Re: [PyWrapper-devel] MOBY info

SourceForge Headquarters 225 Broadway Suite 1600 San Diego, CA 92101 +1 (858) 422-6466

thats right.
the summary section is at the end of the model result section cause =
otherwise pywrapper would have to know the numbers in advance which =
means keeping it in memory and no streaming. thats something we wanted =
to avoid when designing tapir.
=20
markus
=20

	-----Original Message-----
	From: pyw...@li... =
[mailto:pyw...@li...] On Behalf Of =
Skofic A. Milko (IPGRI)
	Sent: Donnerstag, 16. November 2006 00:56
	To: Javier privat
	Cc: PyWrapper Developers mailing list
	Subject: Re: [PyWrapper-devel] MOBY info
=09
=09
	I think a count can be very useful, like getting the number of elements =
conforming to some condition. Also, it can be useful to have an idea of =
how many elements one must get, then use that number when setting the =
secondary paging parameters.

	I agree that search is enough for now, that covers most of the needs.

		The count operation is not available for use with biomoby. There is no =
way in TAPIR, apart of using XSLT on top of it, to modify the response =
dynamically of a search result that has the count set to true.

	Does this mean that in an output model you don't have access to the =
response structure of a TAPIR result? for instance to this:
	<summary start=3D"0" totalReturned=3D"0" totalMatched=3D"25008" />=20

	Thanks!

	Milko

	On Nov 16, 2006, at 0:39 , Javier de la Torre wrote:

		Hi Milko,=20

		As you correctly said the moby2TapirFilterXslt just transform a =
biomoby message into a tapir filter, just the filter! not a full TAPIR =
request. Take a look at the XSLT, is pretty simple.

		As it is implemented right now the only operations that can be done is =
a search...

		I implemented it like because with search is the only operation that =
you can do dynamic outputmodels and the only thing that it is needed to =
trasnform is the filter.

		The count operation is not available for use with biomoby. There is no =
way in TAPIR, apart of using XSLT on top of it, to modify the response =
dynamically of a search result that has the count set to true.

		So, again, it is not possible to create biomoby services in pywrapper =
that uses a COUNT. What kind of services do you envision to do this? If =
you really need it then we can think about other possibilities but I =
dont know if this is necessary...

		Cheers.

		On 15/11/2006, at 19:50, Skofic A. Milko (IPGRI) wrote:

			Javier, podr=EDas decirme cuando me podr=EDas dedicar un poco de =
tiempo para comprender unas cosas de como implementas el MOBY?=20

			Te indico las cosas que no me son claras:

			El  <moby2TapirFilterXslt> que hace exactamente, transforma el input =
Moby mensaje en el filtro te b=FAsqueda TAPIR? Si eso es la verdad, =
solamente se necessita crear la parte <filter> de la b=FAsqueda, lo otro =
es automatico?

			Si yo quer=EDa hacer un MOBY service que me da el COUNT de cuantos =
registros ha encontrado como puedo hacer? El problema es que esta =
informaci=F3n me la devuelve el protocolo TAPIR, no el esquema que se =
utiliza.

			Yo har=EDa esta query;

			<?xml version=3D'1.0' encoding=3D'UTF-8'?>
			<request>
			<header>
			<source =
accesspoint=3D"http://tapir.grinfo.net:8080/pywrapper/pywrapper?dsa=3DEUR=
ISCO" sendtime=3D"2006-11-13T12:54:29.43"/>
			</header>
			<search count=3D'true' start=3D'0' limit=3D'0'>
			<externalOutputModel =
location=3D"http://eurisco.ecpgr.org/models/output/MCPD_EURISCO_1.00.xml"=
/>
			<filter>
			<like>
			<concept id=3D'GENUS@mcpd_eurisco_100' />
			<literal value=3D'B*' />
			</like>
			</filter>
			<orderBy>
			<concept id=3D'ACCENUMB@mcpd_eurisco_100' />
			</orderBy>
			</search>
			</request>

			Y TAPIR me devolver=EDa:

			<?xml version=3D"1.0" encoding=3D"utf-8"?>
			<response xmlns=3D"http://rs.tdwg.org/tapir/1.0">
			  <header>
			    <source sendtime=3D"2006-11-15T19:26:50.57" =
accesspoint=3D"http://tapir.grinfo.net:8080/pywrapper/pywrapper?dsa=3DEUR=
ISCO_TEST">
			      <software version=3D"2.1" name=3D"PyWrapper" />
			    </source>
			  </header>
			  <!-- CONTENT START -->
			  <search>
			    <summary start=3D"0" totalReturned=3D"0" totalMatched=3D"25008" =
/>
			  </search>
			  <!-- CONTENT END -->
			  <diagnostics></diagnostics>
			</response>

			Ent=F3nces tendr=EDa que hacer un output model con la estructura del =
<response> mapeado a el MOBY type?

			Ciao!

			Milko

=09
=09
	Milko A. Skofic (IPGRI)
	International Plant Genetic Resources Institute
	Via dei Tre Denari, 472/a
	00057 Maccarese (RM)
	ITALY
	E-mail: m.s...@cg...
	Tel: +30 06 6118286