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From: <m.d...@BG...> - 2007-06-15 09:21:00
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well, im not sure about the very latest mysql version, but mysql is very lazy = when it comes to character encodings and to my knowledge it *doesnt* = support unicode at all. What most people do is encode their data as utf8 = and dump it in mysql as latin1. that causes some confusion sometimes. = for pywrapper I think the utf8 setting would be correct in this case. = have you tried different settings? what happens? and are you sure the = =C3 is not inside your db? pywrapper has only one setting for character encodings, yes, the one you = pointed to. for serious debugging you could try to connect to the db via the = terminal using python interactively. take a look at the dbmod = dmod_mysql.py inside lib/biocase/pywrapper/dbmod (or sth like this) how = to do a connection. just retype the commands in the python shell and see = what you get. markus -----Original Message----- From: pyw...@li... on behalf of Shunde = Zhang Sent: Thu 6/14/2007 2:42 AM To: PyWrapper Developers mailing list Cc:=09 Subject: Re: [PyWrapper-devel] Unicode Hi Markus, The raw XML from your server has the correct value, eg. Punb=E4cken. = However, in my raw XML, this character is shown as "=C3=A4", which is not correct. Could you tell me how you configured it in detail? Did you just set it = in: Home =BB Configtool =BB <datasource> =BB Connection >> Encoding Is there any other place I need to look at? I am using mysql and when I created the database, I didn't set any = character set. so it is using the default one, utf-8. since if I dump the = database, I can see: /*!40101 SET NAMES utf8 */; I think this means my database is using utf8. also I set utf8 in = pywrapper. but it doesn't work. is it possible to debug it? thanks a lot. Cheers, Shunde. Quoting Markus D=F6ring <m.d...@bg...>: > shunde, > pywrapper definitely supports unicode. > you can configure the character encoding for each datasource (the > character encoding used in the database, output should always be > utf8) and it works fine for the training dataset where there are at > least latin1 characters. see here: > > = http://search.biocase.org/tapir/pywrapper?dsa=3Dtraining&op=3Di&c=3Dhttp:= // > rs.tdwg.org/dwc/dwcore/Locality&limit=3D100 > > -- > Markus > > > > On 13.06.2007, at 07:08, Shunde Zhang wrote: > > > Hi all, > > > > Does pywrapper support unicode? I've done a test. In database, my > > value is > > "Universit=E4t". and in the XML returned from pywrapper it becomes > > "Universit=C3=A4t". It seems not correct. Could anybody tell > > me how to > > configure pywrapper to support Unicode? thanks in advance. > > > > Cheers, > > Shunde. > > > > > > > > = ---------------------------------------------------------------------- > > --- > > This SF.net email is sponsored by DB2 Express > > Download DB2 Express C - the FREE version of DB2 express and take > > control of your XML. No limits. Just data. Click to get it now. > > http://sourceforge.net/powerbar/db2/ > > _______________________________________________ > > PyWrapper-devel mailing list > > PyW...@li... > > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > > > = -------------------------------------------------------------------------= > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > -------------------------------------------------------------------------= This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ PyWrapper-devel mailing list PyW...@li... https://lists.sourceforge.net/lists/listinfo/pywrapper-devel |
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From: Shunde Z. <shu...@ad...> - 2007-06-14 00:44:27
|
Hi Markus, I am using cherrypy for testing. could you please tell me how to use production mode? would it be solved if I use apache? thanks again. Cheers, Shunde. Quoting Markus Döring <m.d...@bg...>: > shunde, > are you running pywrapper behind apache via fastcgi or standalone via > cherrypy? if cherrypy, are you using the produciton mode? > -- > Markus > > > > On 13.06.2007, at 02:10, Shunde Zhang wrote: > > > Hi all, > > > > I've written a program using multi-threads to send queries at the > > same time. I > > was working before. Yesterday I put in more records to my database > > (~300000). > > Today I ran my program, I found that it works if I send one only > > query at one > > time. If I sent 2 queries at the same time, it gives me an error. > > > > <!-- CONTENT START --> > > <error xmlns="http://rs.tdwg.org/tapir/1.0" time="2007-06-07 > > 11:13:10.23" > > level="ERROR">Response preparation and data retrieval error</error> > > <!-- CONTENT END --> > > <diagnostics> > > <diagnostic time="2007-06-07T11:13:02.44" level="INFO">Reading > > request</diagnostic> > > <diagnostic time="2007-06-07T11:13:02.49" level="INFO">Read model > > http://rs.tdwg.org/tapir/cs/abcd/2.06/model/abcd206.xml</diagnostic> > > <diagnostic time="2007-06-07T11:13:02.51" level="INFO">Request fully > > parsed</diagnostic> > > <diagnostic time="2007-06-07T11:13:02.51" level="INFO">Get distinct > > records...</diagnostic> > > <diagnostic time="2007-06-07T11:13:02.52" level="INFO">Executing > > SQL: "SELECT > > DISTINCT TaxonName.Genus, TaxonName.Species FROM TaxonName AS > > TaxonName > > ORDER BY TaxonName.Genus, TaxonName.Species LIMIT 21 OFFSET 0"</ > > diagnostic> > > <diagnostic time="2007-06-07T11:13:03.47" level="INFO">Parsed > > response structure > > contains 991 leaf concepts with type out of 1663 nodes in total</diag > > nostic> > > <diagnostic time="2007-06-07T11:13:04.14" level="INFO">Request fully > > parsed</diagnostic> > > <diagnostic time="2007-06-07T11:13:04.15" level="INFO">Init model > > ACBD 2.06 with > > datasource preferences</diagnostic> > > <diagnostic time="2007-06-07T11:13:04.55" level="INFO">Model init > > finished. The > > model contains 1324 mapped concepts for datasource 'avh' out of 1324 m > > odel nodes mapped.</diagnostic> > > <diagnostic time="2007-06-07T11:13:04.55" level="INFO">Update model > > structure > > with datasource preferences</diagnostic> > > <diagnostic time="2007-06-07T11:13:10.17" level="INFO">DB query > > finished</diagnostic> > > <diagnostic time="2007-06-07T11:13:10.17" > > level="ERROR">GENERATING_CONTENT_FAILED</diagnostic> > > <diagnostic time="2007-06-07T11:13:10.23" level="ERROR">Response > > preparation and > > data retrieval error</diagnostic> > > <diagnostic time="2007-06-07T11:13:10.24" > > level="ERROR">GENERATING_CONTENT_FAILED</diagnostic> > > > > Strangely, i sent one inventory and one search, but the errors I > > got are the > > same, which is like doing an inventory query as above. Could you > > please give me > > some idea of how to solve it? thanks a lot. > > > > Cheers, > > Shunde. > > > > > > > > > > ---------------------------------------------------------------------- > > --- > > This SF.net email is sponsored by DB2 Express > > Download DB2 Express C - the FREE version of DB2 express and take > > control of your XML. No limits. Just data. Click to get it now. > > http://sourceforge.net/powerbar/db2/ > > _______________________________________________ > > PyWrapper-devel mailing list > > PyW...@li... > > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > |
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From: Shunde Z. <shu...@ad...> - 2007-06-14 00:41:50
|
Hi Markus, The raw XML from your server has the correct value, eg. Punbäcken. However, in my raw XML, this character is shown as "ä", which is not correct. Could you tell me how you configured it in detail? Did you just set it in: Home » Configtool » <datasource> » Connection >> Encoding Is there any other place I need to look at? I am using mysql and when I created the database, I didn't set any character set. so it is using the default one, utf-8. since if I dump the database, I can see: /*!40101 SET NAMES utf8 */; I think this means my database is using utf8. also I set utf8 in pywrapper. but it doesn't work. is it possible to debug it? thanks a lot. Cheers, Shunde. Quoting Markus Döring <m.d...@bg...>: > shunde, > pywrapper definitely supports unicode. > you can configure the character encoding for each datasource (the > character encoding used in the database, output should always be > utf8) and it works fine for the training dataset where there are at > least latin1 characters. see here: > > http://search.biocase.org/tapir/pywrapper?dsa=training&op=i&c=http:// > rs.tdwg.org/dwc/dwcore/Locality&limit=100 > > -- > Markus > > > > On 13.06.2007, at 07:08, Shunde Zhang wrote: > > > Hi all, > > > > Does pywrapper support unicode? I've done a test. In database, my > > value is > > "Universität". and in the XML returned from pywrapper it becomes > > "Universität". It seems not correct. Could anybody tell > > me how to > > configure pywrapper to support Unicode? thanks in advance. > > > > Cheers, > > Shunde. > > > > > > > > ---------------------------------------------------------------------- > > --- > > This SF.net email is sponsored by DB2 Express > > Download DB2 Express C - the FREE version of DB2 express and take > > control of your XML. No limits. Just data. Click to get it now. > > http://sourceforge.net/powerbar/db2/ > > _______________________________________________ > > PyWrapper-devel mailing list > > PyW...@li... > > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > |
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From: <m.d...@bg...> - 2007-06-13 11:49:50
|
shunde, are you running pywrapper behind apache via fastcgi or standalone via cherrypy? if cherrypy, are you using the produciton mode? -- Markus On 13.06.2007, at 02:10, Shunde Zhang wrote: > Hi all, > > I've written a program using multi-threads to send queries at the > same time. I > was working before. Yesterday I put in more records to my database > (~300000). > Today I ran my program, I found that it works if I send one only > query at one > time. If I sent 2 queries at the same time, it gives me an error. > > <!-- CONTENT START --> > <error xmlns="http://rs.tdwg.org/tapir/1.0" time="2007-06-07 > 11:13:10.23" > level="ERROR">Response preparation and data retrieval error</error> > <!-- CONTENT END --> > <diagnostics> > <diagnostic time="2007-06-07T11:13:02.44" level="INFO">Reading > request</diagnostic> > <diagnostic time="2007-06-07T11:13:02.49" level="INFO">Read model > http://rs.tdwg.org/tapir/cs/abcd/2.06/model/abcd206.xml</diagnostic> > <diagnostic time="2007-06-07T11:13:02.51" level="INFO">Request fully > parsed</diagnostic> > <diagnostic time="2007-06-07T11:13:02.51" level="INFO">Get distinct > records...</diagnostic> > <diagnostic time="2007-06-07T11:13:02.52" level="INFO">Executing > SQL: "SELECT > DISTINCT TaxonName.Genus, TaxonName.Species FROM TaxonName AS > TaxonName > ORDER BY TaxonName.Genus, TaxonName.Species LIMIT 21 OFFSET 0"</ > diagnostic> > <diagnostic time="2007-06-07T11:13:03.47" level="INFO">Parsed > response structure > contains 991 leaf concepts with type out of 1663 nodes in total</diag > nostic> > <diagnostic time="2007-06-07T11:13:04.14" level="INFO">Request fully > parsed</diagnostic> > <diagnostic time="2007-06-07T11:13:04.15" level="INFO">Init model > ACBD 2.06 with > datasource preferences</diagnostic> > <diagnostic time="2007-06-07T11:13:04.55" level="INFO">Model init > finished. The > model contains 1324 mapped concepts for datasource 'avh' out of 1324 m > odel nodes mapped.</diagnostic> > <diagnostic time="2007-06-07T11:13:04.55" level="INFO">Update model > structure > with datasource preferences</diagnostic> > <diagnostic time="2007-06-07T11:13:10.17" level="INFO">DB query > finished</diagnostic> > <diagnostic time="2007-06-07T11:13:10.17" > level="ERROR">GENERATING_CONTENT_FAILED</diagnostic> > <diagnostic time="2007-06-07T11:13:10.23" level="ERROR">Response > preparation and > data retrieval error</diagnostic> > <diagnostic time="2007-06-07T11:13:10.24" > level="ERROR">GENERATING_CONTENT_FAILED</diagnostic> > > Strangely, i sent one inventory and one search, but the errors I > got are the > same, which is like doing an inventory query as above. Could you > please give me > some idea of how to solve it? thanks a lot. > > Cheers, > Shunde. > > > > > ---------------------------------------------------------------------- > --- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel |
