Figure3.pdf: Modified figure 3
-
-2005-11-09 22:20 nj7w
-
- * inst/doc/Figure2.pdf: Modified figure 2
-
-2005-11-09 22:19 nj7w
-
- * inst/doc/Figure1.pdf: Modified figure 1
-
-2005-11-08 16:19 nj7w
-
- * man/plotCI.Rd: Updated Greg's email
-
-2005-11-07 16:58 nj7w
-
- * inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex: Minor
- modifications to fit the code properly on pdf
-
-2005-11-07 14:22 warnes
-
- * inst/doc/BalloonPlot.R: Add R code that generates plots
-
-2005-11-07 14:18 warnes
-
- * inst/doc/Figure2.pdf, inst/doc/Figure3.pdf, inst/doc/Figure4.pdf:
- Add figures to CVS
-
-2005-11-07 14:18 warnes
-
- * inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex,
- inst/doc/Figure1.pdf: Text changes
-
-2005-11-04 21:48 warnes
-
- * R/balloonplot.R: Fix some alignment issues.
-
-2005-11-04 19:05 warnes
-
- * inst/doc/BalloonPlot.pdf, inst/doc/Table.pdf: Remove Table.pdf
- since it is no longer needed
-
-2005-11-04 19:04 warnes
-
- * inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex,
- inst/doc/Figure1.pdf: Nitin's Changes
-
-2005-11-04 19:00 warnes
-
- * inst/doc/SurvivedPop.pdf, inst/doc/SurvivedPopWhite.pdf,
- inst/doc/SurvivedProp.pdf, inst/doc/TotalPop.pdf: Add figure
- plots
-
-2005-11-04 18:59 warnes
-
- * inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex: Fix paths
-
-2005-10-20 18:36 nj7w
-
- * inst/doc/Figure1.eps, inst/doc/Table.eps: added the eps version
- of figures
-
-2005-10-20 18:35 nj7w
-
- * inst/doc/BalloonPlot.pdf: Updated BallonPlot.pdf
-
-2005-10-20 18:34 nj7w
-
- * inst/doc/SurvivedPop.pdf, inst/doc/SurvivedPopWhite.pdf,
- inst/doc/SurvivedProp.pdf, inst/doc/TotalPop.pdf: Removed Old
- Figure
-
-2005-10-20 18:31 nj7w
-
- * inst/doc/Figure1.pdf, inst/doc/Table.pdf: Added the new figure -
- for total popluation - Balloonplot
-
-2005-10-20 18:29 nj7w
-
- * inst/doc/BalloonPlot.tex: Modified the BallonPlot article
-
-2005-10-20 14:12 nj7w
-
- * inst/doc/BalloonPlot.tex: Added references
-
-2005-10-19 16:57 arnima
-
- * man/rich.color.Rd: The last example now displays the correct
- heat.colors.
- Default 'palette' argument is now a single string, not a vector.
-
-2005-10-19 16:56 arnima
-
- * R/rich.color.R: Default 'palette' argument is now a single
- string, not a vector.
-
-2005-10-14 19:13 warnes
-
- * DESCRIPTION, R/balloonplot.R, man/balloonplot.Rd: Formatting
- fixes:
- - Handle multiple row or column category variables
- - Separate rows/columns of category labels by lines
- - Fix handling of 'cumsum' plots on row/column labels
- - Improve display of row/column sums
-
-2005-10-13 20:00 warnes
-
- * man/balloonplot.Rd: Add example using Titanic data that exercises
- the multi-factor
- display.
-
-2005-10-11 21:20 warnes
-
- * R/balloonplot.R: Initial changes to allow multiple x and y factor
- variables. Yet to
- be done: 1) remove extra 'boxes'. 2) omit duplicated values
-
-2005-10-04 19:39 warnes
-
- * inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex: more minor
- fixes
-
-2005-10-04 19:29 warnes
-
- * inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex: fix spacing
-
-2005-10-04 19:08 warnes
-
- * inst/doc/Rnews.sty: Inlcude Rnews.sty
-
-2005-10-04 19:07 warnes
-
- * inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex: Some textual
- edits.
-
-2005-10-03 16:23 nj7w
-
- * inst/doc/SurvivedPop.pdf, inst/doc/SurvivedPopWhite.pdf,
- inst/doc/SurvivedProp.pdf, inst/doc/TotalPop.pdf: Added figures
- for the R-News Article
-
-2005-09-29 21:02 nj7w
-
- * inst/doc/BalloonPlot.pdf, inst/doc/BalloonPlot.tex: Updated the
- documentation - added the name of the person who asked the
- question
-
-2005-09-29 20:29 nj7w
-
- * inst, inst/doc, inst/doc/BalloonPlot.pdf,
- inst/doc/BalloonPlot.tex: Added R-news article
-
-2005-09-12 15:44 nj7w
-
- * trunk/gdata/man/aggregate.table.Rd,
- trunk/gdata/man/interleave.Rd, trunk/gdata/man/matchcols.Rd,
- trunk/gdata/man/nobs.Rd, trunk/gdata/man/read.xls.Rd,
- trunk/gdata/man/rename.vars.Rd, trunk/gdata/man/trim.Rd,
- trunk/gdata/man/unmatrix.Rd, trunk/gmodels/man/fast.prcomp.Rd,
- trunk/gmodels/man/glh.test.Rd, man/hist2d.Rd, man/ooplot.Rd,
- man/residplot.Rd, man/sinkplot.Rd, man/smartlegend.Rd,
