Re: [Pytom-mail] ImportError during reconstruct subvolume INFR

[Yuntao L. <pro...@gm...>]

Dear Yuxiang:

Thank you. That file works.

Best
Yuntao

2015-06-24 2:32 GMT+08:00 Yuxiang Chen <che...@ho...>:

> Hi Yuntao,
>
> that's weird. You can get this file at: https://bitbucket.org/kkhust/tompy
>
> Cheers,
> Yuxiang
>
> ------------------------------
> Date: Tue, 23 Jun 2015 22:07:57 +0800
> From: pro...@gm...
> To: che...@ho...
> CC: pyt...@li...
> Subject: Re: [Pytom-mail] ImportError during reconstruct subvolume INFR
>
>
> Dear Yuxiang:
>
>
> This problem is found in both Pytom_0.963 and beta. The tompy can be
> imported normally but only tompy.transform is missing. So maybe just
> adding the file to tompy folder will fix that problem.
>
>
>
>
> 2015-06-23 16:08 GMT+08:00 Yuxiang Chen <che...@ho...>:
>
> Dear Yuntao,
>
> tompy.transform module is missing. Are you using the latest version
> 0.963beta? Will it pop up any error message when you try:
> import tompy
>
> For the memory consumption, it is indeed very demanding for reconstructing
> big volumes. The current INFR implementation is not optimized for that.
> However, there is a work around: because INFR assumes the projections are
> aligned and the Y-axis is the rotating axis, you can cut your projections
> along the Y-axis and conduct the reconstructions separately. In the end,
> you can simply assemble all the reconstructions into the final volume by
> pasting them along Y-axis.
>
> Cheers,
> Yuxiang
>
> ------------------------------
> Date: Tue, 23 Jun 2015 10:57:15 +0800
> From: pro...@gm...
> To: pyt...@li...
> Subject: [Pytom-mail] ImportError during reconstruct subvolume INFR
>
>
>
> Hi everyone:
>
> I received an error message during my running
> reconstruct_subvolumes_INFR.py
>
> Traceback (most recent call last):
>   File
> "/home/lytao/software/pytom/reconstruction/reconstruct_subvolumes_INFR.py",
> line 73, in <module>
>     from tompy.transform import cut_from_projection
> ImportError: No module named transform
>
> And I did not find tompy.transform module in pytom v_0.963
>
> By the way, it requires a lot of memory to reconstruct full tomogram by
> INFR. Do you have any suggestion to reduce the memory consumption?
>
> --
> Yuntao liu
>
>
> Lab of Neurophysics and Neurophysiology
> Center of integrative imaging
> University of Science and Technology of CHINA
>
>
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>
> --
> Yuntao liu
>
>
> Lab of Neurophysics and Neurophysiology
> Center of integrative imaging
> University of Science and Technology of CHINA
>
>
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> devices for free with no restriction. Download now
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-- 
Yuntao liu


Lab of Neurophysics and Neurophysiology
Center of integrative imaging
University of Science and Technology of CHINA