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From: <m.d...@bg...> - 2007-06-13 11:49:29
|
shunde, pywrapper definitely supports unicode. you can configure the character encoding for each datasource (the =20 character encoding used in the database, output should always be =20 utf8) and it works fine for the training dataset where there are at =20 least latin1 characters. see here: http://search.biocase.org/tapir/pywrapper?dsa=3Dtraining&op=3Di&c=3Dhttp:/= /=20 rs.tdwg.org/dwc/dwcore/Locality&limit=3D100 -- Markus On 13.06.2007, at 07:08, Shunde Zhang wrote: > Hi all, > > Does pywrapper support unicode? I've done a test. In database, my =20 > value is > "Universit=E4t". and in the XML returned from pywrapper it becomes > "Universität". It seems not correct. Could anybody tell =20 > me how to > configure pywrapper to support Unicode? thanks in advance. > > Cheers, > Shunde. > > > > ----------------------------------------------------------------------=20= > --- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel |
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From: Shunde Z. <shu...@ad...> - 2007-06-13 05:08:23
|
Hi all, Does pywrapper support unicode? I've done a test. In database, my value is "Universität". and in the XML returned from pywrapper it becomes "Universität". It seems not correct. Could anybody tell me how to configure pywrapper to support Unicode? thanks in advance. Cheers, Shunde. |
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From: Shunde Z. <shu...@ad...> - 2007-06-13 00:10:05
|
Hi all, I've written a program using multi-threads to send queries at the same time. I was working before. Yesterday I put in more records to my database(~300000). Today I ran my program, I found that it works if I send one only query at one time. If I sent 2 queries at the same time, it gives me an error. <!-- CONTENT START --> <error xmlns="http://rs.tdwg.org/tapir/1.0" time="2007-06-07 11:13:10.23" level="ERROR">Response preparation and data retrieval error</error> <!-- CONTENT END --> <diagnostics> <diagnostic time="2007-06-07T11:13:02.44" level="INFO">Reading request</diagnostic> <diagnostic time="2007-06-07T11:13:02.49" level="INFO">Read model http://rs.tdwg.org/tapir/cs/abcd/2.06/model/abcd206.xml</diagnostic> <diagnostic time="2007-06-07T11:13:02.51" level="INFO">Request fully parsed</diagnostic> <diagnostic time="2007-06-07T11:13:02.51" level="INFO">Get distinct records...</diagnostic> <diagnostic time="2007-06-07T11:13:02.52" level="INFO">Executing SQL: "SELECT DISTINCT TaxonName.Genus, TaxonName.Species FROM TaxonName AS TaxonName ORDER BY TaxonName.Genus, TaxonName.Species LIMIT 21 OFFSET 0"</diagnostic> <diagnostic time="2007-06-07T11:13:03.47" level="INFO">Parsed response structure contains 991 leaf concepts with type out of 1663 nodes in total</diag nostic> <diagnostic time="2007-06-07T11:13:04.14" level="INFO">Request fully parsed</diagnostic> <diagnostic time="2007-06-07T11:13:04.15" level="INFO">Init model ACBD 2.06 with datasource preferences</diagnostic> <diagnostic time="2007-06-07T11:13:04.55" level="INFO">Model init finished. The model contains 1324 mapped concepts for datasource 'avh' out of 1324 m odel nodes mapped.</diagnostic> <diagnostic time="2007-06-07T11:13:04.55" level="INFO">Update model structure with datasource preferences</diagnostic> <diagnostic time="2007-06-07T11:13:10.17" level="INFO">DB query finished</diagnostic> <diagnostic time="2007-06-07T11:13:10.17" level="ERROR">GENERATING_CONTENT_FAILED</diagnostic> <diagnostic time="2007-06-07T11:13:10.23" level="ERROR">Response preparation and data retrieval error</diagnostic> <diagnostic time="2007-06-07T11:13:10.24" level="ERROR">GENERATING_CONTENT_FAILED</diagnostic> Strangely, i sent one inventory and one search, but the errors I got are the same, which is like doing an inventory query as above. Could you please give me some idea of how to solve it? thanks a lot. Cheers, Shunde. |
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From: Shunde Z. <shu...@ad...> - 2007-06-07 01:45:43
|
Hi all, I've written a program using multi-threads to send queries at the same time. I was working before. Yesterday I put in more records to my database(~300000). Today I ran my program, I found that it works if I send one only query at one time. If I sent 2 queries at the same time, it gives me an error. <!-- CONTENT START --> <error xmlns="http://rs.tdwg.org/tapir/1.0" time="2007-06-07 11:13:10.23" level="ERROR">Response preparation and data retrieval error</error> <!-- CONTENT END --> <diagnostics> <diagnostic time="2007-06-07T11:13:02.44" level="INFO">Reading request</diagnostic> <diagnostic time="2007-06-07T11:13:02.49" level="INFO">Read model http://rs.tdwg.org/tapir/cs/abcd/2.06/model/abcd206.xml</diagnostic> <diagnostic time="2007-06-07T11:13:02.51" level="INFO">Request fully parsed</diagnostic> <diagnostic time="2007-06-07T11:13:02.51" level="INFO">Get distinct records...</diagnostic> <diagnostic time="2007-06-07T11:13:02.52" level="INFO">Executing SQL: "SELECT DISTINCT TaxonName.Genus, TaxonName.Species FROM TaxonName AS TaxonName ORDER BY TaxonName.Genus, TaxonName.Species LIMIT 21 OFFSET 0"</diagnostic> <diagnostic time="2007-06-07T11:13:03.47" level="INFO">Parsed response structure contains 991 leaf concepts with type out of 1663 nodes in total</diag nostic> <diagnostic time="2007-06-07T11:13:04.14" level="INFO">Request fully parsed</diagnostic> <diagnostic time="2007-06-07T11:13:04.15" level="INFO">Init model ACBD 2.06 with datasource preferences</diagnostic> <diagnostic time="2007-06-07T11:13:04.55" level="INFO">Model init finished. The model contains 1324 mapped concepts for datasource 'avh' out of 1324 m odel nodes mapped.</diagnostic> <diagnostic time="2007-06-07T11:13:04.55" level="INFO">Update model structure with datasource preferences</diagnostic> <diagnostic time="2007-06-07T11:13:10.17" level="INFO">DB query finished</diagnostic> <diagnostic time="2007-06-07T11:13:10.17" level="ERROR">GENERATING_CONTENT_FAILED</diagnostic> <diagnostic time="2007-06-07T11:13:10.23" level="ERROR">Response preparation and data retrieval error</diagnostic> <diagnostic time="2007-06-07T11:13:10.24" level="ERROR">GENERATING_CONTENT_FAILED</diagnostic> Strangely, i sent one inventory and one search, but the errors I got are the same, which is like doing an inventory query as above. Could you please give me some idea of how to solve it? thanks a lot. Cheers, Shunde. Quoting Markus Döring <m.d...@bg...>: > shunde, > you are right in your assumptions. it needs to be external so it can > be shared across the network of providers. > but pypwrapper caches the file and you can specify the > cacheExpiration time for all downloaded files (actually ANY > downloaded file is being cached locally) > > http://trac.pywrapper.org/pywrapper/browser/trunk/config/config.ini > > cheers > -- > Markus > > > > On 29.05.2007, at 07:23, Shunde Zhang wrote: > > > Hi all, > > > > I am writing a program to access pywrapper3.1alpha. When I compose > > a request XML > > to do a 'search', I found that I need to put in outputModel, or > > externalOutputModel, otherwise it will give me: > > ERROR! GENERATING_CONTENT_FAILED > > > > The external location for it is: > > http://rs.tdwg.org/tapir/cs/abcd/2.06/model/abcd206.xml > > > > Does it mean for each query pywrapper will go and grab this to > > render the output > > xml? > > > > I would like to know if pywrapper have such a file installed in its > > directory so > > that I dont need to make an external connection. > > > > Can this be configured as a default location so that I don't need > > to specify it > > in each query XML? > > > > Thanks a lot. > > > > Cheers, > > Shunde. > > > > ---------------------------------------------------------------------- > > --- > > This SF.net email is sponsored by DB2 Express > > Download DB2 Express C - the FREE version of DB2 express and take > > control of your XML. No limits. Just data. Click to get it now. > > http://sourceforge.net/powerbar/db2/ > > _______________________________________________ > > PyWrapper-devel mailing list > > PyW...@li... > > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > |
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From: <m.d...@bg...> - 2007-05-29 10:11:31
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shunde, you are right in your assumptions. it needs to be external so it can be shared across the network of providers. but pypwrapper caches the file and you can specify the cacheExpiration time for all downloaded files (actually ANY downloaded file is being cached locally) http://trac.pywrapper.org/pywrapper/browser/trunk/config/config.ini cheers -- Markus On 29.05.2007, at 07:23, Shunde Zhang wrote: > Hi all, > > I am writing a program to access pywrapper3.1alpha. When I compose > a request XML > to do a 'search', I found that I need to put in outputModel, or > externalOutputModel, otherwise it will give me: > ERROR! GENERATING_CONTENT_FAILED > > The external location for it is: > http://rs.tdwg.org/tapir/cs/abcd/2.06/model/abcd206.xml > > Does it mean for each query pywrapper will go and grab this to > render the output > xml? > > I would like to know if pywrapper have such a file installed in its > directory so > that I dont need to make an external connection. > > Can this be configured as a default location so that I don't need > to specify it > in each query XML? > > Thanks a lot. > > Cheers, > Shunde. > > ---------------------------------------------------------------------- > --- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel |
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From: Shunde Z. <shu...@ad...> - 2007-05-29 05:23:01
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Hi all, I am writing a program to access pywrapper3.1alpha. When I compose a request XML to do a 'search', I found that I need to put in outputModel, or externalOutputModel, otherwise it will give me: ERROR! GENERATING_CONTENT_FAILED The external location for it is: http://rs.tdwg.org/tapir/cs/abcd/2.06/model/abcd206.xml Does it mean for each query pywrapper will go and grab this to render the output xml? I would like to know if pywrapper have such a file installed in its directory so that I dont need to make an external connection. Can this be configured as a default location so that I don't need to specify it in each query XML? Thanks a lot. Cheers, Shunde. |
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From: <m.d...@bg...> - 2007-05-25 15:10:38
