Re: [Pytom-mail] Error creating alignment job in web server

[Dustin M. <dus...@gm...>]

Thomas,

Sorry for the delay. I made the hot fix and now get this error:

Error: local variable 'fscCriterion' referenced before assignment

Dustin

> On Feb 3, 2016, at 1:23 PM, Thomas Hrabe <th...@gm...> wrote:
> 
> Dustin,
> 
> as a hotfix you can try replacing line 126 in pytom.frontend.createAlignmentJob.py
> with this line:
> 
> angles = LocalSampling(shells=shells,increment=startIncrement)
> 
> Please try and let me know if it worked. I will test it here too and update in the next release.
> 
> Thomas
> 
> 
>> On Feb 3, 2016, at 10:43 AM, Thomas Hrabe <th...@gm...> wrote:
>> 
>> Hi Dustin,
>> 
>> thank you for the bug report. 
>> The web-interface was not touched in recently and my first guess is that a refactoring was not propagated into that part.
>> I’ll check.
>> 
>> You are right about the interface for non experts, but since the CLI works alright please show your lab-mates how to use it meanwhile.
>> 
>> Thanks,
>> Thomas
>> 
>> 
>>> On Feb 3, 2016, at 8:29 AM, Dustin Morado <dus...@gm...> wrote:
>>> 
>>> Hi all,
>>> 
>>> In case it is of any use, here is also the output from pytomServer. It’s interesting the only error shows up when it was run on Firefox and there doesn’t appear to be any feedback from the errors on Chrome and Safari.
>>> 
>>> and I just noticed that it’s calling an older version of pytom. I have pytom 0.963 in /opt/pytom, and pytom 0.97 in /opt/pytom_0.97, but haven’t had any other problems running jobs from the command line with this setup.
>>> 
>>> —
>>> Dustin
>>> 
>>> <pytomServer.out>
>>> 
>>>> Message: 1
>>>> Date: Wed, 3 Feb 2016 10:12:08 -0600
>>>> From: Dustin Morado <dus...@gm...>
>>>> Subject: [Pytom-mail] Error creating alignment job in web server
>>>> To: pyt...@li...
>>>> Message-ID: <108...@gm...>
>>>> Content-Type: text/plain; charset=utf-8
>>>> 
>>>> Hi al,
>>>> 
>>>> I get the following error when trying to create an alignment job from the web server front end.
>>>> I am using pytom 0.97 and the create job button is green in the interface.
>>>> 
>>>> invalidStateError: Failed to execute 'overrideMimeType' on 'XMLHttpRequest?: 
>>>> Mime Type cannot be overridden when the state is LOADING or DONE.
>>>> 
>>>> I?m running the web server on a remote station and accessing it through port forwarding to my laptop.
>>>> I?m using Google Chrome.
>>>> 
>>>> If I use Safari in the same manner I get this error instead:
>>>> Error: InvalidStateError: DOM Exception 11
>>>> 
>>>> If I use Firefox I get this error:
>>>> Error: __init__() got an unexpected keyword argument ?shellIncrement'
>>>> 
>>>> I?m OK setting up jobs myself through the command line, but GUI access would be preferred for the less computer savvy in my lab.
>>>> 
>>>> Thanks for the help!
>>>> 
>>>> ?
>>>> Cheers,
>>>> Dustin Morado
>>> 
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>