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[Pytom-mail] Compilation Problems
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From: Cannon L. <wc...@ri...> - 2015-06-25 17:31:28
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make -C ./libs/libtomc shared
make[1]: Entering directory '/home/cannon/Desktop/pytom/pytomc/libs/libtomc'
g++ -Wall -fPIC -Wno-long-long -pedantic -ansi --std=c++98 -gdwarf-2 -g3 -fpermissive -DFPU_SENDS_SIGFPE=1 -D_GLIBCXX_DEBUG -g -O1 -fthread-jumps -falign-functions -DTHREAD_SAFE=0 -DHOSTNAME=localhost.localdomain -c -o /home/cannon/Desktop/pytom/pytomc/libs/libtomc/libs/tom__transf__transform_cpp.o src/tom/transf/transform.cpp -I./include -I/usr/include -I/usr/include/
Makefile:54: recipe for target '/home/cannon/Desktop/pytom/pytomc/libs/libtomc/libs/tom__transf__transform_cpp.o' failed
make[1]: Leaving directory '/home/cannon/Desktop/pytom/pytomc/libs/libtomc'
Makefile:13: recipe for target 'libtomc' failed
make \
legendre \
sphere \
shared
make[1]: Entering directory '/home/cannon/Desktop/pytom/pytomc/sh_alignment/SpharmonicKit27'
make \
test_naive \
test_stability_naive \
test_semi \
test_flt_classic \
test_flt_dhmid \
test_flt_hybrid
make[2]: Entering directory '/home/cannon/Desktop/pytom/pytomc/sh_alignment/SpharmonicKit27'
make[2]: 'test_naive' is up to date.
make[2]: 'test_stability_naive' is up to date.
make[2]: 'test_semi' is up to date.
make[2]: 'test_flt_classic' is up to date.
make[2]: 'test_flt_dhmid' is up to date.
make[2]: 'test_flt_hybrid' is up to date.
make[2]: Leaving directory '/home/cannon/Desktop/pytom/pytomc/sh_alignment/SpharmonicKit27'
make \
FST_precomp2disk \
test_FST_semi_memo \
test_FST_semi_disk \
test_FST_semi_fly \
CONV_SEMI_DISK \
CONV_SEMI_MEMO \
CONV_SEMI_FLY \
test_FST_hybrid_disk \
test_FST_hybrid_memo \
test_FST_hybrid_memoX \
CONV_HYBRID_DISK \
CONV_HYBRID_MEMO
make[2]: Entering directory '/home/cannon/Desktop/pytom/pytomc/sh_alignment/SpharmonicKit27'
make[2]: 'FST_precomp2disk' is up to date.
make[2]: 'test_FST_semi_memo' is up to date.
make[2]: 'test_FST_semi_disk' is up to date.
make[2]: 'test_FST_semi_fly' is up to date.
make[2]: 'CONV_SEMI_DISK' is up to date.
make[2]: 'CONV_SEMI_MEMO' is up to date.
make[2]: 'CONV_SEMI_FLY' is up to date.
make[2]: 'test_FST_hybrid_disk' is up to date.
make[2]: 'test_FST_hybrid_memo' is up to date.
make[2]: 'test_FST_hybrid_memoX' is up to date.
make[2]: 'CONV_HYBRID_DISK' is up to date.
make[2]: 'CONV_HYBRID_MEMO' is up to date.
make[2]: Leaving directory '/home/cannon/Desktop/pytom/pytomc/sh_alignment/SpharmonicKit27'
cc -shared OURperms.o OURmods.o newFCT.o weights.o cospmls.o seminaive.o oddweights.o csecond.o primitive.o FST_semi_memo.o naive_synthesis.o primitive_FST.o permroots.o indextables.o FFTcode.o fft_grids.o -o libsphkit.so
make[1]: Leaving directory '/home/cannon/Desktop/pytom/pytomc/sh_alignment/SpharmonicKit27'
make: Nothing to be done for 'lib'.
running build
running build_src
running build_py
running build_clib
MPI configuration: [mpi] from 'mpi.cfg'
MPI C compiler: /usr/lib64/openmpi/bin/mpicc
checking for library 'vt-mpi' ...
