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Re: [Pytom-mail] Error message when creating job file
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From: Kenny C. <kec...@gm...> - 2017-07-27 18:23:06
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Dear Thomas, Thank you for your advice! I will try command line. Sincerely yours, Kenny 2017-07-26 11:46 GMT-04:00 Thomas Hrabe <th...@gm...>: > Hi Kenny, Haixin, > > Thank you for the trace. > > The user interface is old and written at times where I must admit had > little experience with web technologies. > It needs a major overhaul - anyone interested :D …? > > I suggest to use the command line tools to create an alignment job instead. > > Please try > > pytom/bin/alignJob.py > > Please let us know if it works. > > Cheers, > Thomas > > Am 24.07.2017 um 16:48 schrieb Haixin Sui <su...@ho...>: > > Hi Tom, > > Thank you very much for your response. > > I tried to repeat Kenny's test. The full stack trace and the screenshots, > before and after the error message showed up, have been been included in > the end of this email. > > What we did was to generate a new Alignment job with the GI. This is the > first job we have tested, i.e. no previous reconstruction or localization > was carried out with pytom. We assumed we could start with running an > Alignment job. > > After I input the parameters and files. When clicked on the green button > "create Job", a window popped up showing" InvildStateError: XMLHttpRequest > state must not be LOADING or DONE." > It is where we stopped. > > Please help to identify the possible reasons of the error message. > > Thank you > > Haixin > > > The full stack trace list: > ================== > vb@dalian:/DvbWork1/rv1265rec/KM_20161216_rec/Pytom_test$ pytom > /usr/local/pytom/frontend/pytomServer.py -h "dalian" & > [1] 26708 > vb@dalian:/DvbWork1/rv1265rec/KM_20161216_rec/Pytom_test$ cat: Command > not found. > ------------------------------------------------------------ > ---------------------------- > Starting Pytom Webserver on hostname dalian and port 8080 > Paste the following line into your browser to start > http://dalian:8080 > Starting browser: firefox > > ------------------------------------------------------------ > ---------------------------- > firefox http://dalian:8080/index.html > 127.0.0.1 - - [24/Jul/2017 09:40:27] "GET / HTTP/1.1" 200 - > /usr/local/pytom/frontend/html// > /usr/local/pytom/frontend/html/javascript/javascript/functions.js > 127.0.0.1 - - [24/Jul/2017 09:40:27] "GET /javascript/functions.js > HTTP/1.1" 200 - > /usr/local/pytom/frontend/html/javascript/javascript/functions.js > /usr/local/pytom/frontend/html/javascript/javascript/ > reconstructionFunctions.js > 127.0.0.1 - - [24/Jul/2017 09:40:27] "GET /javascript/reconstructionFunctions.js > HTTP/1.1" 200 - > /usr/local/pytom/frontend/html/javascript/javascript/ > reconstructionFunctions.js > /usr/local/pytom/frontend/html/javascript/javascript/mcoEXMXFunctions.js > 127.0.0.1 - - [24/Jul/2017 09:40:27] "GET /javascript/mcoEXMXFunctions.js > HTTP/1.1" 200 - > /usr/local/pytom/frontend/html/javascript/javascript/mcoEXMXFunctions.js > /usr/local/pytom/frontend/html/javascript/javascript/ > localizationFunctions.js > 127.0.0.1 - - [24/Jul/2017 09:40:27] "GET /javascript/localizationFunctions.js > HTTP/1.1" 200 - > /usr/local/pytom/frontend/html/javascript/javascript/ > localizationFunctions.js > /usr/local/pytom/frontend/html/javascript/javascript/alignmentFunctions.js > 127.0.0.1 - - [24/Jul/2017 09:40:27] "GET /javascript/alignmentFunctions.js > HTTP/1.1" 200 - > /usr/local/pytom/frontend/html/javascript/javascript/alignmentFunctions.js > /usr/local/pytom/frontend/html/javascript/javascript/mcoACFunctions.js > 127.0.0.1 - - [24/Jul/2017 09:40:27] "GET /javascript/mcoACFunctions.js > HTTP/1.1" 200 - > /usr/local/pytom/frontend/html/javascript/javascript/mcoACFunctions.js > /usr/local/pytom/frontend/html/javascript/javascript/cookies.js > 127.0.0.1 - - [24/Jul/2017 09:40:27] "GET /javascript/cookies.js HTTP/1.1" > 200 - > /usr/local/pytom/frontend/html/javascript/javascript/cookies.js > /usr/local/pytom/frontend/html/images/images/pytom_logo.png > 127.0.0.1 - - [24/Jul/2017 09:40:27] "GET /images/pytom_logo.png HTTP/1.1" > 200 - > /usr/local/pytom/frontend/html/images/images/pytom_logo.png > /usr/local/pytom/frontend/html/css/css/pytomMainCSS.css > 127.0.0.1 - - [24/Jul/2017 09:40:27] "GET /css/pytomMainCSS.css HTTP/1.1" > 200 - > /usr/local/pytom/frontend/html/css/css/pytomMainCSS.css > /usr/local/pytom/frontend/html/images/images/pytom_logo.png > 127.0.0.1 - - [24/Jul/2017 09:40:27] "GET /images/pytom_logo.png HTTP/1.1" > 200 - > /usr/local/pytom/frontend/html/images/images/pytom_logo.png > /usr/local/pytom/frontend/html/css/css/cssMainMenu.css > 127.0.0.1 - - [24/Jul/2017 09:40:27] "GET /css/cssMainMenu.css HTTP/1.1" > 200 - > /usr/local/pytom/frontend/html/css/css/cssMainMenu.css > /usr/local/pytom/frontend/html/../serverpages/apiDocumentationURL.py > 127.0.0.1 - - [24/Jul/2017 09:40:27] "GET /apiDocumentationURL.py > HTTP/1.1" 200 - > /usr/local/pytom/frontend/html/../serverpages/apiDocumentationURL.py > /usr/local/pytom/frontend/html/pages/pages/newAlignmentJob.html > 127.0.0.1 - - [24/Jul/2017 09:40:34] "GET /pages/newAlignmentJob.html > HTTP/1.1" 200 - > /usr/local/pytom/frontend/html/pages/pages/newAlignmentJob.html > /usr/local/pytom/frontend/html/../serverpages/loadParticleList.py > 127.0.0.1 - - [24/Jul/2017 09:41:27] "GET /loadParticleList.py?DIR=/ > DvbWork1/rv1265rec/KM_20161216_rec/Pytom_test/KM_NS_A_sybvol HTTP/1.1" > 200 - > /usr/local/pytom/frontend/html/../serverpages/loadParticleList.py > /usr/local/pytom/frontend/html/../serverpages/imageSlice.py > 127.0.0.1 - - [24/Jul/2017 09:44:24] "GET /imageSlice.py?File=/DvbWork1/ > rv1265rec/KM_20161216_rec/Pytom_test/Reference/Reference.mrc HTTP/1.1" > 200 - > /usr/local/pytom/frontend/html/../serverpages/imageSlice.py > /usr/local/pytom/frontend/html/images/DvbWork1/rv1265rec/KM_20161216_rec/ > Pytom_test/Reference/Reference.png > 127.0.0.1 - - [24/Jul/2017 09:44:24] "GET /DvbWork1/rv1265rec/KM_ > 20161216_rec/Pytom_test/Reference/Reference.png HTTP/1.1" 200 - > /usr/local/pytom/frontend/html/images/DvbWork1/rv1265rec/KM_20161216_rec/ > Pytom_test/Reference/Reference.png > /usr/local/pytom/frontend/html/../serverpages/imageSlice.py > 127.0.0.1 - - [24/Jul/2017 09:44:57] "GET /imageSlice.py?File=/DvbWork1/ > rv1265rec/KM_20161216_rec/Pytom_test/Mask/Mask.mrc HTTP/1.1" 200 - > /usr/local/pytom/frontend/html/../serverpages/imageSlice.py > /usr/local/pytom/frontend/html/images/DvbWork1/rv1265rec/KM_20161216_rec/ > Pytom_test/Mask/Mask.png > 127.0.0.1 - - [24/Jul/2017 09:44:57] "GET /DvbWork1/rv1265rec/KM_ > 20161216_rec/Pytom_test/Mask/Mask.png HTTP/1.1" 200 - > /usr/local/pytom/frontend/html/images/DvbWork1/rv1265rec/KM_20161216_rec/ > Pytom_test/Mask/Mask.png > /usr/local/pytom/frontend/html/../serverpages/imageSlice.py > 127.0.0.1 - - [24/Jul/2017 09:46:58] "GET /imageSlice.py?File=/DvbWork1/ > rv1265rec/KM_20161216_rec/Pytom_test/Mask/rmask125_r70G2.mrc HTTP/1.1" > 200 - > /usr/local/pytom/frontend/html/../serverpages/imageSlice.py > /usr/local/pytom/frontend/html/images/DvbWork1/rv1265rec/KM_20161216_rec/ > Pytom_test/Mask/rmask125_r70G2.png > 127.0.0.1 - - [24/Jul/2017 09:46:58] "GET /DvbWork1/rv1265rec/KM_ > 20161216_rec/Pytom_test/Mask/rmask125_r70G2.png HTTP/1.1" 200 - > /usr/local/pytom/frontend/html/images/DvbWork1/rv1265rec/KM_20161216_rec/ > Pytom_test/Mask/rmask125_r70G2.png > > ------------ > The above has completed listing of the full stack trace. > > Before we clicked the "Create Job", the screen-shot is following. (does it > look right?) > > <pastedImage.png> > > After I clicked on the green "Create Job", the screen-shot is following. > When it happened, no additional information was triggers in the stack > trace window. > > > <pastedImage.png> > > ------------------------------ > *From:* Thomas Hrabe <th...@gm...> > *Sent:* Monday, July 24, 2017 8:52 AM > *To:* Kenny Chen > *Cc:* pyt...@li... > *Subject:* Re: [Pytom-mail] Error message when creating job file > > Hi Kenny, > > Thank you for the error report. > Could you please send the full stack trace to identify your problem in > more detail? > > Thanks, > Thomas > > > On Jul 20, 2017, at 11:24 PM, Kenny Chen <kec...@gm...> wrote: > > > > Hi, > > > > I get an error message "InvalidStateError: XMLHttpRequest state must not > be LOADING or DONE." when I create the alignment job xml file from the web > server front end. > > > > I am using firefox. > > > > > > > > Thank you for your help! > > > > > > Kenny > > ------------------------------------------------------------ > ------------------ > > Check out the vibrant tech community on one of the world's most > > engaging tech sites, Slashdot.org! http://sdm.link/ > slashdot_______________________________________________ > > Pytom-mail mailing list > > Pyt...@li... > > https://lists.sourceforge.net/lists/listinfo/pytom-mail > > > ------------------------------------------------------------ > ------------------ > Check out the vibrant tech community on one of the world's most > engaging tech sites, Slashdot.org <http://slashdot.org/>! http:// > sdm.link/slashdot > _______________________________________________ > Pytom-mail mailing list > Pyt...@li... > https://lists.sourceforge.net/lists/listinfo/pytom-mail > > > |
