Python usage

Python Documentation

The python version comes with scripts that can be used like the regular quikr
program, and also a module called quikr so integration with python scripts
is easier.

If you are switching to use the python scripts instead of the regular, you
will need to regenerate your trained databases with the python version of
quikr_train.

Function documentation

If you want to use our quikr module, run help on the module:

>>> import quikr
>>> help(quikr)

Python Cannot Find XYZ

Ensure that you have Python 2.7, Scipy, Numpy, and BIOpython installed
and that python is setup correctly. You should be able to do this from a python
prompt without any errors:
>>> import numpy
>>> import scipy
>>> from Bio import SeqIO