/usr/lib64/openmpi/bin/mpicc -fPIC -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c _configtest.c -o _configtest.o
/usr/lib64/openmpi/bin/mpicc _configtest.o -lvt-mpi -o _configtest
success!
removing: _configtest.c _configtest.o _configtest
building 'vt' dylib library
/usr/lib64/openmpi/bin/mpicc -fPIC -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c src/pmpi-vt.c -o build/temp.linux-x86_64-2.7/src/pmpi-vt.o
/usr/lib64/openmpi/bin/mpicc -shared -L/build/local/lib build/temp.linux-x86_64-2.7/src/pmpi-vt.o -o build/lib.linux-x86_64-2.7/mpi4py/lib-pmpi/libvt.so -Wl,-whole-archive -lvt-mpi -Wl,-no-whole-archive -lotf -lz -ldl
running build_ext
MPI configuration: [mpi] from 'mpi.cfg'
MPI C compiler: /usr/lib64/openmpi/bin/mpicc
running build_exe
MPI configuration: [mpi] from 'mpi.cfg'
MPI C compiler: /usr/lib64/openmpi/bin/mpicc
running install
running build
running build_src
running build_py
running build_clib
MPI configuration: [mpi] from 'mpi.cfg'
checking for library 'vt-mpi' ...
gcc -fPIC -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c _configtest.c -o _configtest.o
gcc _configtest.o -lvt-mpi -o _configtest
failure.
removing: _configtest.c _configtest.o
checking for library 'vt.mpi' ...
gcc -fPIC -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c _configtest.c -o _configtest.o
gcc _configtest.o -lvt.mpi -o _configtest
failure.
removing: _configtest.c _configtest.o
building 'vt' dylib library
gcc -fPIC -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -c src/pmpi-vt.c -o build/temp.linux-x86_64-2.7/src/pmpi-vt.o
running build_ext
MPI configuration: [mpi] from 'mpi.cfg'
running build_exe
MPI configuration: [mpi] from 'mpi.cfg'
running install_lib
writing byte-compilation script '/tmp/tmpEie42O.py'
/home/cannon/EMAN2/extlib/bin/python -O /tmp/tmpEie42O.py
removing /tmp/tmpEie42O.py
running install_egg_info
Removing ../..//lib/python2.7/site-packages/mpi4py-1.3.1-py2.7.egg-info
Writing ../..//lib/python2.7/site-packages/mpi4py-1.3.1-py2.7.egg-info
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether make sets $(MAKE)... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking whether to enable maintainer-specific portions of Makefiles... no
checking for an ANSI C-conforming const... yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking if C compiler supports blocks... no
checking for C compiler vendor... gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether ln -s works... yes
checking for libdispatch... no
checking whether to check for Matlab... no
checking fftw3.h usability... yes
checking fftw3.h presence... yes
checking for fftw3.h... yes
checking for fftw_execute in -lfftw3... yes
checking whether C compiler accepts -malign-double... yes
checking whether C compiler accepts -fstrict-aliasing... yes
checking whether C compiler accepts -ffast-math... yes
checking for gcc architecture flag...
checking for x86 cpuid 0 output... unknown
checking for x86 cpuid 1 output... unknown
checking whether C compiler accepts -march=native... yes
checking for gcc architecture flag... -march=native
checking whether C compiler accepts -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native... yes
checking whether C compiler accepts ... yes
checking for ANSI C header files... (cached) yes
checking stdbool.h usability... yes
checking stdbool.h presence... yes
checking for stdbool.h... yes
checking libintl.h usability... yes
checking libintl.h presence... yes
checking for libintl.h... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
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checking c_asm.h usability... no
checking c_asm.h presence... no
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checking intrinsics.h usability... no
checking intrinsics.h presence... no
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checking mach/mach_time.h usability... no
checking mach/mach_time.h presence... no
checking for mach/mach_time.h... no
checking sys/sysctl.h usability... yes
checking sys/sysctl.h presence... yes
checking for sys/sysctl.h... yes
checking for c_asm.h... (cached) no
checking for intrinsics.h... (cached) no
checking sys/sysctl usability... no
checking sys/sysctl presence... no
checking for sys/sysctl... no
checking for size_t... yes
checking whether time.h and sys/time.h may both be included... yes
checking for long double... yes
checking for hrtime_t... no
checking size of int... 4
checking size of unsigned int... 4
checking size of long... 8
checking size of unsigned long... 8
checking size of long long... 8
checking size of unsigned long long... 8
checking size of size_t... 8
checking size of ptrdiff_t... 8
checking for uintptr_t... yes
checking size of float... 4
checking size of double... 8
checking size of long double... 16
checking for working alloca.h... yes
checking for alloca... yes
checking for working strtod... yes
checking for vprintf... yes
checking for _doprnt... no
checking for sin in -lm... yes
checking for BSDgettimeofday... no
checking for gettimeofday... yes
checking for gethrtime... no
checking for read_real_time... no
checking for time_base_to_time... no
checking for drand48... yes
checking for memset... yes
checking for posix_memalign... yes
checking for memalign... yes
checking for _mm_malloc... no
checking for _mm_free... no
checking for clock_gettime... yes
checking for mach_absolute_time... no
checking for sysctl... yes
checking for abort... yes
checking for snprintf... yes
checking for sqrt... yes
checking for tgamma... yes
checking for lgamma... yes
checking for log... yes
checking for sin... yes
checking for cos... yes
checking for acos... yes
checking for pow... yes
checking for exp... yes
checking for log2... yes
checking for log10... yes
checking for log1p... yes
checking for sqrt... (cached) yes
checking for tgamma... (cached) yes