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thats normal. the models are done by renato and use some variables =20 that are not (yet) tapir standard. I should only raise a warning really instead of an error, but well =20 thats how it is. nothing to worry about. Im glad that it all works -- Markus On 25.05.2007, at 15:03, Rojas, Fernando (CIAT) wrote: > Markus: > > Yes it's strange; today I re-run the ./install.sh. I didn't change =20 > nothing; and server started; this is the message: > > > [root@gene4 tools]# python/bin/python ../webapp/start_server.py 8081 > DEBUGGING activated > CACHE EXPIRATION 1500 min > ERROR! The model http://rs.tdwg.org/tapir/cs/dwc/1.4/model/=20 > abcd206.xml is not valid or readable: The model contains an unknown =20= > variable mapping dataSourceDescription > > ERROR! The model http://rs.tdwg.org/tapir/cs/dwc/1.4/model/rss2.xml =20= > is not valid or readable: The model contains an unknown variable =20 > mapping dataSourceDescription > > Configure PyWrapper v3.1.0alpha CherryPy server using /data/=20 > pywrapper_3.1.0alpha/config/webapp.cfg > mounting PyWrapper webapps to /pywrapper > run server on port 8081 > http://gene4.ciat.cgiar.org:8081/pywrapper > start engine... > > Which is the cause of this Model Errors.?? > > Thanks > > > -----Original Message----- > From: Markus D=F6ring [mailto:m.d...@bg...] > Sent: Friday, May 25, 2007 6:26 AM > To: Rojas, Fernando (CIAT); PyWrapper Developers mailing list > Subject: Re: [PyWrapper-devel] PyWrapper 3.1.0alpha released > > Fernando, > that is indeed strange. didn't the install script complain? > when running the script there should be something like this without =20= > warnings or errors-: > > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D > Installing libxml2 > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D > Installing libxslt > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D > Installing setuptools > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D > Installing lxml > > I hope to find time next week to reproduce the error on my machine =20 > cheers > -- > Markus > > > > On 24.05.2007, at 17:41, Rojas, Fernando (CIAT) wrote: > >> HI Markus: >> >> Im trying now with 3.1 in a new installation; I downloaded the file; >> unpack it in a new folder and run the ./install.sh. >> After I edit the config.ini file and fixed the necessary parameters. >> Im starting the server but appears this warning and the server don't >> start: >> >> [root@gene4 tools]# pwd >> /data/pywrapper_3.1.0alpha/tools >> >> [root@gene4 tools]# python/bin/python ../webapp/start_server.py 8081 >> Warning! lxml is not yet installed (XSLT library). Please install =20 >> lxml >> first. >> >> Do i need install this library manually.?? Was not installed in the >> install process.?? >> Could I get it from the old installation(3.0) where can find it.?? >> >> Thank you for youtr attention. >> >> Fernando Rojas >> >> >> -----Original Message----- >> From: pyw...@li... >> [mailto:pyw...@li...] On Behalf Of >> Markus D=F6ring >> Sent: Friday, April 20, 2007 11:58 AM >> To: PyWrapper Developers mailing list >> Subject: Re: [PyWrapper-devel] PyWrapper 3.1.0alpha released >> >> Fernando, >> good question, there aint any yet :) >> >> basically you do a new installation and then copy your previous >> datasource configuration files (config/datasources/xxx into the new >> installation. The only configuration file that changed from 3.0 to >> 3.1 is the main server configuration config/config.ini So please use >> the new default one and edit it to reflect your previous settings >> (there are only 3 or 4 simple parameters in there you might have >> changed). >> >> and please let me know if you run into any problems. >> -- >> Markus >> >> >> >> On 20.04.2007, at 18:33, Rojas, Fernando (CIAT) wrote: >> >>> Thank You Markus; >>> >>> Where can I find doumentation for make the UPGRADE from 3.0 to 3.1?? >>> >>> Thanks >>> >>> -----Original Message----- >>> From: pyw...@li... >>> [mailto:pyw...@li...] On Behalf Of >>> Markus D=F6ring >>> Sent: Friday, April 20, 2007 8:37 AM >>> To: tdw...@li...; PyWrapper Developers mailing list; >>> BiocaseSupport >>> Subject: [PyWrapper-devel] PyWrapper 3.1.0alpha released >>> >>> Hi Tapiris, >>> >>> I've just released the alpha version of PyWrapper 3.1 that finally >>> supports all the TAPIR protocol changes we agreed upon during the >>> last developer meeting at GBIF. It now also runs with the latest >>> version of Python2.5. Download & installation instructions can be >>> found here as >>> usual: >>> >>> http://trac.pywrapper.org/pywrapper/wiki/Downloads >>> >>> The final 3.1 release will add some minor bug fixes and most >>> innovative a new LSID resolver written by Kevin Richards. The =20 >>> missing >>> steps until the final 3.1 release can be found here: >>> >>> http://trac.pywrapper.org/pywrapper/milestone/3.1.0 >>> http://trac.pywrapper.org/pywrapper/query? >>> status=3Dnew&status=3Dassigned&status=3Dreopened&milestone=3D3.1.0 >>> >>> If you encounter any bugs in pywrapper, please issue a ticket on >>> pywrapper.org If you prefer to write emails, feel free to send them >>> to me or this mailing list. >>> >>> For those of you who can't be bothered to install a TAPIR service, >>> here is a demo service running at the BGBM, please be kind: >>> http://search.biocase.org/tapir/ >>> >>> Cheers >>> Markus >>> >>> >>> -- >>> Markus D=F6ring >>> Botanic Garden and Botanical Museum Berlin Dahlem, >>> Dept. of Biodiversity Informatics >>> K=F6nigin-Luise-Str. 6-8, D-14191 Berlin >>> +49 (30) 83850-284 >>> m.d...@bg... >>> >>> >>> >>> --------------------------------------------------------------------=20= >>> - >>> - >>> --- >>> This SF.net email is sponsored by DB2 Express Download DB2 Express C >>> - the FREE version of DB2 express and take control of your XML. >>> No limits. Just data. Click to get it now. >>> http://sourceforge.net/powerbar/db2/ >>> _______________________________________________ >>> PyWrapper-devel mailing list >>> PyW...@li... >>> https://lists.sourceforge.net/lists/listinfo/pywrapper-devel >>> >>> --------------------------------------------------------------------=20= >>> - >>> - >>> --- >>> This SF.net email is sponsored by DB2 Express Download DB2 Express C >>> - the FREE version of DB2 express and take control of your XML. No >>> limits. Just data. Click to get it now. >>> http://sourceforge.net/powerbar/db2/ >>> _______________________________________________ >>> PyWrapper-devel mailing list >>> PyW...@li... >>> https://lists.sourceforge.net/lists/listinfo/pywrapper-devel >> >> >> ---------------------------------------------------------------------=20= >> - >> --- >> This SF.net email is sponsored by DB2 Express Download DB2 Express =20= >> C - >> the FREE version of DB2 express and take control of your XML. >> No limits. Just data. Click to get it now. >> http://sourceforge.net/powerbar/db2/ >> _______________________________________________ >> PyWrapper-devel mailing list >> PyW...@li... >> https://lists.sourceforge.net/lists/listinfo/pywrapper-devel >> >> ---------------------------------------------------------------------=20= >> - >> --- >> This SF.net email is sponsored by DB2 Express Download DB2 Express =20= >> C - >> the FREE version of DB2 express and take control of your XML. No >> limits. Just data. Click to get it now. >> http://sourceforge.net/powerbar/db2/ >> _______________________________________________ >> PyWrapper-devel mailing list >> PyW...@li... >> https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > > > ----------------------------------------------------------------------=20= > --- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel |
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From: Rojas, F. \(CIAT\) <F....@CG...> - 2007-05-25 13:04:07
|
Markus: Yes it's strange; today I re-run the ./install.sh. I didn't change = nothing; and server started; this is the message: [root@gene4 tools]# python/bin/python ../webapp/start_server.py 8081 DEBUGGING activated CACHE EXPIRATION 1500 min ERROR! The model http://rs.tdwg.org/tapir/cs/dwc/1.4/model/abcd206.xml = is not valid or readable: The model contains an unknown variable mapping = dataSourceDescription ERROR! The model http://rs.tdwg.org/tapir/cs/dwc/1.4/model/rss2.xml is = not valid or readable: The model contains an unknown variable mapping = dataSourceDescription Configure PyWrapper v3.1.0alpha CherryPy server using = /data/pywrapper_3.1.0alpha/config/webapp.cfg mounting PyWrapper webapps to /pywrapper run server on port 8081 http://gene4.ciat.cgiar.org:8081/pywrapper start engine...=20 Which is the cause of this Model Errors.?? Thanks -----Original Message----- From: Markus D=F6ring [mailto:m.d...@bg...]=20 Sent: Friday, May 25, 2007 6:26 AM To: Rojas, Fernando (CIAT); PyWrapper Developers mailing list Subject: Re: [PyWrapper-devel] PyWrapper 3.1.0alpha released Fernando, that is indeed strange. didn't the install script complain? when running the script there should be something like this without = warnings or errors-: =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D Installing libxml2 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D Installing libxslt =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D Installing setuptools =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D Installing lxml I hope to find time next week to reproduce the error on my machine = cheers -- Markus On 24.05.2007, at 17:41, Rojas, Fernando (CIAT) wrote: > HI Markus: > > Im trying now with 3.1 in a new installation; I downloaded the file;=20 > unpack it in a new folder and run the ./install.sh. > After I edit the config.ini file and fixed the necessary parameters. > Im starting the server but appears this warning and the server don't=20 > start: > > [root@gene4 tools]# pwd > /data/pywrapper_3.1.0alpha/tools > > [root@gene4 tools]# python/bin/python ../webapp/start_server.py 8081=20 > Warning! lxml is not yet installed (XSLT library). Please install lxml = > first. > > Do i need install this library manually.?? Was not installed in the=20 > install process.?? > Could I get it from the old installation(3.0) where can find it.?? > > Thank you for youtr attention. > > Fernando Rojas > > > -----Original Message----- > From: pyw...@li... > [mailto:pyw...@li...] On Behalf Of=20 > Markus D=F6ring > Sent: Friday, April 20, 2007 11:58 AM > To: PyWrapper Developers mailing list > Subject: Re: [PyWrapper-devel] PyWrapper 3.1.0alpha released > > Fernando, > good question, there aint any yet :) > > basically you do a new installation and then copy your previous=20 > datasource configuration files (config/datasources/xxx into the new=20 > installation. The only configuration file that changed from 3.0 to > 3.1 is the main server configuration config/config.ini So please use=20 > the new default one and edit it to reflect your previous settings=20 > (there are only 3 or 4 simple parameters in there you might have=20 > changed). > > and please let me know if you run into any problems. > -- > Markus > > > > On 20.04.2007, at 18:33, Rojas, Fernando (CIAT) wrote: > >> Thank You Markus; >> >> Where can I find doumentation for make the UPGRADE from 3.0 to 3.1?? >> >> Thanks >> >> -----Original Message----- >> From: pyw...@li... >> [mailto:pyw...@li...] On Behalf Of=20 >> Markus D=F6ring >> Sent: Friday, April 20, 2007 8:37 AM >> To: tdw...@li...; PyWrapper Developers mailing list;=20 >> BiocaseSupport >> Subject: [PyWrapper-devel] PyWrapper 3.1.0alpha released >> >> Hi Tapiris, >> >> I've just released the alpha version of PyWrapper 3.1 that finally=20 >> supports all the TAPIR protocol changes we agreed upon during the=20 >> last developer meeting at GBIF. It now also runs with the latest=20 >> version of Python2.5. Download & installation instructions can be=20 >> found here as >> usual: >> >> http://trac.pywrapper.org/pywrapper/wiki/Downloads >> >> The final 3.1 release will add some minor bug fixes and most=20 >> innovative a new LSID resolver written by Kevin Richards. The missing = >> steps until the final 3.1 release can be found here: >> >> http://trac.pywrapper.org/pywrapper/milestone/3.1.0 >> http://trac.pywrapper.org/pywrapper/query? >> status=3Dnew&status=3Dassigned&status=3Dreopened&milestone=3D3.1.0 >> >> If you encounter any bugs in pywrapper, please issue a ticket on=20 >> pywrapper.org If you prefer to write emails, feel free to send them=20 >> to me or this mailing list. >> >> For those of you who can't be bothered to install a TAPIR service,=20 >> here is a demo service running at the BGBM, please be kind: >> http://search.biocase.org/tapir/ >> >> Cheers >> Markus >> >> >> -- >> Markus D=F6ring >> Botanic Garden and Botanical Museum Berlin Dahlem, >> Dept. of Biodiversity Informatics >> K=F6nigin-Luise-Str. 6-8, D-14191 Berlin >> +49 (30) 83850-284 >> m.d...@bg... >> >> >> >> --------------------------------------------------------------------- >> - >> --- >> This SF.net email is sponsored by DB2 Express Download DB2 Express C=20 >> - the FREE version of DB2 express and take control of your XML. >> No limits. Just data. Click to get it now. >> http://sourceforge.net/powerbar/db2/ >> _______________________________________________ >> PyWrapper-devel mailing list >> PyW...@li... >> https://lists.sourceforge.net/lists/listinfo/pywrapper-devel >> >> --------------------------------------------------------------------- >> - >> --- >> This SF.net email is sponsored by DB2 Express Download DB2 Express C=20 >> - the FREE version of DB2 express and take control of your XML. No=20 >> limits. Just data. Click to get it now. >> http://sourceforge.net/powerbar/db2/ >> _______________________________________________ >> PyWrapper-devel mailing list >> PyW...@li... >> https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > > > ---------------------------------------------------------------------- > --- > This SF.net email is sponsored by DB2 Express Download DB2 Express C - = > the FREE version of DB2 express and take control of your XML. > No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > > ---------------------------------------------------------------------- > --- > This SF.net email is sponsored by DB2 Express Download DB2 Express C - = > the FREE version of DB2 express and take control of your XML. No=20 > limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel |
|
From: <m.d...@bg...> - 2007-05-25 11:30:35
|
Fernando, that is indeed strange. didn't the install script complain? when running the script there should be something like this without =20 warnings or errors-: =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D Installing libxml2 =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D Installing libxslt =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D Installing setuptools =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D Installing lxml I hope to find time next week to reproduce the error on my machine cheers -- Markus On 24.05.2007, at 17:41, Rojas, Fernando (CIAT) wrote: > HI Markus: > > Im trying now with 3.1 in a new installation; I downloaded the =20 > file; unpack it in a new folder and run the ./install.sh. > After I edit the config.ini file and fixed the necessary parameters. > Im starting the server but appears this warning and the server =20 > don't start: > > [root@gene4 tools]# pwd > /data/pywrapper_3.1.0alpha/tools > > [root@gene4 tools]# python/bin/python ../webapp/start_server.py 8081 > Warning! lxml is not yet installed (XSLT library). Please install =20 > lxml first. > > Do i need install this library manually.?? Was not installed in the =20= > install process.?? > Could I get it from the old installation(3.0) where can find it.?? > > Thank you for youtr attention. > > Fernando Rojas > > > -----Original Message----- > From: pyw...@li... =20 > [mailto:pyw...@li...] On Behalf Of =20= > Markus D=F6ring > Sent: Friday, April 20, 2007 11:58 AM > To: PyWrapper Developers mailing list > Subject: Re: [PyWrapper-devel] PyWrapper 3.1.0alpha released > > Fernando, > good question, there aint any yet :) > > basically you do a new installation and then copy your previous =20 > datasource configuration files (config/datasources/xxx into the new =20= > installation. The only configuration file that changed from 3.0 to > 3.1 is the main server configuration config/config.ini So please =20 > use the new default one and edit it to reflect your previous =20 > settings (there are only 3 or 4 simple parameters in there you =20 > might have changed). > > and please let me know if you run into any problems. > -- > Markus > > > > On 20.04.2007, at 18:33, Rojas, Fernando (CIAT) wrote: > >> Thank You Markus; >> >> Where can I find doumentation for make the UPGRADE from 3.0 to 3.1?? >> >> Thanks >> >> -----Original Message----- >> From: pyw...@li... >> [mailto:pyw...@li...] On Behalf Of >> Markus D=F6ring >> Sent: Friday, April 20, 2007 8:37 AM >> To: tdw...@li...; PyWrapper Developers mailing list; >> BiocaseSupport >> Subject: [PyWrapper-devel] PyWrapper 3.1.0alpha released >> >> Hi Tapiris, >> >> I've just released the alpha version of PyWrapper 3.1 that finally >> supports all the TAPIR protocol changes we agreed upon during the =20 >> last >> developer meeting at GBIF. It now also runs with the latest =20 >> version of >> Python2.5. Download & installation instructions can be found here as >> usual: >> >> http://trac.pywrapper.org/pywrapper/wiki/Downloads >> >> The final 3.1 release will add some minor bug fixes and most >> innovative a new LSID resolver written by Kevin Richards. The missing >> steps until the final 3.1 release can be found here: >> >> http://trac.pywrapper.org/pywrapper/milestone/3.1.0 >> http://trac.pywrapper.org/pywrapper/query? >> status=3Dnew&status=3Dassigned&status=3Dreopened&milestone=3D3.1.0 >> >> If you encounter any bugs in pywrapper, please issue a ticket on >> pywrapper.org If you prefer to write emails, feel free to send =20 >> them to >> me or this mailing list. >> >> For those of you who can't be bothered to install a TAPIR service, >> here is a demo service running at the BGBM, please be kind: >> http://search.biocase.org/tapir/ >> >> Cheers >> Markus >> >> >> -- >> Markus D=F6ring >> Botanic Garden and Botanical Museum Berlin Dahlem, >> Dept. of Biodiversity Informatics >> K=F6nigin-Luise-Str. 6-8, D-14191 Berlin >> +49 (30) 83850-284 >> m.d...@bg... >> >> >> >> ---------------------------------------------------------------------=20= >> - >> --- >> This SF.net email is sponsored by DB2 Express Download DB2 Express =20= >> C - >> the FREE version of DB2 express and take control of your XML. >> No limits. Just data. Click to get it now. >> http://sourceforge.net/powerbar/db2/ >> _______________________________________________ >> PyWrapper-devel mailing list >> PyW...@li... >> https://lists.sourceforge.net/lists/listinfo/pywrapper-devel >> >> ---------------------------------------------------------------------=20= >> - >> --- >> This SF.net email is sponsored by DB2 Express Download DB2 Express =20= >> C - >> the FREE version of DB2 express and take control of your XML. No >> limits. Just data. Click to get it now. >> http://sourceforge.net/powerbar/db2/ >> _______________________________________________ >> PyWrapper-devel mailing list >> PyW...@li... >> https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > > > ----------------------------------------------------------------------=20= > --- > This SF.net email is sponsored by DB2 Express Download DB2 Express =20 > C - the FREE version of DB2 express and take control of your XML. =20 > No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > > ----------------------------------------------------------------------=20= > --- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel |
|
From: <m.d...@bg...> - 2007-05-25 08:31:09
|
wow, leaves me puzzled as well. Have you tried to replace the entire file with a fresh one? does it work then? -- Markus On 24.05.2007, at 15:27, Edwin van Spronsen wrote: > Hello Markus, > > While I was trying to install PyWrapper 3.1, I came across a > strange error message: > > ConfigParser.ParsingError: File contains parsing errors: C:\Program > Files\PyWrapper\config\config.ini > [line 43]: '0' > > I adjusted this config.ini file similar to the one in PyWrapper 3.0 > which never caused me trouble. I left the two new lines to their > default values. The strange thing is: this file contains only 25 > lines, so how can there be an error in line 43? > > I'll be on vacation for the next three weeks, so I won't be able to > read your response for a while, but I showed this problem to Wouter > Addink and he was puzzled as well, so maybe you can respond to him > and then I'll hear about it when I return. > > Regards, > > Edwin van Spronsen |
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From: Rojas, F. \(CIAT\) <F....@CG...> - 2007-05-24 17:13:21
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HI Markus: Im trying now with 3.1 in a new installation; I downloaded the file; = unpack it in a new folder and run the ./install.sh. After I edit the config.ini file and fixed the necessary parameters. Im starting the server but appears this warning and the server don't = start: [root@gene4 tools]# pwd /data/pywrapper_3.1.0alpha/tools [root@gene4 tools]# python/bin/python ../webapp/start_server.py 8081 Warning! lxml is not yet installed (XSLT library). Please install lxml = first. Do i need install this library manually.?? Was not installed in the = install process.?? Could I get it from the old installation(3.0) where can find it.?? Thank you for youtr attention. Fernando Rojas =20 -----Original Message----- From: pyw...@li... = [mailto:pyw...@li...] On Behalf Of = Markus D=F6ring Sent: Friday, April 20, 2007 11:58 AM To: PyWrapper Developers mailing list Subject: Re: [PyWrapper-devel] PyWrapper 3.1.0alpha released Fernando, good question, there aint any yet :) basically you do a new installation and then copy your previous = datasource configuration files (config/datasources/xxx into the new = installation. The only configuration file that changed from 3.0 to 3.1 is the main server configuration config/config.ini So please use the = new default one and edit it to reflect your previous settings (there are = only 3 or 4 simple parameters in there you might have changed). and please let me know if you run into any problems. -- Markus On 20.04.2007, at 18:33, Rojas, Fernando (CIAT) wrote: > Thank You Markus; > > Where can I find doumentation for make the UPGRADE from 3.0 to 3.1?? > > Thanks > > -----Original Message----- > From: pyw...@li... > [mailto:pyw...@li...] On Behalf Of=20 > Markus D=F6ring > Sent: Friday, April 20, 2007 8:37 AM > To: tdw...@li...; PyWrapper Developers mailing list;=20 > BiocaseSupport > Subject: [PyWrapper-devel] PyWrapper 3.1.0alpha released > > Hi Tapiris, > > I've just released the alpha version of PyWrapper 3.1 that finally=20 > supports all the TAPIR protocol changes we agreed upon during the last = > developer meeting at GBIF. It now also runs with the latest version of = > Python2.5. Download & installation instructions can be found here as=20 > usual: > > http://trac.pywrapper.org/pywrapper/wiki/Downloads > > The final 3.1 release will add some minor bug fixes and most=20 > innovative a new LSID resolver written by Kevin Richards. The missing=20 > steps until the final 3.1 release can be found here: > > http://trac.pywrapper.org/pywrapper/milestone/3.1.0 > http://trac.pywrapper.org/pywrapper/query? > status=3Dnew&status=3Dassigned&status=3Dreopened&milestone=3D3.1.0 > > If you encounter any bugs in pywrapper, please issue a ticket on=20 > pywrapper.org If you prefer to write emails, feel free to send them to = > me or this mailing list. > > For those of you who can't be bothered to install a TAPIR service,=20 > here is a demo service running at the BGBM, please be kind: > http://search.biocase.org/tapir/ > > Cheers > Markus > > > -- > Markus D=F6ring > Botanic Garden and Botanical Museum Berlin Dahlem, > Dept. of Biodiversity Informatics > K=F6nigin-Luise-Str. 6-8, D-14191 Berlin > +49 (30) 83850-284 > m.d...@bg... > > > > ---------------------------------------------------------------------- > --- > This SF.net email is sponsored by DB2 Express Download DB2 Express C - = > the FREE version of DB2 express and take control of your XML. > No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > > ---------------------------------------------------------------------- > --- > This SF.net email is sponsored by DB2 Express Download DB2 Express C - = > the FREE version of DB2 express and take control of your XML. No=20 > limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel -------------------------------------------------------------------------= This SF.net email is sponsored by DB2 Express Download DB2 Express C - = the FREE version of DB2 express and take control of your XML. No limits. = Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ PyWrapper-devel mailing list PyW...@li... https://lists.sourceforge.net/lists/listinfo/pywrapper-devel |
