Pyntrez NCBI Database Client Code
Command-line, Entrez, NCBI e-utilities client, written in Python
Brought to you by:
osjo2019
File | Date | Author | Commit |
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sample | 2014-12-01 |
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[926e8f] Initial commit |
README.txt | 2014-12-01 |
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[926e8f] Initial commit |
__init__.py | 2014-12-01 |
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[926e8f] Initial commit |
esrchsmry.py | 2014-12-01 |
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[926e8f] Initial commit |
eutil.py | 2014-12-01 |
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[926e8f] Initial commit |
querypipe.py | 2014-12-01 |
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[926e8f] Initial commit |
xml2tab.py | 2014-12-01 |
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[926e8f] Initial commit |
o esrchsmry.py Parse out relevant information from the XML formatted data returned by e-utility Esearch: QueryTranslation, Count, RetMax, RetStart, QueryKey, WebEnv, IdList. o eutil.py Client for NCBI eutilities. No restrictions. o querypipe.py Client that allows multiple queries to be posted with one execution. Created for e-utility Esearch (Don't know what happens if another utility is chosen; hence with restrictions). A comma-delimited list of queries (ie. search words, for instance drug names, is supplied and a data summary and id-list returned for convenient use with eutil.py. The module depends on "eutil.py", and that the latter is located in the same directory as this one. o xml2tab.py Convert XML formatted file to tabular file. Quick and dirty.