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[Pytables-users] Re: pytables under Linux_x86_64
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From: <ho...@gl...> - 2005-04-20 14:05:39
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Francesc Altet <fa...@ca...> writes: > Hello Berthold, > > PyTables 0.9.1 does not work with HDF5 1.6.4. You can workaround on > this in a couple of ways: > > 1.- Use HDF5 1.6.3 with PyTables 0.9.1. > > 2.- Use HDF5 1.6.4 with the current development version of PyTables > (1.0-alpha, well, almost beta :). You can fetch this development > version of PyTables from our tarballs of snapshots repository: > > http://www.carabos.com/downloads/pytables/snapshots/ > > In any case, would you mind reporting whether the tests passes or not > on your Opteron machine? Now, I downloaded and installed pytables 20050420. Here are my results on a 4 AMD Opteron(tm) Processor 850 machine with 8 GB: hoel@amur:test /usr/local/gltools/python/Python-2.4/linux_x86_64/bin/python= test_all.py=20=20 -=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-= =3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D= -=3D PyTables version: 1.0 (alpha) Extension version: $Id: hdf5Extension.pyx 769 2005-04-14 15:39:46Z ivilata = $=20 HDF5 version: 1.6.4 numarray version: 1.3.0 Zlib version: 1.2.1 BZIP2 version: 1.0.2 (30-Dec-2001) Python version: 2.4.1 (#1, Apr 14 2005, 14:25:40)=20 [GCC 3.3.3 (SuSE Linux)] Platform: linux2-x86_64 Byte-ordering: little -=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-= =3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D= -=3D Performing only a light (yet comprehensive) subset of the test suite. If you have a big system and lots of CPU to waste and want to do a more complete test, try passing the --heavy flag to this script. The whole suite will take more than 10 minutes to complete on a relatively modern CPU and around 100 MB of main memory. -=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-= =3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D= -=3D Numeric (version 23.8) is present. Adding the Numeric test suite. -=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-= =3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D= -=3D /usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/site-packag= es/tables/Leaf.py:97: UserWarning: ucl compression library is not available= . Using zlib instead!. warnings.warn( \ /usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/site-packag= es/tables/Leaf.py:97: UserWarning: lzo compression library is not available= . Using zlib instead!. warnings.warn( \ ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ......................FF...................................................= ...........................................................................= ...........................................................................= ...........................................................................= ..............................F............................................= ...........................................................................= .........................EE..EE..EE..EE..EEE. =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (test_Numeric.Basic1DOneTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 106, i= n test02_types self.WriteRead(a) File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 42, in= WriteRead b =3D self.root.somearray.read() File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 612, in read return self._convToFlavor(arr) File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 547, in _convToFlavor typecode=3Darr.typecode()) ValueError: Invalid type for array =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (test_Numeric.Basic1DOneTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 123, i= n test03_types_nc self.WriteRead(b) File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 42, in= WriteRead b =3D self.root.somearray.read() File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 612, in read return self._convToFlavor(arr) File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 547, in _convToFlavor typecode=3Darr.typecode()) ValueError: Invalid type for array =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (test_Numeric.Basic1DTwoTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 106, i= n test02_types self.WriteRead(a) File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 42, in= WriteRead b =3D self.root.somearray.read() File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 612, in read return self._convToFlavor(arr) File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 547, in _convToFlavor typecode=3Darr.typecode()) ValueError: Invalid type for array =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (test_Numeric.Basic1DTwoTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 123, i= n test03_types_nc self.WriteRead(b) File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 42, in= WriteRead b =3D self.root.somearray.read() File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 612, in read return self._convToFlavor(arr) File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 547, in _convToFlavor typecode=3Darr.typecode()) ValueError: Invalid type for array =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (test_Numeric.Basic1DThreeTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 106, i= n test02_types self.WriteRead(a) File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 42, in= WriteRead b =3D self.root.somearray.read() File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 612, in read return self._convToFlavor(arr) File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 547, in _convToFlavor typecode=3Darr.typecode()) ValueError: Invalid type for array =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (test_Numeric.Basic1DThreeTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 123, i= n test03_types_nc self.WriteRead(b) File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 42, in= WriteRead b =3D self.root.somearray.read() File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 612, in read return self._convToFlavor(arr) File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 547, in _convToFlavor typecode=3Darr.typecode()) ValueError: Invalid type for array =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (test_Numeric.Basic2DTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 106, i= n test02_types self.WriteRead(a) File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 42, in= WriteRead b =3D self.root.somearray.read() File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 612, in read return