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From: Rojas, F. \(CIAT\) <F....@CG...> - 2007-05-23 17:34:46
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Markus: I don't have tried yet 3.1.=20 But now I have a problem starting the 3.0: I usualy do this: [root@gene4 tools]# svn update At revision 1162. After: [root@gene4 tools]# python/bin/python ../webapp/start_server.py 8081 DEBUGGING activated CACHE EXPIRATION 1500 min ERROR! The model http://rs.tdwg.org/tapir/cs/dwc/1.4/model/abcd206.xml = is not valid or readable: The model contains an unknown variable mapping = dataSourceDescription ERROR! The model http://rs.tdwg.org/tapir/cs/dwc/1.4/model/rss2.xml is = not valid or readable: The model contains an unknown variable mapping = dataSourceDescription Configure PyWrapper v3.1.0alpha CherryPy server mounting PyWrapper to = http://gene4.ciat.cgiar.org:8081/pywrapper/pywrapper mounting LSID resolver to http://gene4.ciat.cgiar.org:8081/authority Traceback (most recent call last): File "../webapp/start_server.py", line 156, in ? configureServer(port, console=3DTrue) File "../webapp/start_server.py", line 105, in configureServer webApp=3Dcherrypy.tree.mount(WebApps(), cfgObj.Server.webroot, = webappCfg) File "/data/pywrapper/lib/cherrypy/_cptree.py", line 112, in mount app.merge(config) File "/data/pywrapper/lib/cherrypy/_cptree.py", line 68, in merge _cpconfig.merge(self.config, config) File "/data/pywrapper/lib/cherrypy/_cpconfig.py", line 153, in merge for section, value_map in as_dict(other).iteritems(): File "/data/pywrapper/lib/cherrypy/_cpconfig.py", line 137, in as_dict config =3D _Parser().dict_from_file(config) File "/data/pywrapper/lib/cherrypy/_cpconfig.py", line 336, in = dict_from_file self.read(file) File "/data/pywrapper/lib/cherrypy/_cpconfig.py", line 309, in read self._read(fp, filename) File "/data/pywrapper/tools/python/lib/python2.4/ConfigParser.py", = line 462, in _read raise MissingSectionHeaderError(fpname, lineno, line) ConfigParser.MissingSectionHeaderError: File contains no section = headers. file: /data/pywrapper/config/webapp.cfg, line: 1 '<<<<<<< .mine\n' Error in atexit._run_exitfuncs: Traceback (most recent call last): File "/data/pywrapper/tools/python/lib/python2.4/atexit.py", line 24, = in _run_exitfuncs func(*targs, **kargs) File "/data/pywrapper/tools/python/lib/python2.4/logging/__init__.py", = line 1333, in shutdown h.close() File "/data/pywrapper/tools/python/lib/python2.4/logging/__init__.py", = line 674, in close del _handlers[self] KeyError: <logging.StreamHandler instance at 0xb7b4126c> Error in sys.exitfunc: Traceback (most recent call last): File "/data/pywrapper/tools/python/lib/python2.4/atexit.py", line 24, = in _run_exitfuncs func(*targs, **kargs) File "/data/pywrapper/tools/python/lib/python2.4/logging/__init__.py", = line 1333, in shutdown h.close() File "/data/pywrapper/tools/python/lib/python2.4/logging/__init__.py", = line 674, in close del _handlers[self] KeyError: <logging.StreamHandler instance at 0xb7b4126c>=20 Thank you for your help. -----Original Message----- From: pyw...@li... = [mailto:pyw...@li...] On Behalf Of = Markus D=F6ring Sent: Friday, April 20, 2007 11:58 AM To: PyWrapper Developers mailing list Subject: Re: [PyWrapper-devel] PyWrapper 3.1.0alpha released Fernando, good question, there aint any yet :) basically you do a new installation and then copy your previous = datasource configuration files (config/datasources/xxx into the new = installation. The only configuration file that changed from 3.0 to 3.1 is the main server configuration config/config.ini So please use the = new default one and edit it to reflect your previous settings (there are = only 3 or 4 simple parameters in there you might have changed). and please let me know if you run into any problems. -- Markus On 20.04.2007, at 18:33, Rojas, Fernando (CIAT) wrote: > Thank You Markus; > > Where can I find doumentation for make the UPGRADE from 3.0 to 3.1?? > > Thanks > > -----Original Message----- > From: pyw...@li... > [mailto:pyw...@li...] On Behalf Of=20 > Markus D=F6ring > Sent: Friday, April 20, 2007 8:37 AM > To: tdw...@li...; PyWrapper Developers mailing list;=20 > BiocaseSupport > Subject: [PyWrapper-devel] PyWrapper 3.1.0alpha released > > Hi Tapiris, > > I've just released the alpha version of PyWrapper 3.1 that finally=20 > supports all the TAPIR protocol changes we agreed upon during the last = > developer meeting at GBIF. It now also runs with the latest version of = > Python2.5. Download & installation instructions can be found here as=20 > usual: > > http://trac.pywrapper.org/pywrapper/wiki/Downloads > > The final 3.1 release will add some minor bug fixes and most=20 > innovative a new LSID resolver written by Kevin Richards. The missing=20 > steps until the final 3.1 release can be found here: > > http://trac.pywrapper.org/pywrapper/milestone/3.1.0 > http://trac.pywrapper.org/pywrapper/query? > status=3Dnew&status=3Dassigned&status=3Dreopened&milestone=3D3.1.0 > > If you encounter any bugs in pywrapper, please issue a ticket on=20 > pywrapper.org If you prefer to write emails, feel free to send them to = > me or this mailing list. > > For those of you who can't be bothered to install a TAPIR service,=20 > here is a demo service running at the BGBM, please be kind: > http://search.biocase.org/tapir/ > > Cheers > Markus > > > -- > Markus D=F6ring > Botanic Garden and Botanical Museum Berlin Dahlem, > Dept. of Biodiversity Informatics > K=F6nigin-Luise-Str. 6-8, D-14191 Berlin > +49 (30) 83850-284 > m.d...@bg... > > > > ---------------------------------------------------------------------- > --- > This SF.net email is sponsored by DB2 Express Download DB2 Express C - = > the FREE version of DB2 express and take control of your XML. > No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > > ---------------------------------------------------------------------- > --- > This SF.net email is sponsored by DB2 Express Download DB2 Express C - = > the FREE version of DB2 express and take control of your XML. No=20 > limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel -------------------------------------------------------------------------= This SF.net email is sponsored by DB2 Express Download DB2 Express C - = the FREE version of DB2 express and take control of your XML. No limits. = Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ PyWrapper-devel mailing list PyW...@li... https://lists.sourceforge.net/lists/listinfo/pywrapper-devel |
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From: Renato De G. <re...@cr...> - 2007-05-14 12:22:15
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Good point, Markus. I guess this happens only when you load concepts from the CNS, which can just provide a simple list of concepts (alias/id). If you load them directly from ABCD, you could make use of additional information to determine if the concept is mandatory or not. When I load DarwinCore concepts from the conceptual schema itself I can tell if a concept is mandatory by looking at the "nillable" attribute. In the future, when we have the CNS as a real service, we can think of ways to provide more information about concepts. Best Regards, -- Renato > I was thinking about that too. We already have that in the BioCASE > software. But the problem with TAPIR is that the concepts you map to are > themselves *not* mandatory. Only the output model which is used in a > request states that a certain concept is required. So basically any ABCD > or Darwin Core concept could be mandatory. The only way around I see is to > use a "canonical" model in the back to do the mapping, i.e. the model > which looks exactly like the schema that is used to define concepts. This > is an item on pywrappers requested feature list, but I dont have time to > do anything about it soon I am afraid. > > http://trac.pywrapper.org/pywrapper/ticket/97 > > > thanks, > markus > > > -----Original Message----- > From: pyw...@li... on behalf of Shunde > Zhang > Sent: Mon 5/14/2007 8:22 AM > To: PyWrapper Developers mailing list > Cc: > Subject: Re: [PyWrapper-devel] Query Result > > Hi Markus, > > Thanks for your reply. I finally got it working. Since I don't know which > concept is compulsory, I just missed some concepts. It would be good if I > add a > schema to the mapping, those must-have concepts will be added by default > so that > I don't need to look for them from the long long list. > > Sorry the system is in our intranet, so you cannot access it. Thanks > anyway. > > Cheers, > Shunde. |
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From: <m.d...@BG...> - 2007-05-14 10:59:50
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I was thinking about that too. We already have that in the BioCASE = software. But the problem with TAPIR is that the concepts you map to are = themselves *not* mandatory. Only the output model which is used in a = request states that a certain concept is required. So basically any ABCD = or Darwin Core concept could be mandatory. The only way around I see is = to use a "canonical" model in the back to do the mapping, i.e. the model = which looks exactly like the schema that is used to define concepts. = This is an item on pywrappers requested feature list, but I dont have = time to do anything about it soon I am afraid. http://trac.pywrapper.org/pywrapper/ticket/97 thanks, markus -----Original Message----- From: pyw...@li... on behalf of Shunde = Zhang Sent: Mon 5/14/2007 8:22 AM To: PyWrapper Developers mailing list Cc:=09 Subject: Re: [PyWrapper-devel] Query Result Hi Markus, Thanks for your reply. I finally got it working. Since I don't know = which concept is compulsory, I just missed some concepts. It would be good if = I add a schema to the mapping, those must-have concepts will be added by default = so that I don't need to look for them from the long long list. Sorry the system is in our intranet, so you cannot access it. Thanks = anyway. Cheers, Shunde. Quoting Markus D=F6ring <m.d...@bg...>: > Dear Shunde, > the problem is found in the diagnostics here: > > "The element /DataSets/DataSet..Sequence:-1360356980 was dropped 1 > times because of missing required subelements or attributes: > [u'TechnicalContacts']" > > This means that ABCD defines a mandatory element TechnicalContacts > that cannot be created. This usually results of missing mappings or > NULL in the data of that specific record. Is the configuration tool > externally visible? Then we (su...@bi...) could check your > mappings directly online. > > best wishes > -- > Markus > > > > On 10.05.2007, at 04:55, Shunde Zhang wrote: > > > Hi all, > > > > I just installed pywrapper 3.1.0a, and set up a simple mapping to > > ABCD 2.06. > > > > I now have mapped 8 concepts. and when I did a simple query, I got > > the correct > > number of records but not the content as below. I used Query Forms > > to do this. > > Could you please tell me if anything wrong with my config? Thanks a > > lot. > > > > Cheers, > > Shunde. > > > > > > <response xsi:schemaLocation=3D"http://rs.tdwg.org/tapir/1.0 > > http://rs.tdwg.org/tapir/1.0/schema/tapir.xsd"> > > - > > <header> > > - > > <source sendtime=3D"2007-05-10T12:14:09.34" > > = accesspoint=3D"http://ristretto.sapac.edu.au:8088/pywrapper/pywrapper? > > dsa=3Davh"> > > <software version=3D"3.1.0alpha" name=3D"PyWrapper"/> > > </source> > > - > > <custom> > > <pyw:webapps pyw:location=3D"http://ristretto.sapac.edu.au:8088/ > > pywrapper"/> > > </custom> > > </header> > > <!