Re: [Pytom-mail] Tutorial files

[Kanika K. <kk...@uc...>]

Hi,

I used the following command as per the tutorial.

reconstructTomogram.py --tiltSeriesPath
/home/kkhanna/Desktop/pytom-tutorial/RibosFromLysate/projections/
--tiltSeriesPrefix tomo01_sorted --firstIndex 1 --lastIndex 41
--referenceIndiex 21 --markerFile
/home/kkhanna/Desktop/pytom-tutorial/RibosFromLysate/projections/markfile_temp.mark
--referenceMarkerIndex 1 -- projectionTargets ./alignedProjections/tomo01
--projectionBinning 4 --lowpassFilter 0.5 --tomogramFile tomogram.em
--filetype em --tomogramSizeX 512 --tomogramSizeY 512 --tomogramSizeZ 128
--reconstructionCenterX 0 --reconstructionCenterY 0 reconstructCenterZ 0


On Wed, Feb 24, 2016 at 10:17 AM, Thomas Hrabe <th...@gm...> wrote:

> Hi Kanika,
>
> can you please send the full terminal command and output you processed?
>
> Thomas
>
> On Feb 24, 2016, at 10:13 AM, Kanika Khanna <kk...@uc...> wrote:
>
> Hi,
>
> I downloaded the tutorial file.
>
> I have been trying to use it to reconstruct the tutorial data and I get
> the following error when I run the script reconstructTomo.
>
>
>
> *sys.version_info(major=2, minor=7, micro=5, releaselevel='final',
> serial=0)option --tiltSeriesPath not recognized*
>
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