self._convToFlavor(arr) File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 547, in _convToFlavor typecode=3Darr.typecode()) ValueError: Invalid type for array =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (test_Numeric.Basic2DTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 123, i= n test03_types_nc self.WriteRead(b) File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 42, in= WriteRead b =3D self.root.somearray.read() File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 612, in read return self._convToFlavor(arr) File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 547, in _convToFlavor typecode=3Darr.typecode()) ValueError: Invalid type for array =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (test_Numeric.Basic10DTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 106, i= n test02_types self.WriteRead(a) File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 42, in= WriteRead b =3D self.root.somearray.read() File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 612, in read return self._convToFlavor(arr) File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 547, in _convToFlavor typecode=3Darr.typecode()) ValueError: Invalid type for array =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (test_Numeric.Basic10DTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 123, i= n test03_types_nc self.WriteRead(b) File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 42, in= WriteRead b =3D self.root.somearray.read() File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 612, in read return self._convToFlavor(arr) File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 547, in _convToFlavor typecode=3Darr.typecode()) ValueError: Invalid type for array =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (test_Numeric.GroupsArrayTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 304, i= n test00_iterativeGroups b =3D dset.read() File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 612, in read return self._convToFlavor(arr) File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 547, in _convToFlavor typecode=3Darr.typecode()) ValueError: Invalid type for array =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D FAIL: None (test_vlarray.SetRangeTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_vlarray.py", line 2383, = in test04_start_stop assert allequal(row[1], concatenate([arange(9, type=3DInt32)*2+3,9])) AssertionError =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D FAIL: None (test_vlarray.SetRangeTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_vlarray.py", line 2416, = in test05_start_stop assert allequal(row[1], concatenate([arange(9, type=3DInt32)*2+3,9])) AssertionError =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D FAIL: Comparing written 32-bit time data with read data in a VLArray. ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_timetype.py", line 259, = in test00_Compare32VLArray "Stored and retrieved values do not match.") AssertionError: Stored and retrieved values do not match. ---------------------------------------------------------------------- Ran 1845 tests in 84.024s FAILED (failures=3D3, errors=3D11) hoel@amur:test /usr/local/gltools/python/Python-2.4/linux_x86_64/bin/python= test_all.py --heavy -=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-= =3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D= -=3D PyTables version: 1.0 (alpha) Extension version: $Id: hdf5Extension.pyx 769 2005-04-14 15:39:46Z ivilata = $=20 HDF5 version: 1.6.4 numarray version: 1.3.0 Zlib version: 1.2.1 BZIP2 version: 1.0.2 (30-Dec-2001) Python version: 2.4.1 (#1, Apr 14 2005, 14:25:40)=20 [GCC 3.3.3 (SuSE Linux)] Platform: linux2-x86_64 Byte-ordering: little -=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-= =3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D= -=3D Performing the complete test suite! -=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-= =3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D= -=3D Numeric (version 23.8) is present. Adding the Numeric test suite. -=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-= =3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D= -=3D /usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/site-packag= es/tables/Leaf.py:97: UserWarning: ucl compression library is not available= . Using zlib instead!. warnings.warn( \ /usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/site-packag= es/tables/Leaf.py:97: UserWarning: lzo compression library is not available= . Using zlib instead!. warnings.warn( \ ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= .......................Warning: Encountered invalid numeric result(s) in l= ess Warning: Encountered invalid numeric result(s) in greater Warning: Encountered invalid numeric result(s) in less_equal Warning: Encountered invalid numeric result(s) in greater_equal Warning: Encountered invalid numeric result(s) in less_equal Warning: Encountered invalid numeric result(s) in greater_equal ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ............................................Warning: Encountered invalid nu= meric result(s) in greater_equal Warning: Encountered invalid numeric result(s) in less_equal Warning: Encountered invalid numeric result(s) in greater_equal Warning: Encountered invalid numeric result(s) in less Warning: Encountered invalid numeric result(s) in greater Warning: Encountered invalid numeric result(s) in less_equal Warning: Encountered invalid numeric result(s) in greater Warning: Encountered invalid numeric result(s) in less ...Warning: Encountered invalid numeric result(s) in less Warning: Encountered invalid numeric result(s) in greater Warning: Encountered invalid numeric result(s) in less_equal Warning: Encountered invalid numeric result(s) in greater_equal Warning: Encountered invalid numeric result(s) in less_equal Warning: Encountered invalid numeric result(s) in greater_equal ...........................................................................= .......................................................................FF..= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ....F......................................................................