checking for lgamma... (cached) yes
checking for log... (cached) yes
checking for sin... (cached) yes
checking for cos... (cached) yes
checking for acos... (cached) yes
checking for pow... (cached) yes
checking for exp... (cached) yes
checking for copysign... yes
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checking for log1pf... yes
checking for sqrtf... yes
checking for tgammaf... yes
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checking for logf... yes
checking for sinf... yes
checking for cosf... yes
checking for acosf... yes
checking for powf... yes
checking for expf... yes
checking for copysignf... yes
checking for lrintf... yes
checking for fmaxf... yes
checking for log2l... yes
checking for log10l... yes
checking for log1pl... yes
checking for sqrtl... yes
checking for tgammal... yes
checking for lgammal... yes
checking for logl... yes
checking for sinl... yes
checking for cosl... yes
checking for acosl... yes
checking for powl... yes
checking for expl... yes
checking for copysignl... yes
checking for lrintl... yes
checking for fmaxl... yes
checking for nanosleep... yes
checking for sleep... yes
checking for drand48... (cached) yes
checking for srand48... yes
checking whether memalign is declared... no
checking whether posix_memalign is declared... yes
checking whether log2 is declared... yes
checking whether log10 is declared... yes
checking whether log1p is declared... yes
checking whether sqrt is declared... yes
checking whether tgamma is declared... yes
checking whether lgamma is declared... yes
checking whether log is declared... yes
checking whether sin is declared... yes
checking whether cos is declared... yes
checking whether acos is declared... yes
checking whether pow is declared... yes
checking whether exp is declared... yes
checking whether copysign is declared... yes
checking whether lrint is declared... yes
checking whether fmax is declared... yes
checking whether log2f is declared... yes
checking whether log10f is declared... yes
checking whether log1pf is declared... yes
checking whether sqrtf is declared... yes
checking whether tgammaf is declared... yes
checking whether lgammaf is declared... yes
checking whether logf is declared... yes
checking whether sinf is declared... yes
checking whether cosf is declared... yes
checking whether acosf is declared... yes
checking whether powf is declared... yes
checking whether expf is declared... yes
checking whether copysignf is declared... yes
checking whether lrintf is declared... yes
checking whether fmaxf is declared... yes
checking whether log2l is declared... yes
checking whether log10l is declared... yes
checking whether log1pl is declared... yes
checking whether sqrtl is declared... yes
checking whether tgammal is declared... yes
checking whether lgammal is declared... yes
checking whether logl is declared... yes
checking whether sinl is declared... yes
checking whether cosl is declared... yes
checking whether acosl is declared... yes
checking whether powl is declared... yes
checking whether expl is declared... yes
checking whether copysignl is declared... yes
checking whether lrintl is declared... yes
checking whether fmaxl is declared... yes
checking whether nanosleep is declared... yes
checking whether drand48 is declared... yes
checking whether srand48 is declared... yes
checking whether sleep is declared... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating include/Makefile
config.status: creating include/nfft3conf.h
config.status: creating 3rdparty/Makefile
config.status: creating 3rdparty/cstripack/Makefile
config.status: creating util/Makefile
config.status: creating kernel/Makefile
config.status: creating kernel/fpt/Makefile
config.status: creating kernel/mri/Makefile
config.status: creating kernel/nfct/Makefile
config.status: creating kernel/nfft/Makefile
config.status: creating kernel/nfsft/Makefile
config.status: creating kernel/nfsoft/Makefile
config.status: creating kernel/nfst/Makefile
config.status: creating kernel/nnfft/Makefile
config.status: creating kernel/nsfft/Makefile
config.status: creating kernel/solver/Makefile
config.status: creating examples/Makefile
config.status: creating examples/fpt/Makefile
config.status: creating examples/mri/Makefile
config.status: creating examples/nfct/Makefile
config.status: creating examples/nfft/Makefile
config.status: creating examples/nfsft/Makefile
config.status: creating examples/nfsoft/Makefile
config.status: creating examples/nfst/Makefile
config.status: creating examples/nnfft/Makefile
config.status: creating examples/nsfft/Makefile
config.status: creating examples/solver/Makefile
config.status: creating applications/Makefile
config.status: creating applications/fastgauss/Makefile
config.status: creating applications/fastsum/Makefile
config.status: creating applications/fastsumS2/Makefile
config.status: creating applications/quadratureS2/Makefile
config.status: creating applications/mri/Makefile
config.status: creating applications/mri/mri2d/Makefile
config.status: creating applications/mri/mri3d/Makefile
config.status: creating applications/polarFFT/Makefile
config.status: creating applications/radon/Makefile
config.status: creating matlab/Makefile
config.status: creating matlab/nfsft/Makefile
config.status: creating matlab/nfft/Makefile
config.status: creating matlab/nfsft/@f_hat/Makefile
config.status: creating include/config.h
config.status: include/config.h is unchanged
config.status: executing libtool commands
config.status: executing depfiles commands
Making all in 3rdparty
make[1]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/3rdparty'
Making all in cstripack
make[2]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/3rdparty/cstripack'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/3rdparty/cstripack'
Making all in .