- man/space.Rd, trunk/gtools/man/assert.Rd,
- trunk/gtools/man/dirichlet.Rd, trunk/gtools/man/permute.Rd,
- trunk/gtools/man/scat.Rd: Updated Greg's email
-
-2005-09-12 14:45 nj7w
-
- * R/balloonplot.R: Updated version of balloonplot - by Romain
- Francois <fra...@fr...>
-
-2005-09-09 20:34 nj7w
-
- * ChangeLog, DESCRIPTION: Updated the version and ChangeLog
-
-2005-09-09 20:32 nj7w
-
- * R/balloonplot.R, man/balloonplot.Rd: Changes in ballon plot based
- on Romain Francois (fra...@fr...) suggestions
-
-2005-09-06 21:41 nj7w
-
- * DESCRIPTION: Updated package dependencies
-
-2005-09-06 21:41 nj7w
-
- * NEWS: Added NEWS
-
-2005-09-02 23:10 nj7w
-
- * trunk/gmodels/ChangeLog, ChangeLog: Added ChangeLog
-
-2005-08-31 16:28 nj7w
-
- * trunk/gdata/DESCRIPTION, trunk/gmodels/DESCRIPTION, DESCRIPTION:
- Added DESCRIPTION file
-
-2005-08-31 16:27 nj7w
-
- * trunk/gdata/DESCRIPTION.in, trunk/gmodels/DESCRIPTION.in,
- DESCRIPTION.in: removed DESCRIPTION.in
-
-2005-06-09 14:20 nj7w
-
- * trunk/gdata/R/Args.R, trunk/gdata/R/aggregate.table.R,
- trunk/gdata/R/combine.R, trunk/gdata/R/elem.R,
- trunk/gdata/R/env.R, trunk/gdata/R/frameApply.R,
- trunk/gdata/R/interleave.R, trunk/gdata/R/is.what.R,
- trunk/gdata/R/keep.R, trunk/gdata/R/ll.R,
- trunk/gdata/R/matchcols.R, trunk/gdata/R/nobs.R,
- trunk/gdata/R/read.xls.R, trunk/gdata/R/rename.vars.R,
- trunk/gdata/R/reorder.R, trunk/gdata/R/trim.R,
- trunk/gdata/R/unmatrix.R, trunk/gdata/inst/perl/IO/AtomicFile.pm,
- trunk/gdata/inst/perl/IO/InnerFile.pm,
- trunk/gdata/inst/perl/IO/Lines.pm,
- trunk/gdata/inst/perl/IO/Scalar.pm,
- trunk/gdata/inst/perl/IO/Scalar.pm.html,
- trunk/gdata/inst/perl/IO/ScalarArray.pm,
- trunk/gdata/inst/perl/IO/Stringy.pm,
- trunk/gdata/inst/perl/IO/Wrap.pm,
- trunk/gdata/inst/perl/IO/WrapTie.pm,
- trunk/gdata/man/aggregate.table.Rd, trunk/gdata/man/combine.Rd,
- trunk/gdata/man/drop.levels.Rd, trunk/gdata/man/interleave.Rd,
- trunk/gdata/man/nobs.Rd, trunk/gdata/man/rename.vars.Rd,
- trunk/gdata/man/reorder.Rd, trunk/gmodels/R/ci.R,
- trunk/gmodels/R/coefFrame.R, trunk/gmodels/R/estimable.R,
- trunk/gmodels/R/fast.prcomp.R, trunk/gmodels/R/fit.contrast.R,
- trunk/gmodels/R/glh.test.R, trunk/gmodels/R/make.contrasts.R,
- trunk/gmodels/man/CrossTable.Rd, trunk/gmodels/man/ci.Rd,
- trunk/gmodels/man/coefFrame.Rd, trunk/gmodels/man/estimable.Rd,
- trunk/gmodels/man/fast.prcomp.Rd,
- trunk/gmodels/man/fit.contrast.Rd, trunk/gmodels/man/glh.test.Rd,
- trunk/gmodels/man/make.contrasts.Rd, R/balloonplot.R,
- R/bandplot.R, R/boxplot.n.R, R/colorpanel.R, R/heatmap.2.R,
- R/hist2d.R, R/lowess.R, R/ooplot.R, R/overplot.R, R/plotCI.R,
- R/plotmeans.R, R/qqnorm.aov.R, R/residplot.R, R/rich.color.R,
- R/sinkplot.R, R/smartlegend.R, R/space.R, R/textplot.R,
- R/wapply.R, man/1, man/bandplot.Rd, man/barplot2.Rd,
- man/boxplot.n.Rd, man/hist2d.Rd, man/lowess.Rd, man/plotCI.Rd,
- man/plotmeans.Rd, man/residplot.Rd, man/space.Rd, man/wapply.Rd,
- trunk/gtools/R/RSCompat.S, trunk/gtools/R/combinations.R,
- trunk/gtools/R/dirichlet.R, trunk/gtools/R/foldchange.R,
- trunk/gtools/R/invalid.R, trunk/gtools/R/logit.R,
- trunk/gtools/R/mixedsort.R, trunk/gtools/R/oddeven.R,
- trunk/gtools/R/permute.R, trunk/gtools/R/quantcut.R,
- trunk/gtools/R/running.R, trunk/gtools/R/scat.R,
- trunk/gtools/man/ELISA.Rd, trunk/gtools/man/combinations.Rd,
- trunk/gtools/man/dirichlet.Rd, trunk/gtools/man/foldchange.Rd,
- trunk/gtools/man/invalid.Rd, trunk/gtools/man/logit.Rd,
- trunk/gtools/man/mixedsort.Rd, trunk/gtools/man/oddeven.Rd,
- trunk/gtools/man/permute.Rd, trunk/gtools/man/quantcut.Rd,
- trunk/gtools/man/running.Rd, trunk/gtools/man/scat.Rd: Updating
- the version number, and various help files to synchronize
- splitting of gregmisc bundle in 4 individual components.
-
-2005-06-09 14:15 nj7w
-
- * R/barplot2.R: Changes based on Marc Schwartz's suggestions to
- handel 0's and NA's appropriately.
-
-2005-05-13 18:59 nj7w
-
- * trunk/gdata/R/read.xls.R, trunk/gmodels/man/CrossTable.Rd,
- man/heatmap.2.Rd: 1) Using dQuote.ascii function in read.xls as
- the new version of dQuote doesn't work proprly with UTF-8 locale.
