Re: [Pytom-mail] "cat: Command not found."

[Haixin S. <su...@ho...>]

Hi Dustin


You are right and I have just fixed it.


Thank you very much!


Haixin

________________________________
From: Dustin Morado <dus...@gm...>
Sent: Friday, September 29, 2017 12:22 PM
To: Haixin Sui
Cc: Thomas Hrabe; pyt...@li...
Subject: Re: [Pytom-mail] "cat: Command not found."

Hi Haixin,

ipytom and pytom are actually just CSH scripts to setup
your environment and then start (i)pytom. If you use bash
or another shell, then perhaps csh is not setup on your
computer and the PATH environment variable does not include
/usr/bin which is where cat lives.

HTH,
Dustin Morado
John Briggs Group
MRC LMB

___

Cheers,
Dustin M.


On Fri, Sep 29, 2017 at 4:24 PM, Haixin Sui <su...@ho...<mailto:su...@ho...>> wrote:

Hi

I reinstalled pytom.  When I start ipytom, the following message showed up "cat: Command not found". Is it an error? What does this error indicate?

---------------------
/usr/local/pytom/pytomc$ ipytom
cat: Command not found.
Python 2.7.13 | packaged by conda-forge | (default, May  2 2017, 12:48:11)
Type "copyright", "credits" or "license" for more information.

IPython 5.4.1 -- An enhanced Interactive Python.
?         -> Introduction and overview of IPython's features.
%quickref -> Quick reference.
help      -> Python's own help system.
object?   -> Details about 'object', use 'object??' for extra details.
--------------------


Haixin


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