make[2]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/3rdparty'
make[2]: Nothing to be done for 'all-am'.
make[2]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/3rdparty'
make[1]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/3rdparty'
Making all in include
make[1]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/include'
make all-am
make[2]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/include'
make[2]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/include'
make[1]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/include'
Making all in util
make[1]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/util'
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I../3rdparty/cstripack -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT util.lo -MD -MP -MF .deps/util.Tpo -c -o util.lo util.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I../3rdparty/cstripack -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT util.lo -MD -MP -MF .deps/util.Tpo -c util.c -fPIC -DPIC -o .libs/util.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I../3rdparty/cstripack -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT util.lo -MD -MP -MF .deps/util.Tpo -c util.c -o util.o >/dev/null 2>&1
mv -f .deps/util.Tpo .deps/util.Plo
/bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I../3rdparty/cstripack -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT malloc.lo -MD -MP -MF .deps/malloc.Tpo -c -o malloc.lo malloc.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I../3rdparty/cstripack -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT malloc.lo -MD -MP -MF .deps/malloc.Tpo -c malloc.c -fPIC -DPIC -o .libs/malloc.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../include -I../include -I../3rdparty/cstripack -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT malloc.lo -MD -MP -MF .deps/malloc.Tpo -c malloc.c -o malloc.o >/dev/null 2>&1
mv -f .deps/malloc.Tpo .deps/malloc.Plo
/bin/sh ../libtool --tag=CC --mode=link gcc -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -o libutil.la util.lo malloc.lo -lm
libtool: link: rm -fr .libs/libutil.a .libs/libutil.la
libtool: link: ar cru .libs/libutil.a .libs/util.o .libs/malloc.o
libtool: link: ranlib .libs/libutil.a
libtool: link: ( cd ".libs" && rm -f "libutil.la" && ln -s "../libutil.la" "libutil.la" )
make[1]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/util'
Making all in kernel
make[1]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/kernel'
Making all in nfft
make[2]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/kernel/nfft'
/bin/sh ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../include -I../../include -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT nfft.lo -MD -MP -MF .deps/nfft.Tpo -c -o nfft.lo nfft.c
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../include -I../../include -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT nfft.lo -MD -MP -MF .deps/nfft.Tpo -c nfft.c -fPIC -DPIC -o .libs/nfft.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../include -I../../include -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT nfft.lo -MD -MP -MF .deps/nfft.Tpo -c nfft.c -o nfft.o >/dev/null 2>&1
mv -f .deps/nfft.Tpo .deps/nfft.Plo
/bin/sh ../../libtool --tag=CC --mode=link gcc -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -o libnfft.la nfft.lo -lm
libtool: link: rm -fr .libs/libnfft.a .libs/libnfft.la
libtool: link: ar cru .libs/libnfft.a .libs/nfft.o
libtool: link: ranlib .libs/libnfft.a
libtool: link: ( cd ".libs" && rm -f "libnfft.la" && ln -s "../libnfft.la" "libnfft.la" )
make[2]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/kernel/nfft'
Making all in solver
make[2]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/kernel/solver'
/bin/sh ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../include -I../../include -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT solver.lo -MD -MP -MF .deps/solver.Tpo -c -o solver.lo solver.c
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Making all in .