- 2) Modified CrossTable.Rd usage in gmodels
- 3) Modified heatmap.2 usage in gplots.
-
-2005-04-04 14:23 warnes
-
- * R/overplot.R: Explicitly reference package containing
- lowess.formula in
- panel.overplot(). This should fix the error reported by Troels
- Ring
- <tr...@gv...>.
-
-2005-02-26 01:15 nj7w
-
- * trunk/gdata/NAMESPACE, trunk/gdata/man/elem.Rd,
- trunk/gdata/man/env.Rd, trunk/gdata/man/ll.Rd,
- trunk/gdata/man/read.xls.Rd, R/heatmap.2.R, man/heatmap.2.Rd,
- man/rich.color.Rd, man/sinkplot.Rd, man/textplot.Rd: *** empty
- log message ***
-
-2005-02-25 23:22 warnes
-
- * trunk/gdata/R/elem.R, trunk/gdata/R/env.R, trunk/gdata/R/ll.R,
- trunk/gdata/man/Args.Rd, trunk/gdata/man/env.Rd,
- trunk/gdata/man/ll.Rd, man/rich.color.Rd: Integrate changes
- submitted by Arni Magnusson
-
-2005-02-25 22:31 warnes
-
- * NAMESPACE: Add dependency imports from 'stats' package.
-
-2005-02-22 21:01 warnes
-
- * R/bandplot.R: Fix problem in passing graphical parameters
- (xlim,etc).@
-
-2005-02-08 16:41 warnes
-
- * DESCRIPTION.in: Improve package title.
-
-2005-02-08 16:40 warnes
-
- * R/heatmap.2.R: Ignore missing values when computing symmetric
- range.
-
-2005-02-02 19:25 warnes
-
- * man/plotmeans.Rd: Add more extensive example.
-
-2005-01-14 19:05 warnes
-
- * R/textplot.R: Code can be simplified because R now supports
- selecting a fixed width font.
-
-2005-01-12 20:50 warnes
-
- * trunk/gdata/DESCRIPTION.in, trunk/gmodels/DESCRIPTION.in,
- DESCRIPTION.in, trunk/gtools/DESCRIPTION.in: Add dependency on R
- 1.9.0+ to prevent poeple from installing on old
- versions of R which don't support namespaces.
-
-2004-11-30 01:06 warnes
-
- * R/heatmap.2.R, man/heatmap.2.Rd: 1. Add new parameters for
- controlling color key:
- - If `symkey==TRUE', the color key will be made symmetric about
- 0.
- - The `densadj' parameter can be used to modify the smoother
- width
- (see the `adjust' parameter under `help(density)') for the
- density
- plotted in the key.
-
- 2. Fix handling of rowsep/colsep.
-
- 3. Vector of length 2 giving the width (colsep) or height
- (rowsep) the separator box
- drawn by colsep and rowsep as a function of the width (colsep) or
- height (rowsep) of a cell.
-
- 4. Appropriate changes to the corresponding help page, plus some
- minor formatting changes.
-
-2004-11-03 19:43 warnes
-
- * R/heatmap.2.R: Fix bugs in layout of cell notes. They were being
- plotted top down
- rather than bottom up. Further reordering of the x matrix didn't
- also reorder the notes. Both issues should now be resolved.
-
-2004-09-27 21:01 warneg
-
- * trunk/gdata/DESCRIPTION, trunk/gdata/DESCRIPTION.in,
- trunk/gdata/NAMESPACE, trunk/gdata/man/.Rhistory,
- trunk/gmodels/DESCRIPTION, trunk/gmodels/DESCRIPTION.in,
- DESCRIPTION, DESCRIPTION.in, man/sinkplot.Rd, man/textplot.Rd,
- trunk/gregmisc/.Rhistory, trunk/gregmisc/DESCRIPTION,
- trunk/gtools/DESCRIPTION, trunk/gtools/DESCRIPTION.in,
- trunk/gtools/man/running.Rd: Updated to pass R CMD check.
-
-2004-09-03 22:50 warneg
-
- * man/textplot.Rd: Provide explicit package for call to nobs.
-
-2004-09-03 22:50 warneg
-
- * man/heatmap.2.Rd: Fix typos.
