Re: [Pytom-mail] Compilation Problems

[Thomas H. <th...@gm...>]

Hi Cannon,

good to hear you are installing pytom!
I have no experience with Fedora, but in should generally work.

1. In order to locate your mpi++, try using the yum package manager. They may be called differently on your system? Whats is in the /usr/lib64/openmpi/bin folder ?
2. Open the compile.py file and disable the printout by setting ll 197,198,199 all three to true. That will limit the installation to the pytom core. Once the pytom core is compiled, you can come back and compile the remaining parts. 
3. Can you please list all found / not found packages the compile.py is listing?

Good luck,
Thomas

> On Jun 25, 2015, at 9:26 AM, Cannon Lewis <wc...@ri...> wrote:
> 
> Hello,
> 
> I am an undergraduate summer researcher in Wah Chiu's lab at Baylor College of Medicine. I've been trying to compile PyTom on my local Fedora 21 machine, and I've run into some issues. I've installed all of the required libraries via Yum and provided the appropriate directories to compile.py, but when I execute the command it simply prints out a bunch of debugging information and does not generate the binaries. The command I've been running is: 
> 
> ./compile.py --target all --pythonVersion 2.7 --libDir /usr/lib64/openmpi/lib /usr/lib64 --includeDir /usr/include/openmpi-x86_64/ /usr/include/boost/ /usr/include/python2.7/ /usr/include /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ --dirPath /usr/bin /usr/lib --exeDir /usr/lib64/openmpi/bin /usr/bin /usr/lib
> 
> 
> The debugging information says that it's unable to find openmpic++ and mpicxx-openmpi-gcc45, but I have been unable to find these files on my system. I would really appreciate any help with this issue. I have also attached the full debugging information.
> 
> Thanks,
> 
> Cannon
> 
> <debug.txt>------------------------------------------------------------------------------
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