[R-gregmisc-users] SF.net SVN: r-gregmisc: [1091] trunk/PathwayModeling/thesispaper

[<wa...@us...>]

Revision: 1091
          http://svn.sourceforge.net/r-gregmisc/?rev=1091&view=rev
Author:   warnes
Date:     2007-04-17 09:34:50 -0700 (Tue, 17 Apr 2007)

Log Message:
-----------
Add acknowledgement for Robert

Modified Paths:
--------------
    trunk/PathwayModeling/thesispaper/R/plotConverged_nocolor.R
    trunk/PathwayModeling/thesispaper/bibliography.Snw
    trunk/PathwayModeling/thesispaper/figure5.Snw
    trunk/PathwayModeling/thesispaper/paper.Snw
    trunk/PathwayModeling/thesispaper/paper.pdf

Added Paths:
-----------
    trunk/PathwayModeling/thesispaper/acknowledgment.Snw

Modified: trunk/PathwayModeling/thesispaper/R/plotConverged_nocolor.R
===================================================================
--- trunk/PathwayModeling/thesispaper/R/plotConverged_nocolor.R	2007-04-17 15:00:06 UTC (rev 1090)
+++ trunk/PathwayModeling/thesispaper/R/plotConverged_nocolor.R	2007-04-17 16:34:50 UTC (rev 1091)
@@ -1,7 +1,8 @@
 `plotConverged_nocolor` <- function()
 {
     oldpar <- par(no.readonly=TRUE)
-    par(mfrow=c(1,3))
+    #par(mfrow=c(1,3))
+    par(mfrow=c(3,1))
     par(mar=c(4, 3, 0.75, 0.75) + 0.1)
 
     maxY <- 0.0012

Added: trunk/PathwayModeling/thesispaper/acknowledgment.Snw
===================================================================
--- trunk/PathwayModeling/thesispaper/acknowledgment.Snw	                        (rev 0)
+++ trunk/PathwayModeling/thesispaper/acknowledgment.Snw	2007-04-17 16:34:50 UTC (rev 1091)
@@ -0,0 +1,28 @@
+
+\section{Acknowledgment}
+
+Robert "Bing" Burroughs, Ph.D., who was primarily responsible for the
+writing of, and work described by, this manuscript passed away
+unexpectedly on December 27, 2006.  Both of the co-authors are glad to
+have shared a very pleasant and collegial relationship with Dr.
+Burrows and are sad to see him go. We are, however, gratified that
+\emph{IET Systems Biology} has elected to publish Dr. Burrows'
+manuscript posthumously.  With his passing, one of the co-authors, Dr.
+Warnes, has committed to actively continuing his research into
+modeling the biochemistry of diabetic complications.  We cite a
+portion of Dr. Burrows obituary:
+
+\begin{quote}
+  BURROWS, ROBERT BERNARD, II, 63, of North Scituate, died Wednesday,
+  December 27, 2006. He was a long time resident of Lexington, MA
+  before moving to Rhode Island in 2001. After graduating from
+  Lexington High School, Dr. Burrows earned his Bachelor of Arts from
+  Northeastern University, a Ph.D. in Biochemistry from the
+  Massachusetts Institute of Technology, and a Master of Science in
+  Statistics from the University of Rhode Island. He was a
+  self-employed Research Biochemist and previously worked for the
+  Boston Biomedical Research Institute. He leaves his sister Ellen
+  Conner and her husband Donald of Coventry, his dearest friend Sally
+  Glanz of North Scituate and many cousins. \cite{projo}
+\end{quote}
+

Modified: trunk/PathwayModeling/thesispaper/bibliography.Snw
===================================================================
--- trunk/PathwayModeling/thesispaper/bibliography.Snw	2007-04-17 15:00:06 UTC (rev 1090)
+++ trunk/PathwayModeling/thesispaper/bibliography.Snw	2007-04-17 16:34:50 UTC (rev 1091)
@@ -58,4 +58,7 @@
     Byrd, R.H., Lu, P., Nocedal, J., and Zhu, C., 1995, A limited
     memory algorithm for bound constrained optimization, \emph{SIAM J.
     Sci. Comput.}, \textbf{16}, 1190--1208.
+  \bibitem{projo}%16
+    OBITUARIES-SCITUATE-BURROWS. \emph{The Providence Journal/Evening
+      Bulletin} 2006 Dec. 31; Sec. B5
 \end{thebibliography}

Modified: trunk/PathwayModeling/thesispaper/figure5.Snw
===================================================================
--- trunk/PathwayModeling/thesispaper/figure5.Snw	2007-04-17 15:00:06 UTC (rev 1090)
+++ trunk/PathwayModeling/thesispaper/figure5.Snw	2007-04-17 16:34:50 UTC (rev 1091)
@@ -9,13 +9,13 @@
 # pdf(file="figures/tempDir/converged.pdf",width=6,height=6)
 # postscript(file="figures/tempDir/converged.eps",width=6,height=6)
 
-pdf(file="figures/tempDir/converged_nocolor.pdf",width=6,height=2)
+pdf(file="figures/tempDir/converged_nocolor.pdf",width=6,height=6)
 # plotConverged()
 plotConverged_nocolor()
 N <- dev.off()
 
 
-postscript(file="figures/tempDir/converged_nocolor.eps",width=3*6,height=3*2)
+postscript(file="figures/tempDir/converged_nocolor.eps",width=6,height=6)
 # plotConverged()
 plotConverged_nocolor()
 N <- dev.off()

Modified: trunk/PathwayModeling/thesispaper/paper.Snw
===================================================================
--- trunk/PathwayModeling/thesispaper/paper.Snw	2007-04-17 15:00:06 UTC (rev 1090)
+++ trunk/PathwayModeling/thesispaper/paper.Snw	2007-04-17 16:34:50 UTC (rev 1091)
@@ -79,6 +79,8 @@
 
 \SweaveInput{discussion}
 
+\SweaveInput{acknowledgment}
+
 %\bibliography{./refs}
 \SweaveInput{bibliography}
 

Modified: trunk/PathwayModeling/thesispaper/paper.pdf
===================================================================
(Binary files differ)


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