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Re: [Pytom-mail] ImportError during reconstruct subvolume INFR
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From: Yuxiang C. <che...@ho...> - 2015-06-23 18:32:16
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Hi Yuntao, that's weird. You can get this file at: https://bitbucket.org/kkhust/tompy Cheers,Yuxiang Date: Tue, 23 Jun 2015 22:07:57 +0800 From: pro...@gm... To: che...@ho... CC: pyt...@li... Subject: Re: [Pytom-mail] ImportError during reconstruct subvolume INFR Dear Yuxiang: This problem is found in both Pytom_0.963 and beta. The tompy can be imported normally but only tompy.transform is missing. So maybe just adding the file to tompy folder will fix that problem. 2015-06-23 16:08 GMT+08:00 Yuxiang Chen <che...@ho...>: Dear Yuntao, tompy.transform module is missing. Are you using the latest version 0.963beta? Will it pop up any error message when you try: import tompy For the memory consumption, it is indeed very demanding for reconstructing big volumes. The current INFR implementation is not optimized for that. However, there is a work around: because INFR assumes the projections are aligned and the Y-axis is the rotating axis, you can cut your projections along the Y-axis and conduct the reconstructions separately. In the end, you can simply assemble all the reconstructions into the final volume by pasting them along Y-axis. Cheers, Yuxiang Date: Tue, 23 Jun 2015 10:57:15 +0800 From: pro...@gm... To: pyt...@li... Subject: [Pytom-mail] ImportError during reconstruct subvolume INFR Hi everyone: I received an error message during my running reconstruct_subvolumes_INFR.py Traceback (most recent call last): File "/home/lytao/software/pytom/reconstruction/reconstruct_subvolumes_INFR.py", line 73, in <module> from tompy.transform import cut_from_projection ImportError: No module named transform And I did not find tompy.transform module in pytom v_0.963 By the way, it requires a lot of memory to reconstruct full tomogram by INFR. Do you have any suggestion to reduce the memory consumption? -- Yuntao liu Lab of Neurophysics and Neurophysiology Center of integrative imaging University of Science and Technology of CHINA ------------------------------------------------------------------------------ Monitor 25 network devices or servers for free with OpManager! OpManager is web-based network management software that monitors network devices and physical & virtual servers, alerts via email & sms for fault. Monitor 25 devices for free with no restriction. Download now http://ad.doubleclick.net/ddm/clk/292181274;119417398;o _______________________________________________ Pytom-mail mailing list Pyt...@li... https://lists.sourceforge.net/lists/listinfo/pytom-mail -- Yuntao liu Lab of Neurophysics and Neurophysiology Center of integrative imaging University of Science and Technology of CHINA ------------------------------------------------------------------------------ Monitor 25 network devices or servers for free with OpManager! OpManager is web-based network management software that monitors network devices and physical & virtual servers, alerts via email & sms for fault. Monitor 25 devices for free with no restriction. Download now http://ad.doubleclick.net/ddm/clk/292181274;119417398;o _______________________________________________ Pytom-mail mailing list Pyt...@li... https://lists.sourceforge.net/lists/listinfo/pytom-mail |
