Recent changes to Home

Home modified by David Koslicki

David Koslicki — Wed, 17 Jul 2013 16:04:19 -0000

--- v9
+++ v10
@@ -32,8 +32,7 @@
 [http://sourceforge.net/projects/quikr/](sourceforge project page)

 Our development GIT repository is available here:
-
-[http://rosalind.ece.drexel.edu/git/quikr/](rosalind.ece.drexel.edu/git/quikr/)
+[https://github.com/EESI/quikr](https://github.com/EESI/quikr)

 To install quikr, download our project and in the folder run:

Home modified by David Koslicki

David Koslicki — Mon, 20 May 2013 15:20:22 -0000

--- v8
+++ v9
@@ -26,7 +26,7 @@
 We also have a Quikr implementation in Matlab so that you can easily integrate
 Quikr into your custom programs and scripts.

-### Installation ###
+## Installation ##
 Our Quikr code is available on our sourceforge download page:

 [http://sourceforge.net/projects/quikr/](sourceforge project page)

Home modified by David Koslicki

David Koslicki — Wed, 15 May 2013 16:51:34 -0000

--- v7
+++ v8
@@ -47,7 +47,7 @@
     sudo make install_python

-
+### Other wiki pages ###
 [Command line utilities]
 [Matlab usage]
 [Python usage]

Home modified by David Koslicki

David Koslicki — Wed, 15 May 2013 16:50:56 -0000

--- v6
+++ v7
@@ -47,9 +47,11 @@
     sudo make install_python

-[[project_admins]]
-[[download_button]]

 [Command line utilities]
 [Matlab usage]
 [Python usage]
+
+
+[[project_admins]]
+[[download_button]]

Home modified by David Koslicki

David Koslicki — Wed, 15 May 2013 16:50:25 -0000

--- v5
+++ v6
@@ -49,3 +49,7 @@

 [[project_admins]]
 [[download_button]]
+
+[Command line utilities]
+[Matlab usage]
+[Python usage]

Home modified by David Koslicki

David Koslicki — Wed, 15 May 2013 16:45:04 -0000

--- v4
+++ v5
@@ -1,7 +1,3 @@
-[[project_admins]]
-[[download_button]]
-
-
 # How Can I Install The Quikr Utility? #
 To use Quikr there are several prerequisites.

@@ -49,3 +45,7 @@

     make python
     sudo make install_python
+
+
+[[project_admins]]
+[[download_button]]

Home modified by David Koslicki

David Koslicki — Wed, 15 May 2013 16:44:50 -0000

--- v3
+++ v4
@@ -1,10 +1,51 @@
-Welcome to the wiki!
-
-Here you will find more information about downloading and using Quikr.
-
-See [Installation] for information about how to get Quikr.
-
-An example is contained at the page [Example] which details how to use Quikr.
-
 [[project_admins]]
 [[download_button]]
+
+
+# How Can I Install The Quikr Utility? #
+To use Quikr there are several prerequisites. 
+
+## Requirements ##
++ Mac OS X 10.6.8 or GNU/Linux
++ 4Gb of RAM minimum. Absolutely neccessary.
++ gcc that supports OpenMP
+
+### Python Requirements ###
++ Python 2.7
++ Scipy 
++ Numpy
++ BioPython
+
+### Mac Requirements ###
++ Mac OS X 10.6.8 (what we have tested)
++ GCC 4.7 or newer. (gcc 4.2 did not work, and is the default installation)
++ OCaml compiler mlton
++ OpenMP libraries (libgomp, usually comes with gcc)
+
+### Linux Requirements ###
++ GCC 4.7 or newer
++ OCaml compiler mlton
++ OpenMP libraries (libgomp, usually comes with gcc)
+
+We also have a Quikr implementation in Matlab so that you can easily integrate
+Quikr into your custom programs and scripts.
+
+### Installation ###
+Our Quikr code is available on our sourceforge download page:
+
+[http://sourceforge.net/projects/quikr/](sourceforge project page)
+
+Our development GIT repository is available here:
+
+[http://rosalind.ece.drexel.edu/git/quikr/](rosalind.ece.drexel.edu/git/quikr/)
+
+To install quikr, download our project and in the folder run:
+
+    make
+    sudo make install
+
+This will install the quikr, quikr\_train and multifasta\_to\_otu utilities.
+To install the python scripts and module systemwide, run
+
+    make python
+    sudo make install_python

WikiPage Home modified by David Koslicki

David Koslicki — Tue, 18 Dec 2012 17:31:45 -0000

--- v2
+++ v3
@@ -2,7 +2,7 @@

 Here you will find more information about downloading and using Quikr.

-See [Installation] for information about how to get Quikr (or you can just use the [[download_button]].
+See [Installation] for information about how to get Quikr.

 An example is contained at the page [Example] which details how to use Quikr.

WikiPage Home modified by David Koslicki

David Koslicki — Tue, 18 Dec 2012 17:31:30 -0000

--- v1
+++ v2
@@ -1,8 +1,10 @@
-Welcome to your wiki!
+Welcome to the wiki!

-This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].
+Here you will find more information about downloading and using Quikr.

-The wiki uses [Markdown](/p/quikr/wiki/markdown_syntax/) syntax.
+See [Installation] for information about how to get Quikr (or you can just use the [[download_button]].
+
+An example is contained at the page [Example] which details how to use Quikr.

 [[project_admins]]
 [[download_button]]

WikiPage Home modified by David Koslicki

David Koslicki — Mon, 10 Dec 2012 17:56:26 -0000

Welcome to your wiki! This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage]. The wiki uses [Markdown](/p/quikr/wiki/markdown_syntax/) syntax. [[project_admins]] [[download_button]]