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gcc -DHAVE_CONFIG_H -I. -I../../include -I../../include -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT simple_test.o -MD -MP -MF .deps/simple_test.Tpo -c -o simple_test.o simple_test.c
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gcc -DHAVE_CONFIG_H -I. -I../../include -I../../include -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT ndft_fast.o -MD -MP -MF .deps/ndft_fast.Tpo -c -o ndft_fast.o ndft_fast.c
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gcc -DHAVE_CONFIG_H -I. -I../../include -I../../include -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT taylor_nfft.o -MD -MP -MF .deps/taylor_nfft.Tpo -c -o taylor_nfft.o taylor_nfft.c
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gcc -DHAVE_CONFIG_H -I. -I../../include -I../../include -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT flags.o -MD -MP -MF .deps/flags.Tpo -c -o flags.o flags.c
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gcc -DHAVE_CONFIG_H -I. -I../../include -I../../include -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT nfft_times.o -MD -MP -MF .deps/nfft_times.Tpo -c -o nfft_times.o nfft_times.c
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gcc -DHAVE_CONFIG_H -I. -I../../include -I../../include -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT simple_test.o -MD -MP -MF .deps/simple_test.Tpo -c -o simple_test.o simple_test.c
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gcc -DHAVE_CONFIG_H -I. -I../../include -I../../include -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT glacier.o -MD -MP -MF .deps/glacier.Tpo -c -o glacier.o glacier.c
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gcc -DHAVE_CONFIG_H -I. -I../../include -I../../include -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT fastgauss.o -MD -MP -MF .deps/fastgauss.Tpo -c -o fastgauss.o fastgauss.c
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libtool: link: gcc -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -o .libs/fastgauss fastgauss.o ../../.libs/libnfft3.so -lfftw3 -lm -Wl,-rpath -Wl,/home/cannon/Desktop/pytom/external/lib
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libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../include -I../../include -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT fastsum.lo -MD -MP -MF .deps/fastsum.Tpo -c fastsum.c -fPIC -DPIC -o .libs/fastsum.o
libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../include -I../../include -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT fastsum.lo -MD -MP -MF .deps/fastsum.Tpo -c fastsum.c -o fastsum.o >/dev/null 2>&1
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/bin/sh ../../libtool --tag=CC --mode=link gcc -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -o libfastsum.la fastsum.lo -lfftw3 -lm
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gcc -DHAVE_CONFIG_H -I. -I../../include -I../../include -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT fastsum_test.o -MD -MP -MF .deps/fastsum_test.Tpo -c -o fastsum_test.o fastsum_test.c
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gcc -DHAVE_CONFIG_H -I. -I../../include -I../../include -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT fastsum_matlab.o -MD -MP -MF .deps/fastsum_matlab.Tpo -c -o fastsum_matlab.o fastsum_matlab.c
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Making all in polarFFT
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gcc -DHAVE_CONFIG_H -I. -I../../include -I../../include -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT polar_fft_test.o -MD -MP -MF .deps/polar_fft_test.Tpo -c -o polar_fft_test.o polar_fft_test.c
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gcc -DHAVE_CONFIG_H -I. -I../../include -I../../include -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT mpolar_fft_test.o -MD -MP -MF .deps/mpolar_fft_test.Tpo -c -o mpolar_fft_test.o mpolar_fft_test.c
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gcc -DHAVE_CONFIG_H -I. -I../../include -I../../include -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT linogram_fft_test.o -MD -MP -MF .deps/linogram_fft_test.Tpo -c -o linogram_fft_test.o linogram_fft_test.c
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gcc -DHAVE_CONFIG_H -I. -I../../include -I../../include -O3 -fomit-frame-pointer -malign-double -fstrict-aliasing -ffast-math -march=native -MT inverse_radon.o -MD -MP -MF .deps/inverse_radon.Tpo -c -o inverse_radon.o inverse_radon.c
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make[3]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/3rdparty'
make[2]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/3rdparty'
make[1]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/3rdparty'
Making install in include
make[1]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/include'
make[2]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/include'
make[2]: Nothing to be done for 'install-exec-am'.
test -z "/home/cannon/Desktop/pytom/external/include" || /usr/bin/mkdir -p "/home/cannon/Desktop/pytom/external/include"
/usr/bin/install -c -m 644 'nfft3.h' '/home/cannon/Desktop/pytom/external/include/nfft3.h'
/usr/bin/install -c -m 644 'nfft3util.h' '/home/cannon/Desktop/pytom/external/include/nfft3util.h'
/usr/bin/install -c -m 644 'nfft3conf.h' '/home/cannon/Desktop/pytom/external/include/nfft3conf.h'
make[2]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/include'
make[1]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/include'
Making install in util
make[1]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/util'
make[2]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/util'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/util'
make[1]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/util'
Making install in kernel
make[1]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/kernel'
Making install in nfft
make[2]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/kernel/nfft'
make[3]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/kernel/nfft'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/kernel/nfft'
make[2]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/kernel/nfft'
Making install in solver
make[2]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/kernel/solver'
make[3]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/kernel/solver'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/kernel/solver'
make[2]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/kernel/solver'
Making install in .
make[2]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/kernel'
make[3]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/kernel'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/kernel'
make[2]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/kernel'
make[1]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/kernel'
Making install in .