= ..........................................................................E= E..EE..EE..EE..EEE. =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (test_Numeric.Basic1DOneTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 106, i= n test02_types self.WriteRead(a) File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 42, in= WriteRead b =3D self.root.somearray.read() File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 612, in read return self._convToFlavor(arr) File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 547, in _convToFlavor typecode=3Darr.typecode()) ValueError: Invalid type for array =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (test_Numeric.Basic1DOneTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 123, i= n test03_types_nc self.WriteRead(b) File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 42, in= WriteRead b =3D self.root.somearray.read() File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 612, in read return self._convToFlavor(arr) File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 547, in _convToFlavor typecode=3Darr.typecode()) ValueError: Invalid type for array =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (test_Numeric.Basic1DTwoTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 106, i= n test02_types self.WriteRead(a) File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 42, in= WriteRead b =3D self.root.somearray.read() File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 612, in read return self._convToFlavor(arr) File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 547, in _convToFlavor typecode=3Darr.typecode()) ValueError: Invalid type for array =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (test_Numeric.Basic1DTwoTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 123, i= n test03_types_nc self.WriteRead(b) File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 42, in= WriteRead b =3D self.root.somearray.read() File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 612, in read return self._convToFlavor(arr) File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 547, in _convToFlavor typecode=3Darr.typecode()) ValueError: Invalid type for array =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (test_Numeric.Basic1DThreeTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 106, i= n test02_types self.WriteRead(a) File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 42, in= WriteRead b =3D self.root.somearray.read() File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 612, in read return self._convToFlavor(arr) File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 547, in _convToFlavor typecode=3Darr.typecode()) ValueError: Invalid type for array =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (test_Numeric.Basic1DThreeTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 123, i= n test03_types_nc self.WriteRead(b) File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 42, in= WriteRead b =3D self.root.somearray.read() File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 612, in read return self._convToFlavor(arr) File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 547, in _convToFlavor typecode=3Darr.typecode()) ValueError: Invalid type for array =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (test_Numeric.Basic2DTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 106, i= n test02_types self.WriteRead(a) File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 42, in= WriteRead b =3D self.root.somearray.read() File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 612, in read return self._convToFlavor(arr) File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 547, in _convToFlavor typecode=3Darr.typecode()) ValueError: Invalid type for array =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (test_Numeric.Basic2DTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 123, i= n test03_types_nc self.WriteRead(b) File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 42, in= WriteRead b =3D self.root.somearray.read() File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 612, in read return self._convToFlavor(arr) File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 547, in _convToFlavor typecode=3Darr.typecode()) ValueError: Invalid type for array =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (test_Numeric.Basic10DTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 106, i= n test02_types self.WriteRead(a) File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 42, in= WriteRead b =3D self.root.somearray.read() File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 612, in read return self._convToFlavor(arr) File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 547, in _convToFlavor typecode=3Darr.typecode()) ValueError: Invalid type for array =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (test_Numeric.Basic10DTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 123, i= n test03_types_nc self.WriteRead(b) File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 42, in= WriteRead b =3D self.root.somearray.read() File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 612, in read return self._convToFlavor(arr) File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 547, in _convToFlavor typecode=3Darr.typecode()) ValueError: Invalid type for array =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (test_Numeric.GroupsArrayTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_Numeric.py", line 304, i= n test00_iterativeGroups b =3D dset.read() File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 612, in read return self._convToFlavor(arr) File "/usr/local/gltools/python/Python-2.4/linux_x86_64/lib/python2.4/sit= e-packages/tables/Array.py", line 547, in _convToFlavor typecode=3Darr.typecode()) ValueError: Invalid type for array =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D FAIL: None (test_vlarray.SetRangeTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_vlarray.py", line 2383, = in test04_start_stop assert allequal(row[1], concatenate([arange(9, type=3DInt32)*2+3,9])) AssertionError =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D FAIL: None (test_vlarray.SetRangeTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_vlarray.py", line 2416, = in test05_start_stop assert allequal(row[1], concatenate([arange(9, type=3DInt32)*2+3,9])) AssertionError =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D FAIL: Comparing written 32-bit time data with read data in a VLArray. ---------------------------------------------------------------------- Traceback (most recent call last): File "/data/tmp/hoel/pytables-20050420/test/test_timetype.py", line 259, = in test00_Compare32VLArray "Stored and retrieved values do not match.") AssertionError: Stored and retrieved values do not match. ---------------------------------------------------------------------- Ran 2414 tests in 255.982s FAILED (failures=3D3, errors=3D11) Kind regards Berthold H=F6llmann --=20 Germanischer Lloyd AG CAE Development Vorsetzen 35 20459 Hamburg Phone: +49(0)40 36149-7374 Fax: +49(0)40 36149-7320 e-mail: ho...@gl... Internet: http://www.gl-group.com |
