Quikr Code
Method for rapid reconstruction (phylotyping) of bacterial communities
Brought to you by:
dkoslicki
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| File | Date | Author | Commit |
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| data | 2013-05-20 |
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[ece998] use n*n*n instead of n*n for nnls, new release ... |
| doc | 2013-05-16 |
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[052355] *Adjusted index.markdown to include: |
| src | 2013-05-20 |
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[ece998] use n*n*n instead of n*n for nnls, new release ... |
| CHANGELOG | 2013-05-20 |
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| Makefile | 2013-05-20 |
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[ece998] use n*n*n instead of n*n for nnls, new release ... |
| README.markdown | 2013-05-20 |
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[ece998] use n*n*n instead of n*n for nnls, new release ... |
Read Me
Quikr
This is the homepage for quikr.
What is Quikr
Quikr is a QUadratic, Iterative, K-mer based Reconstruction technique that
utilizes sparsity promoting ideas from the field of compressed sensing to
reconstruct the composition of a bacterial community (when the input data is
454-like pyrosequencing data). This extremely fast method comes with a several
databases that can be custom trained. Typically reconstruction is
accurate down to the genus level.
How Do I Install Quikr
Please read the directions on the installation page.
How Do I use Quikr
We have several ways to use quikr. Quikr is first and formost a command
line utility, but we also provide python and matlab scripts.
Contact
For issues with the quikr software, contact gailro@gmail.com
Contributors
- David Koslicki
- Simon Foucart
- Gail Rosen
- Calvin Morrison
- Jean-Luc Bouchot