-- CONTENT START --> > > - > > <search> > > <summary start=3D"0" totalMatched=3D"1"/> > > </search> > > <!-- CONTENT END --> > > - > > <diagnostics> > > <diagnostic time=3D"2007-05-10T12:18:21.15" level=3D"INFO">Reading > > request</diagnostic> > > - > > <diagnostic time=3D"2007-05-10T12:18:21.21" level=3D"INFO"> > > Read model http://rs.tdwg.org/tapir/cs/abcd/2.06/model/abcd206.xml > > </diagnostic> > > - > > <diagnostic time=3D"2007-05-10T12:18:22.22" level=3D"INFO"> > > Parsed response structure contains 991 leaf concepts with type out > > of 1663 nodes > > in total > > </diagnostic> > > <diagnostic time=3D"2007-05-10T12:18:22.91" level=3D"INFO">Request = fully > > parsed</diagnostic> > > <diagnostic time=3D"2007-05-10T12:18:22.91" level=3D"INFO">Init = model > > ACBD 2.06 with > > datasource preferences</diagnostic> > > - > > <diagnostic time=3D"2007-05-10T12:18:23.26" level=3D"INFO"> > > Model init finished. The model contains 1324 mapped concepts for > > datasource > > 'avh' out of 1324 model nodes mapped. > > </diagnostic> > > <diagnostic time=3D"2007-05-10T12:18:23.26" level=3D"INFO">Update = model > > structure > > with datasource preferences</diagnostic> > > - > > <diagnostic time=3D"2007-05-10T12:18:26.11" level=3D"INFO"> > > Executing SQL: "SELECT COUNT(DISTINCT SpecimenRecord.Id) FROM > > SpecimenRecord AS > > SpecimenRecord JOIN TaxonName AS TaxonName ON > > SpecimenRecord.TaxonNameId =3D > > TaxonName.Id WHERE TaxonName.FullScientificName LIKE 'Baccharis > > pingraea' " > > </diagnostic> > > <diagnostic time=3D"2007-05-10T12:18:41.22" level=3D"INFO">DB query > > finished</diagnostic> > > - > > <diagnostic time=3D"2007-05-10T12:18:41.22" level=3D"INFO"> > > Ordering view by [TaxonName.FullScientificName(text)] > > </diagnostic> > > - > > <diagnostic time=3D"2007-05-10T12:18:41.23" level=3D"INFO"> > > Executing SQL: "SELECT DISTINCT SpecimenRecord.Id FROM > > SpecimenRecord AS > > SpecimenRecord JOIN TaxonName AS TaxonName ON > > SpecimenRecord.TaxonNameId =3D > > TaxonName.Id WHERE TaxonName.FullScientificName LIKE 'Baccharis > > pingraea' ORDER > > BY TaxonName.FullScientificName, SpecimenRecord.Id LIMIT 51 OFFSET = 0" > > </diagnostic> > > <diagnostic time=3D"2007-05-10T12:18:54.29" level=3D"INFO">DB query > > finished</diagnostic> > > - > > <diagnostic time=3D"2007-05-10T12:18:54.29" level=3D"INFO"> > > Executing SQL: "SELECT TaxonName.FullScientificName, > > SpecimenRecord.Id, > > SpecimenRecord.SourceInstitutionID, SpecimenRecord.UnitId, > > SpecimenRecord.DateLastEdited, TaxonName.Id, TaxonName.Genus, > > TaxonName.Species, > > CollectSite.Id, CollectSite.LongitudeDecimal, > > CollectSite.LatitudeDecimal FROM > > SpecimenRecord AS SpecimenRecord LEFT JOIN TaxonName AS TaxonName ON > > SpecimenRecord.TaxonNameId =3D TaxonName.Id LEFT JOIN CollectSite AS > > CollectSite > > ON SpecimenRecord.CollectSiteId =3D CollectSite.Id WHERE > > SpecimenRecord.Id IN > > ('459464') ORDER BY TaxonName.FullScientificName " > > </diagnostic> > > <diagnostic time=3D"2007-05-10T12:18:54.32" level=3D"INFO">DB query > > finished</diagnostic> > > <diagnostic time=3D"2007-05-10T12:18:54.32" level=3D"INFO">Create = XML > > content from > > recordset</diagnostic> > > <diagnostic time=3D"2007-05-10T12:18:54.32" level=3D"INFO">Use > > intelligent model > > interpreter</diagnostic> > > - > > <diagnostic time=3D"2007-05-10T12:18:54.32" level=3D"WARNING"> > > No content produced. Probably there were no matches for your query. > > </diagnostic> > > <diagnostic time=3D"2007-05-10T12:18:54.32" level=3D"INFO">Finished > > creating XML > > content</diagnostic> > > - > > <diagnostic time=3D"2007-05-10T12:18:54.32" level=3D"INFO"> > > Total number of elements created=3D0. Elements dropped=3D0 > > </diagnostic> > > - > > <diagnostic time=3D"2007-05-10T12:18:54.33" level=3D"WARNING"> > > The element /DataSets..Sequence:-1360356532 was dropped 1 times > > because of > > missing required subelements or attributes: [u'DataSet'] > > </diagnostic> > > - > > <diagnostic time=3D"2007-05-10T12:18:54.33" level=3D"WARNING"> > > The element /DataSets/DataSet..Sequence:-1360356980 was dropped 1 > > times because > > of missing required subelements or attributes: = [u'TechnicalContacts'] > > </diagnostic> > > </diagnostics> > > </response> > > > > = ---------------------------------------------------------------------- > > --- > > This SF.net email is sponsored by DB2 Express > > Download DB2 Express C - the FREE version of DB2 express and take > > control of your XML. No limits. Just data. Click to get it now. > > http://sourceforge.net/powerbar/db2/ > > _______________________________________________ > > PyWrapper-devel mailing list > > PyW...@li... > > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > > > = -------------------------------------------------------------------------= > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > -------------------------------------------------------------------------= This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ PyWrapper-devel mailing list PyW...@li... https://lists.sourceforge.net/lists/listinfo/pywrapper-devel |
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From: Shunde Z. <shu...@ad...> - 2007-05-14 06:22:40
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Hi Markus, Thanks for your reply. I finally got it working. Since I don't know which concept is compulsory, I just missed some concepts. It would be good if I add a schema to the mapping, those must-have concepts will be added by default so that I don't need to look for them from the long long list. Sorry the system is in our intranet, so you cannot access it. Thanks anyway. Cheers, Shunde. Quoting Markus Döring <m.d...@bg...>: > Dear Shunde, > the problem is found in the diagnostics here: > > "The element /DataSets/DataSet..Sequence:-1360356980 was dropped 1 > times because of missing required subelements or attributes: > [u'TechnicalContacts']" > > This means that ABCD defines a mandatory element TechnicalContacts > that cannot be created. This usually results of missing mappings or > NULL in the data of that specific record. Is the configuration tool > externally visible? Then we (su...@bi...) could check your > mappings directly online. > > best wishes > -- > Markus > > > > On 10.05.2007, at 04:55, Shunde Zhang wrote: > > > Hi all, > > > > I just installed pywrapper 3.1.0a, and set up a simple mapping to > > ABCD 2.06. > > > > I now have mapped 8 concepts. and when I did a simple query, I got > > the correct > > number of records but not the content as below. I used Query Forms > > to do this. > > Could you please tell me if anything wrong with my config? Thanks a > > lot. > > > > Cheers, > > Shunde. > > > > > > <response xsi:schemaLocation="http://rs.tdwg.org/tapir/1.0 > > http://rs.tdwg.org/tapir/1.0/schema/tapir.xsd"> > > − > > <header> > > − > > <source sendtime="2007-05-10T12:14:09.34" > > accesspoint="http://ristretto.sapac.edu.au:8088/pywrapper/pywrapper? > > dsa=avh"> > > <software version="3.1.0alpha" name="PyWrapper"/> > > </source> > > − > > <custom> > > <pyw:webapps pyw:location="http://ristretto.sapac.edu.au:8088/ > > pywrapper"/> > > </custom> > > </header> > > <!-- CONTENT START --> > > − > > <search> > > <summary start="0" totalMatched="1"/> > > </search> > > <!-- CONTENT END --> > > − > > <diagnostics> > > <diagnostic time="2007-05-10T12:18:21.15" level="INFO">Reading > > request</diagnostic> > > − > > <diagnostic time="2007-05-10T12:18:21.21" level="INFO"> > > Read model http://rs.tdwg.org/tapir/cs/abcd/2.06/model/abcd206.xml > > </diagnostic> > > − > > <diagnostic time="2007-05-10T12:18:22.22" level="INFO"> > > Parsed response structure contains 991 leaf concepts with type out > > of 1663 nodes > > in total > > </diagnostic> > > <diagnostic time="2007-05-10T12:18:22.91" level="INFO">Request fully > > parsed</diagnostic> > > <diagnostic time="2007-05-10T12:18:22.91" level="INFO">Init model > > ACBD 2.06 with > > datasource preferences</diagnostic> > > − > > <diagnostic time="2007-05-10T12:18:23.26" level="INFO"> > > Model init finished. The model contains 1324 mapped concepts for > > datasource > > 'avh' out of 1324 model nodes mapped. > > </diagnostic> > > <diagnostic time="2007-05-10T12:18:23.26" level="INFO">Update model > > structure > > with datasource preferences</diagnostic> > > − > > <diagnostic time="2007-05-10T12:18:26.11" level="INFO"> > > Executing SQL: "SELECT COUNT(DISTINCT SpecimenRecord.Id) FROM > > SpecimenRecord AS > > SpecimenRecord JOIN TaxonName AS TaxonName ON > > SpecimenRecord.TaxonNameId = > > TaxonName.Id WHERE TaxonName.FullScientificName LIKE 'Baccharis > > pingraea' " > > </diagnostic> > > <diagnostic time="2007-05-10T12:18:41.22" level="INFO">DB query > > finished</diagnostic> > > − > > <diagnostic time="2007-05-10T12:18:41.22" level="INFO"> > > Ordering view by [TaxonName.FullScientificName(text)] > > </diagnostic> > > − > > <diagnostic time="2007-05-10T12:18:41.23" level="INFO"> > > Executing SQL: "SELECT DISTINCT SpecimenRecord.Id FROM > > SpecimenRecord AS > > SpecimenRecord JOIN TaxonName AS TaxonName ON > > SpecimenRecord.TaxonNameId = > > TaxonName.Id WHERE TaxonName.FullScientificName LIKE 'Baccharis > > pingraea' ORDER > > BY TaxonName.FullScientificName, SpecimenRecord.Id LIMIT 51 OFFSET 0" > > </diagnostic> > > <diagnostic time="2007-05-10T12:18:54.29" level="INFO">DB query > > finished</diagnostic> > > − > > <diagnostic time="2007-05-10T12:18:54.29" level="INFO"> > > Executing SQL: "SELECT TaxonName.FullScientificName, > > SpecimenRecord.Id, > > SpecimenRecord.SourceInstitutionID, SpecimenRecord.UnitId, > > SpecimenRecord.DateLastEdited, TaxonName.Id, TaxonName.Genus, > > TaxonName.Species, > > CollectSite.Id, CollectSite.LongitudeDecimal, > > CollectSite.LatitudeDecimal FROM > > SpecimenRecord AS SpecimenRecord LEFT JOIN TaxonName AS TaxonName ON > > SpecimenRecord.TaxonNameId = TaxonName.Id LEFT JOIN CollectSite AS > > CollectSite > > ON SpecimenRecord.CollectSiteId = CollectSite.Id WHERE > > SpecimenRecord.Id IN > > ('459464') ORDER BY TaxonName.FullScientificName " > > </diagnostic> > > <diagnostic time="2007-05-10T12:18:54.32" level="INFO">DB query > > finished</diagnostic> > > <diagnostic time="2007-05-10T12:18:54.32" level="INFO">Create XML > > content from > > recordset</diagnostic> > > <diagnostic time="2007-05-10T12:18:54.32" level="INFO">Use > > intelligent model > > interpreter</diagnostic> > > − > > <diagnostic time="2007-05-10T12:18:54.32" level="WARNING"> > > No content produced. Probably there were no matches for your query. > > </diagnostic> > > <diagnostic time="2007-05-10T12:18:54.32" level="INFO">Finished > > creating XML > > content</diagnostic> > > − > > <diagnostic time="2007-05-10T12:18:54.32" level="INFO"> > > Total number of elements created=0. Elements dropped=0 > > </diagnostic> > > − > > <diagnostic time="2007-05-10T12:18:54.33" level="WARNING"> > > The element /DataSets..Sequence:-1360356532 was dropped 1 times > > because of > > missing required subelements or attributes: [u'DataSet'] > > </diagnostic> > > − > > <diagnostic time="2007-05-10T12:18:54.33" level="WARNING"> > > The element /DataSets/DataSet..Sequence:-1360356980 was dropped 1 > > times because > > of missing required subelements or attributes: [u'TechnicalContacts'] > > </diagnostic> > > </diagnostics> > > </response> > > > > ---------------------------------------------------------------------- > > --- > > This SF.net email is sponsored by DB2 Express > > Download DB2 Express C - the FREE version of DB2 express and take > > control of your XML. No limits. Just data. Click to get it now. > > http://sourceforge.net/powerbar/db2/ > > _______________________________________________ > > PyWrapper-devel mailing list > > PyW...@li... > > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > |
|
From: <m.d...@bg...> - 2007-05-11 16:20:46
|
Dear Shunde, the problem is found in the diagnostics here: "The element /DataSets/DataSet..Sequence:-1360356980 was dropped 1 times because of missing required subelements or attributes: [u'TechnicalContacts']" This means that ABCD defines a mandatory element TechnicalContacts that cannot be created. This usually results of missing mappings or NULL in the data of that specific record. Is the configuration tool externally visible? Then we (su...@bi...) could check your mappings directly online. best wishes -- Markus On 10.05.2007, at 04:55, Shunde Zhang wrote: > Hi all, > > I just installed pywrapper 3.1.0a, and set up a simple mapping to > ABCD 2.06. > > I now have mapped 8 concepts. and when I did a simple query, I got > the correct > number of records but not the content as below. I used Query Forms > to do this. > Could you please tell me if anything wrong with my config? Thanks a > lot. > > Cheers, > Shunde. > > > <response xsi:schemaLocation="http://rs.tdwg.org/tapir/1.0 > http://rs.tdwg.org/tapir/1.0/schema/tapir.xsd"> > − > <header> > − > <source sendtime="2007-05-10T12:14:09.34" > accesspoint="http://ristretto.sapac.edu.au:8088/pywrapper/pywrapper? > dsa=avh"> > <software version="3.1.0alpha" name="PyWrapper"/> > </source> > − > <custom> > <pyw:webapps pyw:location="http://ristretto.sapac.edu.au:8088/ > pywrapper"/> > </custom> > </header> > <!-- CONTENT START --> > − > <search> > <summary start="0" totalMatched="1"/> > </search> > <!-- CONTENT END --> > − > <diagnostics> > <diagnostic time="2007-05-10T12:18:21.15" level="INFO">Reading > request</diagnostic> > − > <diagnostic time="2007-05-10T12:18:21.21" level="INFO"> > Read model http://rs.tdwg.org/tapir/cs/abcd/2.06/model/abcd206.xml > </diagnostic> > − > <diagnostic time="2007-05-10T12:18:22.22" level="INFO"> > Parsed response structure contains 991 leaf concepts with type out > of 1663 nodes > in total > </diagnostic> > <diagnostic time="2007-05-10T12:18:22.91" level="INFO">Request fully > parsed</diagnostic> > <diagnostic time="2007-05-10T12:18:22.91" level="INFO">Init model > ACBD 2.06 with > datasource preferences</diagnostic> > − > <diagnostic time="2007-05-10T12:18:23.26" level="INFO"> > Model init finished. The model contains 1324 mapped concepts for > datasource > 'avh' out of 1324 model nodes mapped. > </diagnostic> > <diagnostic time="2007-05-10T12:18:23.26" level="INFO">Update model > structure > with datasource preferences</diagnostic> > − > <diagnostic time="2007-05-10T12:18:26.11" level="INFO"> > Executing SQL: "SELECT COUNT(DISTINCT SpecimenRecord.Id) FROM > SpecimenRecord AS > SpecimenRecord JOIN TaxonName AS TaxonName ON > SpecimenRecord.TaxonNameId = > TaxonName.Id WHERE TaxonName.FullScientificName LIKE 'Baccharis > pingraea' " > </diagnostic> > <diagnostic time="2007-05-10T12:18:41.22" level="INFO">DB query > finished</diagnostic> > − > <diagnostic time="2007-05-10T12:18:41.22" level="INFO"> > Ordering view by [TaxonName.FullScientificName(text)] > </diagnostic> > − > <diagnostic time="2007-05-10T12:18:41.23" level="INFO"> > Executing SQL: "SELECT DISTINCT SpecimenRecord.Id FROM > SpecimenRecord AS > SpecimenRecord JOIN TaxonName AS TaxonName ON > SpecimenRecord.TaxonNameId = > TaxonName.Id WHERE TaxonName.FullScientificName LIKE 'Baccharis > pingraea' ORDER > BY TaxonName.FullScientificName, SpecimenRecord.Id LIMIT 51 OFFSET 0" > </diagnostic> > <diagnostic time="2007-05-10T12:18:54.29" level="INFO">DB query > finished</diagnostic> > − > <diagnostic time="2007-05-10T12:18:54.29" level="INFO"> > Executing SQL: "SELECT TaxonName.FullScientificName, > SpecimenRecord.Id, > SpecimenRecord.SourceInstitutionID, SpecimenRecord.UnitId, > SpecimenRecord.DateLastEdited, TaxonName.Id, TaxonName.Genus, > TaxonName.Species, > CollectSite.Id, CollectSite.LongitudeDecimal, > CollectSite.LatitudeDecimal FROM > SpecimenRecord AS SpecimenRecord LEFT JOIN TaxonName AS TaxonName ON > SpecimenRecord.TaxonNameId = TaxonName.Id LEFT JOIN CollectSite AS > CollectSite > ON SpecimenRecord.CollectSiteId = CollectSite.Id WHERE > SpecimenRecord.Id IN > ('459464') ORDER BY TaxonName.FullScientificName " > </diagnostic> > <diagnostic time="2007-05-10T12:18:54.32" level="INFO">DB query > finished</diagnostic> > <diagnostic time="2007-05-10T12:18:54.32" level="INFO">Create XML > content from > recordset</diagnostic> > <diagnostic time="2007-05-10T12:18:54.32" level="INFO">Use > intelligent model > interpreter</diagnostic> > − > <diagnostic time="2007-05-10T12:18:54.32" level="WARNING"> > No content produced. Probably there were no matches for your query. > </diagnostic> > <diagnostic time="2007-05-10T12:18:54.32" level="INFO">Finished > creating XML > content</diagnostic> > − > <diagnostic time="2007-05-10T12:18:54.32" level="INFO"> > Total number of elements created=0. Elements dropped=0 > </diagnostic> > − > <diagnostic time="2007-05-10T12:18:54.33" level="WARNING"> > The element /DataSets..Sequence:-1360356532 was dropped 1 times > because of > missing required subelements or attributes: [u'DataSet'] > </diagnostic> > − > <diagnostic time="2007-05-10T12:18:54.33" level="WARNING"> > The element /DataSets/DataSet..Sequence:-1360356980 was dropped 1 > times because > of missing required subelements or attributes: [u'TechnicalContacts'] > </diagnostic> > </diagnostics> > </response> > > ---------------------------------------------------------------------- > --- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel |
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From: Shunde Z. <shu...@ad...> - 2007-05-10 02:56:43
|
Hi all, I just installed pywrapper 3.1.0a, and set up a simple mapping to ABCD 2.06. I now have mapped 8 concepts. and when I did a simple query, I got the correct number of records but not the content as below. I used Query Forms to do this. Could you please tell me if anything wrong with my config? Thanks a lot. Cheers, Shunde. <response xsi:schemaLocation="http://rs.tdwg.org/tapir/1.0 http://rs.tdwg.org/tapir/1.0/schema/tapir.xsd"> − <header> − <source sendtime="2007-05-10T12:14:09.34" accesspoint="http://ristretto.sapac.edu.au:8088/pywrapper/pywrapper?dsa=avh"> <software version="3.1.0alpha" name="PyWrapper"/> </source> − <custom> <pyw:webapps pyw:location="http://ristretto.sapac.edu.au:8088/pywrapper"/> </custom> </header> <!-- CONTENT START --> − <search> <summary start="0" totalMatched="1"/> </search> <!-- CONTENT END --> − <diagnostics> <diagnostic time="2007-05-10T12:18:21.15" level="INFO">Reading request</diagnostic> − <diagnostic time="2007-05-10T12:18:21.21" level="INFO"> Read model http://rs.tdwg.org/tapir/cs/abcd/2.06/model/abcd206.xml </diagnostic> − <diagnostic time="2007-05-10T12:18:22.22" level="INFO"> Parsed response structure contains 991 leaf concepts with type out of 1663 nodes in total </diagnostic> <diagnostic time="2007-05-10T12:18:22.91" level="INFO">Request fully parsed</diagnostic> <diagnostic time="2007-05-10T12:18:22.91" level="INFO">Init model ACBD 2.06 with datasource preferences</diagnostic> − <diagnostic time="2007-05-10T12:18:23.26" level="INFO"> Model init finished. The model contains 1324 mapped concepts for datasource 'avh' out of 1324 model nodes mapped. </diagnostic> <diagnostic time="2007-05-10T12:18:23.26" level="INFO">Update model structure with datasource preferences</diagnostic> − <diagnostic time="2007-05-10T12:18:26.11" level="INFO"> Executing SQL: "SELECT COUNT(DISTINCT SpecimenRecord.Id) FROM SpecimenRecord AS SpecimenRecord JOIN TaxonName AS TaxonName ON SpecimenRecord.TaxonNameId = TaxonName.Id WHERE TaxonName.FullScientificName LIKE 'Baccharis pingraea' " </diagnostic> <diagnostic time="2007-05-10T12:18:41.22" level="INFO">DB query finished</diagnostic> − <diagnostic time="2007-05-10T12:18:41.22" level="INFO"> Ordering view by [TaxonName.FullScientificName(text)] </diagnostic> − <diagnostic time="2007-05-10T12:18:41.23" level="INFO"> Executing SQL: "SELECT DISTINCT SpecimenRecord.Id FROM SpecimenRecord AS SpecimenRecord JOIN TaxonName AS TaxonName ON SpecimenRecord.TaxonNameId = TaxonName.Id WHERE TaxonName.FullScientificName LIKE 'Baccharis pingraea' ORDER BY TaxonName.FullScientificName, SpecimenRecord.Id LIMIT 51 OFFSET 0" </diagnostic> <diagnostic time="2007-05-10T12:18:54.29" level="INFO">DB query finished</diagnostic> − <diagnostic time="2007-05-10T12:18:54.29" level="INFO"> Executing SQL: "SELECT TaxonName.FullScientificName, SpecimenRecord.Id, SpecimenRecord.SourceInstitutionID, SpecimenRecord.UnitId, SpecimenRecord.DateLastEdited, TaxonName.Id, TaxonName.Genus, TaxonName.Species, CollectSite.Id, CollectSite.LongitudeDecimal, CollectSite.LatitudeDecimal FROM SpecimenRecord AS SpecimenRecord LEFT JOIN TaxonName AS TaxonName ON SpecimenRecord.TaxonNameId = TaxonName.Id LEFT JOIN CollectSite AS CollectSite ON SpecimenRecord.CollectSiteId = CollectSite.Id WHERE SpecimenRecord.Id IN ('459464') ORDER BY TaxonName.FullScientificName " </diagnostic> <diagnostic time="2007-05-10T12:18:54.32" level="INFO">DB query finished</diagnostic> <diagnostic time="2007-05-10T12:18:54.32" level="INFO">Create XML content from recordset</diagnostic> <diagnostic time="2007-05-10T12:18:54.32" level="INFO">Use intelligent model interpreter</diagnostic> − <diagnostic time="2007-05-10T12:18:54.32" level="WARNING"> No content produced. Probably there were no matches for your query. </diagnostic> <diagnostic time="2007-05-10T12:18:54.32" level="INFO">Finished creating XML content</diagnostic> − <diagnostic time="2007-05-10T12:18:54.32" level="INFO"> Total number of elements created=0. Elements dropped=0 </diagnostic> − <diagnostic time="2007-05-10T12:18:54.33" level="WARNING"> The element /DataSets..Sequence:-1360356532 was dropped 1 times because of missing required subelements or attributes: [u'DataSet'] </diagnostic> − <diagnostic time="2007-05-10T12:18:54.33" level="WARNING"> The element /DataSets/DataSet..Sequence:-1360356980 was dropped 1 times because of missing required subelements or attributes: [u'TechnicalContacts'] </diagnostic> </diagnostics> </response> |
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From: <m.d...@BG...> - 2007-04-21 23:32:57
|