make[1]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3'
make[2]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3'
test -z "/home/cannon/Desktop/pytom/external/lib" || /usr/bin/mkdir -p "/home/cannon/Desktop/pytom/external/lib"
/bin/sh ./libtool --mode=install /usr/bin/install -c 'libnfft3.la' '/home/cannon/Desktop/pytom/external/lib/libnfft3.la'
libtool: install: /usr/bin/install -c .libs/libnfft3.so.0.0.0 /home/cannon/Desktop/pytom/external/lib/libnfft3.so.0.0.0
libtool: install: (cd /home/cannon/Desktop/pytom/external/lib && { ln -s -f libnfft3.so.0.0.0 libnfft3.so.0 || { rm -f libnfft3.so.0 && ln -s libnfft3.so.0.0.0 libnfft3.so.0; }; })
libtool: install: (cd /home/cannon/Desktop/pytom/external/lib && { ln -s -f libnfft3.so.0.0.0 libnfft3.so || { rm -f libnfft3.so && ln -s libnfft3.so.0.0.0 libnfft3.so; }; })
libtool: install: /usr/bin/install -c .libs/libnfft3.lai /home/cannon/Desktop/pytom/external/lib/libnfft3.la
libtool: install: /usr/bin/install -c .libs/libnfft3.a /home/cannon/Desktop/pytom/external/lib/libnfft3.a
libtool: install: chmod 644 /home/cannon/Desktop/pytom/external/lib/libnfft3.a
libtool: install: ranlib /home/cannon/Desktop/pytom/external/lib/libnfft3.a
libtool: finish: PATH="/home/cannon/Desktop/pytom/bin:/home/cannon/EMAN2/bin:/home/cannon/EMAN2/extlib/bin:/home/cannon/EMAN2/bin:/home/cannon/EMAN2/extlib/bin:/usr/lib64/qt-3.3/bin:/usr/local/IMOD/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/home/cannon/EMAN2/bin:/home/cannon/EMAN2/examples:/home/cannon/.local/bin:/home/cannon/bin:/home/cannon/EMAN2/bin:/home/cannon/EMAN2/examples:/sbin" ldconfig -n /home/cannon/Desktop/pytom/external/lib
----------------------------------------------------------------------
Libraries have been installed in:
/home/cannon/Desktop/pytom/external/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the `LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the `LD_RUN_PATH' environment variable
during linking
- use the `-Wl,-rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to `/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
make install-data-hook
make[3]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3'
mkdir -p /home/cannon/Desktop/pytom/external/share/nfft
cp -R doc /home/cannon/Desktop/pytom/external/share/nfft
make[3]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3'
make[2]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3'
make[1]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3'
Making install in examples
make[1]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/examples'
Making install in nfft
make[2]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/examples/nfft'
make[3]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/examples/nfft'
make[3]: Nothing to be done for 'install-exec-am'.
test -z "/home/cannon/Desktop/pytom/external/share/nfft/examples/nfft" || /usr/bin/mkdir -p "/home/cannon/Desktop/pytom/external/share/nfft/examples/nfft"
/usr/bin/install -c -m 644 'flags.m' '/home/cannon/Desktop/pytom/external/share/nfft/examples/nfft/flags.m'
/usr/bin/install -c -m 644 'ndft_fast.m' '/home/cannon/Desktop/pytom/external/share/nfft/examples/nfft/ndft_fast.m'
/usr/bin/install -c -m 644 'taylor_nfft.m' '/home/cannon/Desktop/pytom/external/share/nfft/examples/nfft/taylor_nfft.m'
/usr/bin/install -c -m 644 'README' '/home/cannon/Desktop/pytom/external/share/nfft/examples/nfft/README'
test -z "/home/cannon/Desktop/pytom/external/share/nfft/examples/nfft" || /usr/bin/mkdir -p "/home/cannon/Desktop/pytom/external/share/nfft/examples/nfft"
/bin/sh ../../libtool --mode=install /usr/bin/install -c 'simple_test' '/home/cannon/Desktop/pytom/external/share/nfft/examples/nfft/simple_test'
libtool: install: /usr/bin/install -c .libs/simple_test /home/cannon/Desktop/pytom/external/share/nfft/examples/nfft/simple_test
/bin/sh ../../libtool --mode=install /usr/bin/install -c 'ndft_fast' '/home/cannon/Desktop/pytom/external/share/nfft/examples/nfft/ndft_fast'
libtool: install: /usr/bin/install -c .libs/ndft_fast /home/cannon/Desktop/pytom/external/share/nfft/examples/nfft/ndft_fast
/bin/sh ../../libtool --mode=install /usr/bin/install -c 'taylor_nfft' '/home/cannon/Desktop/pytom/external/share/nfft/examples/nfft/taylor_nfft'
libtool: install: /usr/bin/install -c .libs/taylor_nfft /home/cannon/Desktop/pytom/external/share/nfft/examples/nfft/taylor_nfft
/bin/sh ../../libtool --mode=install /usr/bin/install -c 'flags' '/home/cannon/Desktop/pytom/external/share/nfft/examples/nfft/flags'
libtool: install: /usr/bin/install -c .libs/flags /home/cannon/Desktop/pytom/external/share/nfft/examples/nfft/flags
/bin/sh ../../libtool --mode=install /usr/bin/install -c 'nfft_times' '/home/cannon/Desktop/pytom/external/share/nfft/examples/nfft/nfft_times'
libtool: install: /usr/bin/install -c .libs/nfft_times /home/cannon/Desktop/pytom/external/share/nfft/examples/nfft/nfft_times
make[3]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/examples/nfft'
make[2]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/examples/nfft'
Making install in solver
make[2]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/examples/solver'
make[3]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/examples/solver'
make[3]: Nothing to be done for 'install-exec-am'.