-
-2004-09-03 17:27 warneg
-
- * trunk/gdata/DESCRIPTION, trunk/gdata/DESCRIPTION.in,
- trunk/gdata/NAMESPACE, trunk/gdata/R/Args.R,
- trunk/gdata/R/aggregate.table.R, trunk/gdata/R/combine.R,
- trunk/gdata/R/elem.R, trunk/gdata/R/env.R,
- trunk/gdata/R/interleave.R, trunk/gdata/R/is.what.R,
- trunk/gdata/R/keep.R, trunk/gdata/R/ll.R,
- trunk/gdata/R/matchcols.R, trunk/gdata/R/nobs.R,
- trunk/gdata/R/read.xls.R, trunk/gdata/R/rename.vars.R,
- trunk/gdata/R/reorder.R, trunk/gdata/R/trim.R,
- trunk/gdata/man/reorder.Rd, trunk/gmodels/DESCRIPTION,
- trunk/gmodels/NAMESPACE, trunk/gmodels/R/CrossTable.R,
- trunk/gmodels/R/ci.R, trunk/gmodels/R/estimable.R,
- trunk/gmodels/R/fast.prcomp.R, trunk/gmodels/R/fit.contrast.R,
- trunk/gmodels/R/glh.test.R, trunk/gmodels/R/make.contrasts.R,
- trunk/gmodels/man/estimable.Rd,
- trunk/gmodels/man/fit.contrast.Rd, trunk/gmodels/man/glh.test.Rd,
- trunk/gmodels/man/make.contrasts.Rd, DESCRIPTION, NAMESPACE,
- R/balloonplot.R, R/bandplot.R, R/barplot2.R, R/boxplot.n.R,
- R/colorpanel.R, R/heatmap.2.R, R/hist2d.R, R/lowess.R,
- R/ooplot.R, R/overplot.R, R/plotCI.R, R/plotmeans.R,
- R/qqnorm.aov.R, R/residplot.R, R/rich.color.R, R/sinkplot.R,
- R/smartlegend.R, R/space.R, R/textplot.R, R/wapply.R,
- trunk/gtools/DESCRIPTION, trunk/gtools/NAMESPACE,
- trunk/gtools/R/dirichlet.R, trunk/gtools/R/foldchange.R,
- trunk/gtools/R/invalid.R, trunk/gtools/R/mixedsort.R,
- trunk/gtools/R/oddeven.R, trunk/gtools/R/permute.R,
- trunk/gtools/R/quantcut.R, trunk/gtools/R/running.R,
- trunk/gtools/man/running.Rd: initial bundle checkin
-
-2004-09-02 17:14 warneg
-
- * trunk/gdata/DESCRIPTION, trunk/gdata/DESCRIPTION.in,
- trunk/gdata/NAMESPACE, trunk/gdata/man/.Rhistory,
- trunk/gmodels/DESCRIPTION, trunk/gmodels/DESCRIPTION.in,
- trunk/gmodels/NAMESPACE, DESCRIPTION, DESCRIPTION.in, NAMESPACE,
- man/1, man/residplot.Rd, trunk/gregmisc/.Rhistory,
- trunk/gtools/DESCRIPTION, trunk/gtools/DESCRIPTION.in,
- trunk/gtools/NAMESPACE: Initial revision
-
-2004-07-29 14:49 warnes
-
- * R/plotCI.R, man/plotCI.Rd: Integrate changes from the version of
- plotCI maintained by Martin Maechler.
-
-2004-06-30 19:32 warnes
-
- * R/textplot.R: Remove commented-out code.
-
-2004-06-30 19:26 warnes
-
- * R/textplot.R: Fixed text size calculations
-
-2004-06-28 20:16 warnes
-
- * R/barplot2.R, man/barplot2.Rd: - Default 2-d color set to grey as
- in (v2.0.0) r-devel
- - The default (v1.9.1) barplot method now handles vectors and 1-d
- arrays
- (e.g., obtained by table()) the same, and uses grey instead of
- heat color palettes in these cases. (Also fixes PR#6776.)
- - Updated to reflect the addition of 'offset' argument in base
- - Fix bug in stacked barplots, which would not be plotted
- properly
-
-2004-06-24 16:57 warnes
-
- * R/heatmap.2.R, man/heatmap.2.Rd: Add ability to specify color of
- NA cells.
-
-2004-05-27 15:11 warnes
-
- * man/plotCI.Rd: Fix spelling error.
-
-2004-05-26 14:56 warnes
-
- * R/overplot.R: One more fix to get it right.
-
-2004-05-26 13:50 warnes
-
- * R/overplot.R: Use triple-colon operator ':::' to access
- plot.formula from the graphics package.
-
-2004-05-26 13:19 warnes
-
- * man/rich.color.Rd: Replace 'F' by 'FALSE' to pass R CMD check.
-
-2004-05-25 18:32 warnes
-
- * R/overplot.R: Work around bug in R 1.9.X due to plot.formula()
- not having the same
- arguments as plot().
-
-2004-05-25 17:33 warnes
-
- * R/rich.color.R, man/rich.color.Rd: Add rich.colors() submitted by
- Arni Magnusson <arnima@u.washington.edu>.
-
-2004-05-25 02:58 warnes
-
- * R/ooplot.R, man/ooplot.Rd: ??
-
-2004-05-24 23:43 warnes
-
- * R/plotCI.R, R/plotmeans.R: Modified to use invalid() to check
- arguments instead of missing().
- This fixes some build errors under R-1.9.0-Patched.
-
-2004-04-22 15:44 warnes
-
- * R/ooplot.R, man/ooplot.Rd: Integrate changes from Lodewijk
- Bonebakker <bon...@co...>
-
-2004-04-13 13:42 warnes
-
- * R/space.R, man/space.Rd: Add ability to space points along 'y'
- direction.
-
-2004-04-02 19:06 warnes
-
- * R/smartlegend.R: Fixed smartlegend() positioning when x and/or y
- axis are log-scale.
-
-2004-03-30 19:04 warnes
-
- * R/textplot.R, trunk/gregmisc/DESCRIPTION: - Fix bug in textplot()
- reported by Wright, Kevin <kev...@pi...>.
-
-2004-03-26 22:27 warnes
-
- * man/textplot.Rd: Update to match changes in textplot() code.
-
-2004-03-26 22:25 warnes
-
- * man/ooplot.Rd: Remove Windows EOL characters.
-
-2004-03-26 22:20 warnes
-
- * man/barplot2.Rd: - Remove some commented-out code.
- - Remove cvs log tag.
-
-2004-03-26 22:16 warnes
-
- * R/textplot.R: Misc changes.
-
-2004-02-17 22:22 warnes
-
- * man/ooplot.Rd: Minor fix to ooplot documentation.
-
-2004-02-17 22:21 warnes
-
- * R/ooplot.R, man/ooplot.Rd: Integrate ooplot updates provided by
- Lodewijk Bonebakker
- <bon...@co...>
-
-2004-02-02 16:26 warnes
-
- * R/colorpanel.R, man/colorpanel.Rd: - Add colorpanel function,
- which generates a smoothly varying band of
- colors over a three color range (lo, mid, high).
-
-2004-01-21 12:07 warnes
-
- * man/textplot.Rd: - Correct arguments to halign to match code.
-
-2004-01-21 05:17 warnes
-
- * R/lowess.R: Track R 1.9.0's move of 'lowess' from the base
- package to the (new)
- stats package.