Yes Marc, I think there will be only minor changes now so you could start if you = like. CherryPy is still there and I surely wont change that too soon. = Though I was thinking of creating a version with a pure PyWrapper = service running behind the Zope server - without the web configration = frontend. But these are true rumours for now... Markus -----Original Message----- From: pyw...@li... on behalf of Marc = Brugman Sent: Fri 4/20/2007 9:15 PM To: PyWrapper Developers mailing list Cc: ed...@et... Subject: Re: [PyWrapper-devel] PyWrapper 3.1.0alpha released Hi Markus, I guess this is our call to start documenting, isn't it? Are you still using CherryPy as I heard rumors that you wouldn't be using that anymore in the 3.1 version... Marc > Fernando, > good question, there aint any yet :) > > basically you do a new installation and then copy your previous > datasource configuration files (config/datasources/xxx into the new > installation. The only configuration file that changed from 3.0 to > 3.1 is the main server configuration config/config.ini So please use > the new default one and edit it to reflect your previous settings > (there are only 3 or 4 simple parameters in there you might have > changed). > > and please let me know if you run into any problems. > -- > Markus > > > > On 20.04.2007, at 18:33, Rojas, Fernando (CIAT) wrote: > >> Thank You Markus; >> >> Where can I find doumentation for make the UPGRADE from 3.0 to 3.1?? >> >> Thanks >> >> -----Original Message----- >> From: pyw...@li... >> [mailto:pyw...@li...] On Behalf Of >> Markus D=F6ring >> Sent: Friday, April 20, 2007 8:37 AM >> To: tdw...@li...; PyWrapper Developers mailing list; >> BiocaseSupport >> Subject: [PyWrapper-devel] PyWrapper 3.1.0alpha released >> >> Hi Tapiris, >> >> I've just released the alpha version of PyWrapper 3.1 that finally >> supports all the TAPIR protocol changes we agreed upon during the >> last developer meeting at GBIF. It now also runs with the latest >> version of Python2.5. Download & installation instructions can be >> found here as usual: >> >> http://trac.pywrapper.org/pywrapper/wiki/Downloads >> >> The final 3.1 release will add some minor bug fixes and most >> innovative a new LSID resolver written by Kevin Richards. The >> missing steps until the final 3.1 release can be found here: >> >> http://trac.pywrapper.org/pywrapper/milestone/3.1.0 >> http://trac.pywrapper.org/pywrapper/query? >> status=3Dnew&status=3Dassigned&status=3Dreopened&milestone=3D3.1.0 >> >> If you encounter any bugs in pywrapper, please issue a ticket on >> pywrapper.org If you prefer to write emails, feel free to send them >> to me or this mailing list. >> >> For those of you who can't be bothered to install a TAPIR service, >> here is a demo service running at the BGBM, please be kind: >> http://search.biocase.org/tapir/ >> >> Cheers >> Markus >> >> >> -- >> Markus D=F6ring >> Botanic Garden and Botanical Museum Berlin Dahlem, >> Dept. of Biodiversity Informatics >> K=F6nigin-Luise-Str. 6-8, D-14191 Berlin >> +49 (30) 83850-284 >> m.d...@bg... >> >> >> >> = ---------------------------------------------------------------------- >> --- >> This SF.net email is sponsored by DB2 Express Download DB2 Express >> C - the FREE version of DB2 express and take control of your XML. >> No limits. Just data. Click to get it now. >> http://sourceforge.net/powerbar/db2/ >> _______________________________________________ >> PyWrapper-devel mailing list >> PyW...@li... >> https://lists.sourceforge.net/lists/listinfo/pywrapper-devel >> >> = ---------------------------------------------------------------------- >> --- >> This SF.net email is sponsored by DB2 Express >> Download DB2 Express C - the FREE version of DB2 express and take >> control of your XML. No limits. Just data. Click to get it now. >> http://sourceforge.net/powerbar/db2/ >> _______________________________________________ >> PyWrapper-devel mailing list >> PyW...@li... >> https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > > > = -------------------------------------------------------------------------= > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > > -------------------------------------------------------------------------= This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ PyWrapper-devel mailing list PyW...@li... https://lists.sourceforge.net/lists/listinfo/pywrapper-devel |
|
From: Marc B. <mbr...@et...> - 2007-04-20 19:16:05
|
Hi Markus, I guess this is our call to start documenting, isn't it? Are you still using CherryPy as I heard rumors that you wouldn't be using that anymore in the 3.1 version... Marc > Fernando, > good question, there aint any yet :) > > basically you do a new installation and then copy your previous > datasource configuration files (config/datasources/xxx into the new > installation. The only configuration file that changed from 3.0 to > 3.1 is the main server configuration config/config.ini So please use > the new default one and edit it to reflect your previous settings > (there are only 3 or 4 simple parameters in there you might have > changed). > > and please let me know if you run into any problems. > -- > Markus > > > > On 20.04.2007, at 18:33, Rojas, Fernando (CIAT) wrote: > >> Thank You Markus; >> >> Where can I find doumentation for make the UPGRADE from 3.0 to 3.1?? >> >> Thanks >> >> -----Original Message----- >> From: pyw...@li... >> [mailto:pyw...@li...] On Behalf Of >> Markus Döring >> Sent: Friday, April 20, 2007 8:37 AM >> To: tdw...@li...; PyWrapper Developers mailing list; >> BiocaseSupport >> Subject: [PyWrapper-devel] PyWrapper 3.1.0alpha released >> >> Hi Tapiris, >> >> I've just released the alpha version of PyWrapper 3.1 that finally >> supports all the TAPIR protocol changes we agreed upon during the >> last developer meeting at GBIF. It now also runs with the latest >> version of Python2.5. Download & installation instructions can be >> found here as usual: >> >> http://trac.pywrapper.org/pywrapper/wiki/Downloads >> >> The final 3.1 release will add some minor bug fixes and most >> innovative a new LSID resolver written by Kevin Richards. The >> missing steps until the final 3.1 release can be found here: >> >> http://trac.pywrapper.org/pywrapper/milestone/3.1.0 >> http://trac.pywrapper.org/pywrapper/query? >> status=new&status=assigned&status=reopened&milestone=3.1.0 >> >> If you encounter any bugs in pywrapper, please issue a ticket on >> pywrapper.org If you prefer to write emails, feel free to send them >> to me or this mailing list. >> >> For those of you who can't be bothered to install a TAPIR service, >> here is a demo service running at the BGBM, please be kind: >> http://search.biocase.org/tapir/ >> >> Cheers >> Markus >> >> >> -- >> Markus Döring >> Botanic Garden and Botanical Museum Berlin Dahlem, >> Dept. of Biodiversity Informatics >> Königin-Luise-Str. 6-8, D-14191 Berlin >> +49 (30) 83850-284 >> m.d...@bg... >> >> >> >> ---------------------------------------------------------------------- >> --- >> This SF.net email is sponsored by DB2 Express Download DB2 Express >> C - the FREE version of DB2 express and take control of your XML. >> No limits. Just data. Click to get it now. >> http://sourceforge.net/powerbar/db2/ >> _______________________________________________ >> PyWrapper-devel mailing list >> PyW...@li... >> https://lists.sourceforge.net/lists/listinfo/pywrapper-devel >> >> ---------------------------------------------------------------------- >> --- >> This SF.net email is sponsored by DB2 Express >> Download DB2 Express C - the FREE version of DB2 express and take >> control of your XML. No limits. Just data. Click to get it now. >> http://sourceforge.net/powerbar/db2/ >> _______________________________________________ >> PyWrapper-devel mailing list >> PyW...@li... >> https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > > |
|
From: <m.d...@bg...> - 2007-04-20 16:58:25
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Fernando, good question, there aint any yet :) basically you do a new installation and then copy your previous =20 datasource configuration files (config/datasources/xxx into the new =20 installation. The only configuration file that changed from 3.0 to =20 3.1 is the main server configuration config/config.ini So please use =20 the new default one and edit it to reflect your previous settings =20 (there are only 3 or 4 simple parameters in there you might have =20 changed). and please let me know if you run into any problems. -- Markus On 20.04.2007, at 18:33, Rojas, Fernando (CIAT) wrote: > Thank You Markus; > > Where can I find doumentation for make the UPGRADE from 3.0 to 3.1?? > > Thanks > > -----Original Message----- > From: pyw...@li... =20 > [mailto:pyw...@li...] On Behalf Of =20= > Markus D=F6ring > Sent: Friday, April 20, 2007 8:37 AM > To: tdw...@li...; PyWrapper Developers mailing list; =20 > BiocaseSupport > Subject: [PyWrapper-devel] PyWrapper 3.1.0alpha released > > Hi Tapiris, > > I've just released the alpha version of PyWrapper 3.1 that finally =20 > supports all the TAPIR protocol changes we agreed upon during the =20 > last developer meeting at GBIF. It now also runs with the latest =20 > version of Python2.5. Download & installation instructions can be =20 > found here as usual: > > http://trac.pywrapper.org/pywrapper/wiki/Downloads > > The final 3.1 release will add some minor bug fixes and most =20 > innovative a new LSID resolver written by Kevin Richards. The =20 > missing steps until the final 3.1 release can be found here: > > http://trac.pywrapper.org/pywrapper/milestone/3.1.0 > http://trac.pywrapper.org/pywrapper/query? > status=3Dnew&status=3Dassigned&status=3Dreopened&milestone=3D3.1.0 > > If you encounter any bugs in pywrapper, please issue a ticket on =20 > pywrapper.org If you prefer to write emails, feel free to send them =20= > to me or this mailing list. > > For those of you who can't be bothered to install a TAPIR service, =20 > here is a demo service running at the BGBM, please be kind: > http://search.biocase.org/tapir/ > > Cheers > Markus > > > -- > Markus D=F6ring > Botanic Garden and Botanical Museum Berlin Dahlem, > Dept. of Biodiversity Informatics > K=F6nigin-Luise-Str. 6-8, D-14191 Berlin > +49 (30) 83850-284 > m.d...@bg... > > > > ----------------------------------------------------------------------=20= > --- > This SF.net email is sponsored by DB2 Express Download DB2 Express =20 > C - the FREE version of DB2 express and take control of your XML. =20 > No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel > > ----------------------------------------------------------------------=20= > --- > This SF.net email is sponsored by DB2 Express > Download DB2 Express C - the FREE version of DB2 express and take > control of your XML. No limits. Just data. Click to get it now. > http://sourceforge.net/powerbar/db2/ > _______________________________________________ > PyWrapper-devel mailing list > PyW...@li... > https://lists.sourceforge.net/lists/listinfo/pywrapper-devel |
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From: Rojas, F. \(CIAT\) <F....@CG...> - 2007-04-20 16:33:45
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Thank You Markus;=20 Where can I find doumentation for make the UPGRADE from 3.0 to 3.1?? Thanks=20 -----Original Message----- From: pyw...@li... = [mailto:pyw...@li...] On Behalf Of = Markus D=F6ring Sent: Friday, April 20, 2007 8:37 AM To: tdw...@li...; PyWrapper Developers mailing list; = BiocaseSupport Subject: [PyWrapper-devel] PyWrapper 3.1.0alpha released Hi Tapiris, I've just released the alpha version of PyWrapper 3.1 that finally = supports all the TAPIR protocol changes we agreed upon during the last = developer meeting at GBIF. It now also runs with the latest version of = Python2.5. Download & installation instructions can be found here as = usual: http://trac.pywrapper.org/pywrapper/wiki/Downloads The final 3.1 release will add some minor bug fixes and most innovative = a new LSID resolver written by Kevin Richards. The missing steps until = the final 3.1 release can be found here: http://trac.pywrapper.org/pywrapper/milestone/3.1.0 http://trac.pywrapper.org/pywrapper/query?=20 status=3Dnew&status=3Dassigned&status=3Dreopened&milestone=3D3.1.0 If you encounter any bugs in pywrapper, please issue a ticket on = pywrapper.org If you prefer to write emails, feel free to send them to = me or this mailing list. For those of you who can't be bothered to install a TAPIR service, here = is a demo service running at the BGBM, please be kind: http://search.biocase.org/tapir/ Cheers Markus -- Markus D=F6ring Botanic Garden and Botanical Museum Berlin Dahlem, Dept. of Biodiversity Informatics K=F6nigin-Luise-Str. 6-8, D-14191 Berlin +49 (30) 83850-284 m.d...@bg... -------------------------------------------------------------------------= This SF.net email is sponsored by DB2 Express Download DB2 Express C - = the FREE version of DB2 express and take control of your XML. No limits. = Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ PyWrapper-devel mailing list PyW...@li... https://lists.sourceforge.net/lists/listinfo/pywrapper-devel |
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