test -z "/home/cannon/Desktop/pytom/external/share/nfft/examples/solver" || /usr/bin/mkdir -p "/home/cannon/Desktop/pytom/external/share/nfft/examples/solver"
/usr/bin/install -c -m 644 'glacier.m' '/home/cannon/Desktop/pytom/external/share/nfft/examples/solver/glacier.m'
/usr/bin/install -c -m 644 'glacier_cv.m' '/home/cannon/Desktop/pytom/external/share/nfft/examples/solver/glacier_cv.m'
/usr/bin/install -c -m 644 'vol87.dat' '/home/cannon/Desktop/pytom/external/share/nfft/examples/solver/vol87.dat'
/usr/bin/install -c -m 644 'README' '/home/cannon/Desktop/pytom/external/share/nfft/examples/solver/README'
test -z "/home/cannon/Desktop/pytom/external/share/nfft/examples/solver" || /usr/bin/mkdir -p "/home/cannon/Desktop/pytom/external/share/nfft/examples/solver"
/bin/sh ../../libtool --mode=install /usr/bin/install -c 'simple_test' '/home/cannon/Desktop/pytom/external/share/nfft/examples/solver/simple_test'
libtool: install: /usr/bin/install -c .libs/simple_test /home/cannon/Desktop/pytom/external/share/nfft/examples/solver/simple_test
/bin/sh ../../libtool --mode=install /usr/bin/install -c 'glacier' '/home/cannon/Desktop/pytom/external/share/nfft/examples/solver/glacier'
libtool: install: /usr/bin/install -c .libs/glacier /home/cannon/Desktop/pytom/external/share/nfft/examples/solver/glacier
make[3]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/examples/solver'
make[2]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/examples/solver'
make[2]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/examples'
make[3]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/examples'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/examples'
make[2]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/examples'
make[1]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/examples'
Making install in applications
make[1]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/applications'
Making install in fastgauss
make[2]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/applications/fastgauss'
make[3]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/applications/fastgauss'
make[3]: Nothing to be done for 'install-exec-am'.
test -z "/home/cannon/Desktop/pytom/external/share/nfft/applications/fastgauss" || /usr/bin/mkdir -p "/home/cannon/Desktop/pytom/external/share/nfft/applications/fastgauss"
/usr/bin/install -c -m 644 'levelplots.m' '/home/cannon/Desktop/pytom/external/share/nfft/applications/fastgauss/levelplots.m'
/usr/bin/install -c -m 644 'show_results.m' '/home/cannon/Desktop/pytom/external/share/nfft/applications/fastgauss/show_results.m'
/usr/bin/install -c -m 644 'README' '/home/cannon/Desktop/pytom/external/share/nfft/applications/fastgauss/README'
test -z "/home/cannon/Desktop/pytom/external/share/nfft/applications/fastgauss" || /usr/bin/mkdir -p "/home/cannon/Desktop/pytom/external/share/nfft/applications/fastgauss"
/bin/sh ../../libtool --mode=install /usr/bin/install -c 'fastgauss' '/home/cannon/Desktop/pytom/external/share/nfft/applications/fastgauss/fastgauss'
libtool: install: /usr/bin/install -c .libs/fastgauss /home/cannon/Desktop/pytom/external/share/nfft/applications/fastgauss/fastgauss
make[3]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/applications/fastgauss'
make[2]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/applications/fastgauss'
Making install in fastsum
make[2]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/applications/fastsum'
make[3]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/applications/fastsum'
make[3]: Nothing to be done for 'install-exec-am'.
test -z "/home/cannon/Desktop/pytom/external/share/nfft/applications/fastsum" || /usr/bin/mkdir -p "/home/cannon/Desktop/pytom/external/share/nfft/applications/fastsum"
/usr/bin/install -c -m 644 'fastsum.m' '/home/cannon/Desktop/pytom/external/share/nfft/applications/fastsum/fastsum.m'
/usr/bin/install -c -m 644 'fastsum_test.m' '/home/cannon/Desktop/pytom/external/share/nfft/applications/fastsum/fastsum_test.m'
/usr/bin/install -c -m 644 'README' '/home/cannon/Desktop/pytom/external/share/nfft/applications/fastsum/README'
test -z "/home/cannon/Desktop/pytom/external/share/nfft/applications/fastsum" || /usr/bin/mkdir -p "/home/cannon/Desktop/pytom/external/share/nfft/applications/fastsum"
/bin/sh ../../libtool --mode=install /usr/bin/install -c 'fastsum_test' '/home/cannon/Desktop/pytom/external/share/nfft/applications/fastsum/fastsum_test'
libtool: install: /usr/bin/install -c .libs/fastsum_test /home/cannon/Desktop/pytom/external/share/nfft/applications/fastsum/fastsum_test
/bin/sh ../../libtool --mode=install /usr/bin/install -c 'fastsum_matlab' '/home/cannon/Desktop/pytom/external/share/nfft/applications/fastsum/fastsum_matlab'
libtool: install: /usr/bin/install -c .libs/fastsum_matlab /home/cannon/Desktop/pytom/external/share/nfft/applications/fastsum/fastsum_matlab
test -z "/home/cannon/Desktop/pytom/external/include/nfft" || /usr/bin/mkdir -p "/home/cannon/Desktop/pytom/external/include/nfft"
/usr/bin/install -c -m 644 'fastsum.h' '/home/cannon/Desktop/pytom/external/include/nfft/fastsum.h'
/usr/bin/install -c -m 644 'kernels.h' '/home/cannon/Desktop/pytom/external/include/nfft/kernels.h'
make[3]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/applications/fastsum'
make[2]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/applications/fastsum'
Making install in polarFFT
make[2]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/applications/polarFFT'
make[3]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/applications/polarFFT'
make[3]: Nothing to be done for 'install-exec-am'.