-
-2004-01-21 04:44 warnes
-
- * man/sinkplot.Rd: - Fix sinkplot() example by replacing 'T' with
- 'TRUE'.
-
-2004-01-21 04:42 warnes
-
- * man/ooplot.Rd: - Add some more details to the ooplot()
- documentation. The
- documentation is *not* complete.
-
-2004-01-21 04:31 warnes
-
- * R/textplot.R, trunk/gtools/R/capture.R: - Mark sprint() as
- depreciated.
- - Replace references to sprint with capture.output()
- - Use match.arg for halign and valign arguments to
- textplot.default.
- - Fix textplot.character so that a vector of characters is
- properly
- displayed. Previouslt, character vectors were plotted on top of
- each
- other.
-
-2004-01-19 23:43 warnes
-
- * R/sinkplot.R, man/sinkplot.Rd: New function sinkplot(), as
- requested on R-devel by Kevin Wright
- <kw...@es...> in
- https://www.stat.math.ethz.ch/pipermail/r-devel/2004-January/028483.html.
-
-2004-01-15 05:14 warnes
-
- * R/ooplot.R, man/ooplot.Rd: Add initial code and docs for ooplot()
- function submitted by Lodewijk
- Bonebakker <bon...@co...>.
-
-2003-12-03 02:46 warnes
-
- * trunk/gdata/man/elem.Rd, trunk/gdata/man/ll.Rd, man/lowess.Rd,
- man/textplot.Rd, man/wapply.Rd, trunk/gtools/man/foldchange.Rd: -
- match function argument defaults with 'usage'
-
-2003-12-03 02:42 warnes
-
- * R/heatmap.2.R, man/heatmap.2.Rd: - Fix buglets in heatmap
- function
- - Make a slight enhancement to the example code.
-
-2003-12-02 22:49 warnes
-
- * R/heatmap.2.R: Integrated some suggestions from Sean Davis
- <sd...@ma...>.
-
-2003-12-02 18:22 warnes
-
- * man/heatmap.2.Rd: - Make final example use 16 colors instead of
- 8. This looks nicer.
-
-2003-12-02 16:58 warnes
-
- * man/barplot2.Rd: - Remove '%' character from example code to
- avoid errors.
-
-2003-12-02 16:54 warnes
-
- * R/plotCI.R: - Add '...' parameter to call to text to allow user
- to control size/color/etc.
-
-2003-12-01 16:00 warnes
-
- * man/barplot2.Rd: - updated to match changes to barplot() in base.
-
-2003-12-01 15:59 warnes
-
- * data, data/rtPCR.rda: - Renamed rtPCR.Rda to rtPCR.rda so that R
- will properly load the file
- when data(rtPCR) is executed.
-
-2003-12-01 15:55 warnes
-
- * R/barplot2.R: - Follow patches applied to barplot() in base.
-
-2003-11-24 21:32 warnes
-
- * man/heatmap.2.Rd: Fix unbalanced braces.
-
-2003-11-24 15:09 warnes
-
- * R/overplot.R, man/overplot.Rd: Fix errors reported by R CMD
- check.
-
-2003-11-21 23:13 warnes
-
- * man/overplot.Rd: Added missing closing brace.
-
-2003-11-21 23:08 warnes
-
- * man/rtPCR.Rd: Initial addition of these files. Used in examples
- of overplot().
-
-2003-11-21 22:59 warnes
-
- * R/heatmap.2.R, man/heatmap.2.Rd: Applied my enhancements to the
- heatmap() code from R 1.8.0, and added
- documentation of these changes.
-
-2003-11-21 22:58 warnes
-
- * R/overplot.R, man/overplot.Rd: - Discovered that axis(N) does the
- right thing without needing to be
- given location for tick marks. This allowed simplification of the
- code.
-
- - Minor other changes for distribution
-
- - Addition of overplot.Rd documentation.
-
-2003-11-21 19:50 warnes
-
- * R/heatmap.2.R, man/heatmap.2.Rd: - Integrated my extensions into
- the R 1.8.0 version of heatmap.
- - Add Rd documentation.
-
-2003-11-19 14:52 warnes
-
- * man/bandplot.Rd: Remove extranious NULL that confused R CMD
- check.
-
-2003-11-18 18:59 warnes
-
- * man/barplot2.Rd: - Tiny fix to remove R CMD check error.
-
-2003-11-18 18:58 warnes
-
- * man/smartlegend.Rd: - Added missing closing brace.
-
-2003-11-18 18:45 warnes
-
- * trunk/gdata/R/elem.R, trunk/gdata/R/env.R,
- trunk/gdata/R/is.what.R, trunk/gdata/R/keep.R,
- trunk/gdata/R/ll.R, R/overplot.R: - Convert from MS-Dos to Unix
- line endings.
- - Reformat to 80 columns.
-
-2003-11-10 22:11 warnes
-
- * trunk/gdata/R/elem.R, trunk/gdata/R/env.R,
- trunk/gdata/R/is.what.R, trunk/gdata/R/keep.R,
- trunk/gdata/R/ll.R, trunk/gdata/man/elem.Rd,
- trunk/gdata/man/env.Rd, trunk/gdata/man/is.what.Rd,
- trunk/gdata/man/keep.Rd, trunk/gdata/man/ll.Rd, R/heatmap.2.R,
- R/overplot.R, R/plotmeans.R, R/space.R, R/wapply.R,
- trunk/gregmisc/DESCRIPTION, trunk/gtools/R/capture.R,
- trunk/gtools/man/capture.Rd: - Add files contributed by Arni
- Magnusson
- <arnima@u.washington.edu>. As well as some of my own.
-
-2003-08-19 14:58 warnes
-
- * R/heatmap.2.R: - Copy of local changes.
-
-2003-08-19 14:57 warnes
-
- * R/heatmap.2.R: - Checkin before re-integrating local changes.
-
-2003-06-19 21:23 warnes
-
- * R/heatmap.2.R: - Added enhanced heatmap function.
