Re: [Pytom-mail] Running time for template matching of tutorial dataset

[Junichi K. <kis...@gm...>]

Hi, everyone,

My trouble was solved.
I had mistake on the settings of MPI.

As the result, the calculation of template matching using tutorial dataset
took about 1 hr.

Thanks,

Jun Kishikawa

2018年7月18日(水) 10:32 Junichi Kishikawa <kis...@gm...>:

> Hi everyone,
>
> I'm a beginner for cryo-tomography and subtomogram.
> I just installed PyTom 0.971 on CentOS7.
>
> Now, I'm trying to reconstruct using tutorial dataset.
> The tomogram reconstruction was well done.
> But, template matching using the reconstructed tomogram takes much long
> time (>10 h) and don't finish yet.
>
> How long dose it take using tutorial dataset ?
> My environment is CentOS7, Intel(R) Xeon(R) CPU E5-2620 v4 @ 2.10GHz.
> The job is running with 4 processes.
>
> Thanks.
>
> Jun Kishikawa
>


-- 
------------------------------------------------------------------------------------
岸川 淳一 （情報工学博士）

〒603-8555 京都府京都市北区上賀茂本山
京都産業大学 総合生命科学部 生命システム学科
生体膜エネルギー研究室 研究助教

TEL; 075-705-3221
FAX; 075-705-1914
e-mail; kis...@cc...
URL; http://www.cc.kyoto-su.ac.jp/~yokoken/index-j.htm
------------------------------------------------------------------------------------