test -z "/home/cannon/Desktop/pytom/external/share/nfft/applications/polarFFT" || /usr/bin/mkdir -p "/home/cannon/Desktop/pytom/external/share/nfft/applications/polarFFT"
/usr/bin/install -c -m 644 'phantom.m' '/home/cannon/Desktop/pytom/external/share/nfft/applications/polarFFT/phantom.m'
/usr/bin/install -c -m 644 'fft_test.m' '/home/cannon/Desktop/pytom/external/share/nfft/applications/polarFFT/fft_test.m'
/usr/bin/install -c -m 644 'README' '/home/cannon/Desktop/pytom/external/share/nfft/applications/polarFFT/README'
test -z "/home/cannon/Desktop/pytom/external/share/nfft/applications/polarFFT" || /usr/bin/mkdir -p "/home/cannon/Desktop/pytom/external/share/nfft/applications/polarFFT"
/bin/sh ../../libtool --mode=install /usr/bin/install -c 'polar_fft_test' '/home/cannon/Desktop/pytom/external/share/nfft/applications/polarFFT/polar_fft_test'
libtool: install: /usr/bin/install -c .libs/polar_fft_test /home/cannon/Desktop/pytom/external/share/nfft/applications/polarFFT/polar_fft_test
/bin/sh ../../libtool --mode=install /usr/bin/install -c 'mpolar_fft_test' '/home/cannon/Desktop/pytom/external/share/nfft/applications/polarFFT/mpolar_fft_test'
libtool: install: /usr/bin/install -c .libs/mpolar_fft_test /home/cannon/Desktop/pytom/external/share/nfft/applications/polarFFT/mpolar_fft_test
/bin/sh ../../libtool --mode=install /usr/bin/install -c 'linogram_fft_test' '/home/cannon/Desktop/pytom/external/share/nfft/applications/polarFFT/linogram_fft_test'
libtool: install: /usr/bin/install -c .libs/linogram_fft_test /home/cannon/Desktop/pytom/external/share/nfft/applications/polarFFT/linogram_fft_test
make[3]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/applications/polarFFT'
make[2]: Leaving directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/applications/polarFFT'
Making install in radon
make[2]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/applications/radon'
make[3]: Entering directory '/home/cannon/Desktop/pytom/external/src/nfft-3.1.3/applications/radon'
make[3]: Nothing to be done for 'install-exec-am'.
test -z "/home/cannon/Desktop/pytom/external/share/nfft/applications/radon" || /usr/bin/mkdir -p "/home/cannon/Desktop/pytom/external/share/nfft/applications/radon"
/usr/bin/install -c -m 644 'phantom.m' '/home/cannon/Desktop/pytom/external/share/nfft/applications/radon/phantom.m'
/usr/bin/install -c -m 644 'radon.m' '/home/cannon/Desktop/pytom/external/share/nfft/applications/radon/radon.m'
/usr/bin/install -c -m 644 'ridgelet.m' '/home/cannon/Desktop/pytom/external/share/nfft/applications/radon/ridgelet.m'
/usr/bin/install -c -m 644 'README' '/home/cannon/Desktop/pytom/external/share/nfft/applications/radon/README'
test -z "/home/cannon/Desktop/pytom/external/share/nfft/applications/radon" || /usr/bin/mkdir -p "/home/cannon/Desktop/pytom/external/share/nfft/applications/radon"
/bin/sh ../../libtool --mode=install /usr/bin/install -c 'radon' '/home/cannon/Desktop/pytom/external/share/nfft/applications/radon/radon'
libtool: install: /usr/bin/install -c .libs/radon /home/cannon/Desktop/pytom/external/share/nfft/applications/radon/radon
/bin/sh ../../libtool --mode=install /usr/bin/install -c 'inverse_radon' '/home/cannon/Desktop/pytom/extern...
[truncated message content] |