-
-2003-06-09 15:10 warnes
-
- * man/smartlegend.Rd: - Add help text for smartlegend.
-
-2003-06-09 14:57 warnes
-
- * R/smartlegend.R: - New function smartlegend().
-
-2003-04-22 17:28 warnes
-
- * R/plotmeans.R: - Fixeed warning messing caused when 'connect' is
- a vector.
-
-2003-04-22 15:34 warnes
-
- * R/barplot2.R: Update from Marc Schwartz, modified by Gregory
- Warnes:
-
- - Modified dim() checks for 'ci.l' and 'ci.u' against 'height'
- to remove R v1.7.0 if() based error msgs for vector conditions.
-
-2003-04-04 13:49 warnes
-
- * R/balloonplot.R, man/qqnorm.aov.Rd, trunk/gtools/R/dirichlet.R: -
- Change occurences of 'T' to 'TRUE'
-
-2003-04-04 13:44 warnes
-
- * man/textplot.Rd: - Updated to match changes in textplot function:
- - Added textplot.character
- - Renamed arguments "col.margin" and "row.margin" to "cmar", and
- "rmar" so that specifying "col='red'" is possible.
- - Fixed R CMD check errors
- - Improve comments in example
- - Add textplot.matrix example
-
-2003-04-04 13:41 warnes
-
- * R/textplot.R: - Added textplot.character to handle character
- strings.
- - Moved test for vector and matrix arguments to textplot.default.
- - Renamed arguments "col.margin" and "row.margin" to "cmar", and
- "rmar" so that specifying "col='red'" is possible.
-
-2003-04-02 22:29 warnes
-
- * R/textplot.R, man/textplot.Rd: - Added textplot function and
- friends, as well as documentation.
-
-2003-03-08 16:30 warnes
-
- * man/balloonplot.Rd: - Forgot to update arglist in \usage section.
-
-2003-03-08 16:22 warnes
-
- * R/balloonplot.R, man/balloonplot.Rd: - Added parameters for
- rotation of and amount of space allocated for
- the row and column labels.
-
-2003-03-07 15:48 warnes
-
- * trunk/gmodels/R/fast.prcomp.R, R/hist2d.R, R/qqnorm.aov.R,
- trunk/gregmisc/DESCRIPTION, trunk/gtools/R/RSCompat.S: - Minor
- changes to code to allow the package to be provided as an
- S-Plus chapter.
-
-2003-03-07 15:43 warnes
-
- * R/lowess.R: - Add 'NULL' as the last element of if statement that
- defines
- lowess.default so that when the file is sourced, S-Plus doesn't
- display the function definition.
-
-2003-03-07 15:41 warnes
-
- * R/lowess.R: - Specify where the defualt lowess function should be
- found.
- - Use getFunction in S-Plus instead of 'get'
-
-2003-01-30 21:43 warnes
-
- * R/barplot2.R, man/barplot2.Rd: - Added argument 'add' to allow
- for the addition of a barplot to an
- existing graphic. Default is FALSE
-
-2003-01-20 18:35 warnes
-
- * R/balloonplot.R, man/balloonplot.Rd: - Updated balloonplot help
- page.
-
-2003-01-20 17:13 warnes
-
- * R/wapply.R, man/wapply.Rd: - Updated wapply.R to allow
- specification of evaluation points when
- method is 'width' or 'range' using the 'pts' argument.
- - Updated wapply.Rd to add 'pts' argument
- - Fixed typos, spelling errors, gramatical errors and lack of
- clarity
- in wapply.Rd help text.
-
-2003-01-03 21:34 warnes
-
- * R/balloonplot.R, man/balloonplot.Rd: - Initial checkin of
- balloonplot functions and documentation.
-
-2003-01-03 19:23 warnes
-
- * man/space.Rd: - Added reference to and comparison example of
- sunflowerplot.
- - Added code to put example plots on same plot window using
- par(mfrow=...).
-
-2003-01-02 16:09 warnes
-
- * R/barplot2.R: - Changed assignment statements that used "=" to
- "<-" to avoid syntax
- errors in older versions of the S language.
-
-2003-01-02 16:07 warnes
-
- * R/lowess.R: - Added wrapper code so that R-specific fiddling
- won't be executed
- under S-Plus.
-
-2003-01-02 15:40 warnes
-
- * R/qqnorm.aov.R, man/qqnorm.aov.Rd: - Renamed first parameter to
- match qqnorm generic.
-
-2003-01-02 15:14 warnes
-
- * man/qqnorm.aov.Rd: Added additional help text from Kjeitl.
-
-2002-12-31 19:50 warnes
-
- * R/qqnorm.aov.R, man/qqnorm.aov.Rd: Initial checkin of qqnorm.aov
- function and documentation submitted by
- Kjetil Halvorsen <kj...@ju...>.
-
-2002-11-04 14:21 warnes
-
- * R/barplot2.R, man/barplot2.Rd: Updates from Marc Schwartz:
-
- - Updated underlying code to be based upon the new barplot() in R
- v1.6.1
- - This now uses the 'axis.lty' and 'border' arguments
- - In R v1.6.0, R Core introduced a new function called axTicks().
- This is an R equivalent of the C code for CreateAtVector in
- plot.c.
- This now enables me to get the axis tick mark positions
- consistently
- when the 'height' related axis is either linear or log. Thus, I
- can
- now have consistent tick marks and can plot grid lines in either
- situation. If 'plot.grid = TRUE' and 'grid.inc' is specified,
- then
- I still use pretty() to determine the tick marks and lines.
- - This code now depends on R 1.6.0 or later.
-
-2002-10-30 02:21 warnes
-
- * R/plot.lm.R: - Commented out plot.lm() code since recent changes
- in R have broken it.
-
-2002-10-11 18:02 warnes
-
- * R/barplot2.R: - Fixed log scale errors in legend() call
-
-2002-10-01 18:16 warnes
-
- * man/hist2d.Rd: - Added examples of using 'contour' and
- 'filled.contour' for display.
