Pyntrez NCBI Database Client Code
Command-line, Entrez, NCBI e-utilities client, written in Python
Brought to you by:
osjo2019
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Tree [926e8f] master / History
| File | Date | Author | Commit |
|---|---|---|---|
| sample | 2014-12-01 |
osjo2019
|
[926e8f] Initial commit |
| README.txt | 2014-12-01 |
osjo2019
|
[926e8f] Initial commit |
| __init__.py | 2014-12-01 |
osjo2019
|
[926e8f] Initial commit |
| esrchsmry.py | 2014-12-01 |
osjo2019
|
[926e8f] Initial commit |
| eutil.py | 2014-12-01 |
osjo2019
|
[926e8f] Initial commit |
| querypipe.py | 2014-12-01 |
osjo2019
|
[926e8f] Initial commit |
| xml2tab.py | 2014-12-01 |
osjo2019
|
[926e8f] Initial commit |
Read Me
o esrchsmry.py
Parse out relevant information from the XML formatted data
returned by e-utility Esearch: QueryTranslation, Count,
RetMax, RetStart, QueryKey, WebEnv, IdList.
o eutil.py
Client for NCBI eutilities. No restrictions.
o querypipe.py
Client that allows multiple queries to be posted with one
execution. Created for e-utility Esearch (Don't know what
happens if another utility is chosen; hence with
restrictions). A comma-delimited list of queries (ie.
search words, for instance drug names, is supplied and a
data summary and id-list returned for convenient use with
eutil.py. The module depends on "eutil.py", and that the
latter is located in the same directory as this one.
o xml2tab.py
Convert XML formatted file to tabular file. Quick and dirty.
