https://sourceforge.net/p/quikr/wiki/Python%2520usage/Recent changes to Python usageenMon, 20 May 2013 15:21:20 -0000https://sourceforge.net/p/quikr/wiki/Python%2520usage/<div class="markdown_content"><pre></pre> </div>David KoslickiMon, 20 May 2013 15:21:20 -0000https://sourceforge.net541e32eb495e244361fd4b7edf7fc732f413017dhttps://sourceforge.net/p/quikr/wiki/Python%2520usage/<div class="markdown_content"><h1 id="python-documentation">Python Documentation</h1> <p>The python version comes with scripts that can be used like the regular quikr<br /> program, and also a module called quikr so integration with python scripts <br /> is easier.</p> <p>If you are switching to use the python scripts instead of the regular, you<br /> will need to regenerate your trained databases with the python version of <br /> quikr_train.</p> <h2 id="function-documentation">Function documentation</h2> <p>If you want to use our quikr module, run help on the module:</p> <div class="codehilite"><pre><span class="o">&gt;&gt;&gt;</span> <span class="n">import</span> <span class="n">quikr</span> <span class="o">&gt;&gt;&gt;</span> <span class="n">help</span><span class="p">(</span><span class="n">quikr</span><span class="p">)</span> </pre></div> <h2 id="python-cannot-find-xyz">Python Cannot Find XYZ</h2> <p>Ensure that you have Python 2.7, Scipy, Numpy, and BIOpython installed <br /> and that python is setup correctly. You should be able to do this from a python<br /> prompt without any errors:<br /> &gt;&gt;&gt; import numpy<br /> &gt;&gt;&gt; import scipy<br /> &gt;&gt;&gt; from Bio import SeqIO</p></div>David KoslickiWed, 15 May 2013 16:48:18 -0000https://sourceforge.net2eed067fcdacdbee4bf9b3d6e2996c5810d9b475