-
-2002-09-24 14:53 warnes
-
- * R/plotmeans.R: - Changed digits=options("digits") which produces
- a list of length 1
- to digits=getOption("digits") which returns a vector of length
- one.
- The former was causing an error when passed to round().
-
-2002-09-23 14:27 warnes
-
- * trunk/gmodels/man/CrossTable.Rd, trunk/gmodels/man/glh.test.Rd,
- man/barplot2.Rd: - Fixed syntax errors in barplot2.Rd and
- CrossTable.Rd
- - Fixed incorrect translation of 'F' (distribution) to 'FALSE' in
- glh.test.Rd
-
-2002-09-23 13:59 warnes
-
- * trunk/gdata/R/aggregate.table.R, trunk/gdata/R/combine.R,
- trunk/gdata/R/interleave.R, trunk/gdata/R/nobs.R,
- trunk/gdata/man/aggregate.table.Rd, trunk/gdata/man/combine.Rd,
- trunk/gdata/man/interleave.Rd, trunk/gdata/man/nobs.Rd,
- trunk/gdata/man/rename.vars.Rd, trunk/gdata/man/reorder.Rd,
- trunk/gmodels/R/ci.R, trunk/gmodels/man/estimable.Rd,
- trunk/gmodels/man/glh.test.Rd, R/boxplot.n.R, R/hist2d.R,
- R/lowess.R, R/residplot.R, man/bandplot.Rd, man/hist2d.Rd,
- man/lowess.Rd, man/plotCI.Rd, man/space.Rd,
- trunk/gtools/man/combinations.Rd, trunk/gtools/man/quantcut.Rd: -
- Modified all files to include CVS Id and Log tags.
-
-2002-09-23 13:38 warnes
-
- * trunk/gmodels/R/CrossTable.R, trunk/gmodels/man/CrossTable.Rd,
- R/barplot2.R, man/barplot2.Rd, trunk/gregmisc/DESCRIPTION,
- trunk/gtools/R/combinations.R: - Added CrossTable() and
- barplot2() code and docs contributed by Marc Schwartz.
- - Permit combinations() to be used when r>n provided
- repeat.allowed=TRUE
- - Bumped up version number
-
-2002-08-01 19:37 warnes
-
- * trunk/gmodels/R/ci.R, trunk/gmodels/man/ci.Rd,
- trunk/gmodels/man/estimable.Rd, trunk/gmodels/man/glh.test.Rd,
- R/hist2d.R, R/wapply.R, trunk/gregmisc/DESCRIPTION,
- trunk/gtools/R/running.R: - Corrected documentation mismatch for
- ci, ci.default.
-
- - Replaced all occurences of '_' for assignment with '<-'.
-
- - Replaced all occurences of 'T' or 'F' for 'TRUE' and 'FALSE'
- with
- the spelled out version.
-
- - Updaded version number and date.
-
-2002-04-09 00:51 warneg
-
- * trunk/gdata/R/rename.vars.R, trunk/gdata/man/aggregate.table.Rd,
- trunk/gdata/man/interleave.Rd, trunk/gdata/man/reorder.Rd,
- trunk/gmodels/R/ci.R, trunk/gmodels/R/estimable.R,
- trunk/gmodels/R/glh.test.R, trunk/gmodels/man/glh.test.Rd,
- R/bandplot.R, R/boxplot.n.R, R/hist2d.R, R/plot.lm.R, R/plotCI.R,
- R/plotmeans.R, R/residplot.R, R/space.R, R/wapply.R,
- man/bandplot.Rd, man/boxplot.n.Rd, man/hist2d.Rd,
- man/plotmeans.Rd, man/space.Rd, man/wapply.Rd,
- trunk/gregmisc/DESCRIPTION, trunk/gtools/R/combinations.R,
- trunk/gtools/man/combinations.Rd, trunk/gtools/man/running.Rd:
- Checkin for version 0.5.3
-
-2002-03-27 20:51 warneg
-
- * man/lowess.Rd: Added "..." argument to lowess.default.
-
-2002-03-27 19:48 warneg
-
- * R/lowess.R: - Added code to append "..." to the argument list of
- lowess.default.
-
- - Fixed a wrong default for f in lowess.formula. Was 3, but
- should
- have been 2/3.
-
-2002-03-26 21:22 warneg
-
- * trunk/gdata/man/reorder.Rd, trunk/gmodels/R/ci.R,
- trunk/gmodels/R/glh.test.R, trunk/gmodels/man/ci.Rd,
- trunk/gmodels/man/glh.test.Rd, R/lowess.R, man/lowess.Rd: -
- Changed methods to include '...' to match the generic.
- - Updated for version 0.5.1
-
-2002-03-26 19:24 warneg
-
- * man/hist2d.Rd: Initial checkin.
-
-2002-03-20 04:17 warneg
-
- * R/plotmeans.R: - Changes to add compatibility with S-Plus 2000
-
-2002-03-20 04:16 warneg
-
- * R/plotCI.R: - Changes to add compatibility with S-Plus 2000.
-
-2002-03-20 03:48 warneg
-
- * R/boxplot.n.R: - Updated to work in S-Plus 2000 as well as R.
-
-2002-03-05 16:44 warneg
-
- * R/plotmeans.R: - Replace "T" with "TRUE". Problems arrive when
- there is a variable named "T".
-
-2002-02-20 20:09 warneg
-
- * trunk/gdata/man/rename.vars.Rd, trunk/gmodels/man/ci.Rd,
- trunk/gmodels/man/estimable.Rd, trunk/gmodels/man/glh.test.Rd,
- man/lowess.Rd, man/plotCI.Rd, man/space.Rd: Minor changes, typo
- and formatting fixes.
-
-2002-02-20 20:06 warneg
-
- * R/bandplot.R, man/bandplot.Rd: - Generalized to allow
- specification of the multiples of the standard deviation levels
- to be plotted (0=mean, 1=1 sd, ..).
