Re: [Pytom-mail] ExtendedInplaneSampling

[Dustin M. <dus...@gm...>]

Hey Thomas,

Sorry I didn't want to be overly verbose in case it was something simple. Here were the changes I made so far:

    +++ /home/dustin/pytom_0.971/angles/localSampling.py
    --- /share/apps/pytom/angles/localSampling.py
    290c290
    < class ExtendedInplaneSampling(AngleList):
    ---
    > class ExtendedInplaneSampling(AngleList, LocalSampling):
    438c438
    <         if angleList_element.get('ShellIncrement') is None:
    ---
    >         if angleListElement.get('ShellIncrement') is None:


The change at 290 was to get rid of an error with the super call in nextRotation at line 452:

    super(type, obj): obj must be an instance or subtype of type

The change at 438 was fixing what looked to be typo. 

But after making both of these changes I still get another error and I gave up:

    >>>>>>>>> MPI rank: 0, Iteration: 0
    >>>>>>>>> Aligning Even ....
    This is a virtual class and thus virtual member function
    <class 'pytom.angles.localSampling.ExtendedInplaneSampling'>
    --------------------------------------------------------------------------
    MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD
    with errorcode 0.

    NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
    You may or may not see output from other processes, depending on
    exactly when Open MPI kills them.
    --------------------------------------------------------------------------
    'NoneType' object has no attribute '__getitem__'

Thanks for the help.

--
Cheers,
Dustin
> 
> Hi Dustin,
> 
> can you please be more specific about your problems?
> 
> Thanks,
> Thomas
> 
> 
>> On Jun 21, 2016, at 8:27 AM, Dustin Morado <dus...@gm...> wrote:
>> 
>> Hi all,
>> 
>> Does anybody have any experience using ExtendedInplaneSampling in GLocal alignment jobs? I'm trying to get a job to run with it and running into a few problems. Just want to check if I'm missing something simple or obvious.
>> 
>> --
>> Cheers,
>> Dustin Morado
>> 
>> 
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