- - Now (invisibly) returnes computed smooths.
-
-2002-02-16 18:16 warneg
-
- * man/bandplot.Rd: Added bandplot documentation.
-
-2002-02-16 17:58 warneg
-
- * R/wapply.R: - Fixed Bug: When method=="range", the absolute range
- of x was being
- used to compute the relative width instead of the (correct)
- relative
- range.
-
-2002-02-16 17:23 warneg
-
- * R/wapply.R: - Corrected problem removing missing values: The
- missing values of $x
- and $y were being removed indepdendently, leaving an uneven
- number
- of points in the result.
-
-2002-02-04 23:20 warneg
-
- * R/space.R: - Add na.rm parameter and make the default TRUE.
-
-2002-02-04 23:19 warneg
-
- * R/hist2d.R: Initial checkin.
-
-2002-02-04 19:12 warneg
-
- * R/plotCI.R: - When err="x", 'col' was being used to plot bars,
- rather than 'barcol'.
-
-2002-02-04 19:09 warneg
-
- * R/plotCI.R: - fixed typo, when err="x", lty was 'slty' causing an
- error.
-
-2001-12-12 01:41 warneg
-
- * man/space.Rd: - Quoted underscore character in my email address.
- - Added correct keyword.
-
-2001-12-12 01:37 warneg
-
- * man/plotmeans.Rd: Added documentation for xaxt parameter.
-
-2001-12-12 01:34 warneg
-
- * R/lowess.R: Updated to explicitly list control arguments to
- lowess.formula.
-
-2001-12-12 01:34 warneg
-
- * man/lowess.Rd: Initial checkin. Code copied from R source package
- and extended.
-
-2001-12-07 23:34 warneg
-
- * man/wapply.Rd: Fixed an problem where \code was incorrectly
- delimited by parens
- rather than curly brackets.
-
-2001-12-07 22:33 warneg
-
- * R/lowess.R, R/plot.lm.R, R/residplot.R, man/space.Rd: Initial
- checkin.
-
-2001-12-07 22:24 warneg
-
- * R/space.R: - Added cvs tags.
-
-2001-12-07 22:23 warneg
-
- * R/space.R: - Leave first point at center, rather than shifting by
- s/2 to the left. This looks better when there are more than 2
- 'spaced' points.
-
-2001-12-05 19:49 warneg
-
- * R/plotmeans.R: - Added ability to use the t-distribution to
- compute confidence
- intervals. This is controlled using the 'use.t' parameter.
-
-2001-12-05 19:41 warneg
-
- * man/plotmeans.Rd: - Added documentation of use.t parameter.
-
-2001-12-05 19:36 warneg
-
- * man/wapply.Rd: - Clarified how the width of the window is
- computed when method="nobs".
-
-2001-12-05 19:29 warneg
-
- * R/wapply.R: - Added a better default for "width" when
- method="nobs". For this case,
- width=max(5, length(x)/10).
-
- - Allow omission of x values which result in missing y values via
- 'drop.na' parameter.
-
-2001-10-26 02:48 warneg
-
- * R/plotmeans.R: Added correct handling of 'xaxt="n"'.
-
-2001-10-16 23:15 warneg
-
- * trunk/gmodels/man/ci.Rd, man/wapply.Rd: Fixed unbalanced brace.
-
-2001-10-16 23:06 warneg
-
- * man/plotCI.Rd: Added minbar and maxbar parameters.
-
-2001-10-16 23:04 warneg
-
- * man/plotmeans.Rd: Forgot to add minbar and maxbar to usage
- section.
-
-2001-10-16 23:03 warneg
-
- * man/plotmeans.Rd: Added description of minbar and maxbar.
-
-2001-10-16 23:00 warneg
-
- * R/plotCI.R: - Added minbar and maxbar parameters
- - Added cvs id and log tags to header
-
-2001-10-16 22:59 warneg
-
- * R/plotmeans.R: Added cvs id and log tag to file header
-
-2001-10-16 22:57 warneg
-
- * R/plotmeans.R: Added minbar and maxbar parameters.
-
-2001-10-16 22:35 warneg
-
- * man/plotmeans.Rd: Added description of minsd parameter.
-
-2001-10-16 22:35 warneg
-
- * R/plotmeans.R: Added minsd parameter.
-
-2001-09-18 14:15 warneg
-
- * R/plotCI.R, R/plotmeans.R, trunk/gregmisc/DESCRIPTION,
- trunk/gtools/R/RSCompat.S: Release 0.3.2
-
-2001-09-01 00:01 warneg
-
- * man/wapply.Rd, trunk/gregmisc/DESCRIPTION,
- trunk/gtools/R/running.R, trunk/gtools/man/running.Rd: Release
- 0.3.0
-
-2001-08-31 23:45 warneg
-
- * R/wapply.R: Used wrong character in header (% instead of #).
- Fixed.
-
-2001-08-31 23:41 warneg
-
- * R/bandplot.R: Used wrong comment character (% instead of #) in
- header. Fixed.
-
-2001-08-25 05:48 warneg
-
- * R/wapply.R: Initial checkin.
-
-2001-08-25 05:46 warneg
-
- * man/boxplot.n.Rd, man/plotmeans.Rd: Added CVS header.
-
-2001-08-25 05:45 warneg
-
- * man/wapply.Rd: Initial Checkin
-
-2001-05-30 13:23 warneg
-
- * trunk/gmodels, trunk/gmodels/R, trunk/gmodels/R/ci.R,
- trunk/gmodels/man, trunk/gmodels/man/ci.Rd, ., R, R/boxplot.n.R,
- R/plotCI.R, R/plotmeans.R, man, man/boxplot.n.Rd, man/plotCI.Rd,
- man/plotmeans.Rd, trunk/gregmisc, trunk/gregmisc/DESCRIPTION:
- Initial revision
-
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