Re: [Pytables-users] pytables under Linux_x86_64

[Francesc A. <fa...@ca...>]

Hello Berthold,

PyTables 0.9.1 does not work with HDF5 1.6.4. You can workaround on
this in a couple of ways:

1.- Use HDF5 1.6.3 with PyTables 0.9.1.

2.- Use HDF5 1.6.4 with the current development version of PyTables
(1.0-alpha, well, almost beta :). You can fetch this development
version of PyTables from our tarballs of snapshots repository:

http://www.carabos.com/downloads/pytables/snapshots/

In any case, would you mind reporting whether the tests passes or not
on your Opteron machine?

Cheers,

A Dimecres 20 Abril 2005 14:09, Berthold H=F6llmann va escriure:
> I try to get pytables installed on a Quad Opteron server under SuSE
> SLES 9. I compiled and installed HDF5 1.6.4, numarray 1.3.0, and
> Numeric 23.8. Current pytables is from CVS (but I had similar problems
> with 0.9.1. Installing pytables, changing to the test subdirectory and
> running "python test_all.py" gives
>
> ----------------------------------------------------------------------
> Ran 1651 tests in 73.074s
>
> FAILED (failures=3D55, errors=3D10)
>
> as a result. I get lots of
>
>
> HDF5-DIAG: Error detected in HDF5 library version: 1.6.4 thread 0.  Back
> trace follows. #000: H5Tnative.c line 118 in H5Tget_native_type(): cannot
> retrieve native type major(01): Function arguments
>     minor(03): Inappropriate type
>   #001: H5Tnative.c line 218 in H5T_get_native_type(): bit field type is
> not supported yet major(01): Function arguments
>     minor(03): Inappropriate type
> Problems deleting records.
> FHDF5-DIAG: Error detected in HDF5 library version: 1.6.4 thread 0.  Back
> trace follows. #000: H5Tnative.c line 118 in H5Tget_native_type(): cannot
> retrieve native type major(01): Function arguments
>     minor(03): Inappropriate type
>   #001: H5Tnative.c line 218 in H5T_get_native_type(): bit field type is
> not supported yet major(01): Function arguments
>     minor(03): Inappropriate type
> Problems deleting records.
>
> messages. The last 2 error reports are
>
> =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
> FAIL: None (test_Numeric.Basic1DThreeTestCase)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/data/tmp/hoel/pytables_CVS_20050420/test/test_Numeric.py", line
> 124, in test03_types_nc self.WriteRead(b)
>   File "/data/tmp/hoel/pytables_CVS_20050420/test/test_Numeric.py", line
> 76, in WriteRead assert allequal(a,b, "Numeric")
> AssertionError
>
> =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
> FAIL: None (test_Numeric.Basic2DTestCase)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/data/tmp/hoel/pytables_CVS_20050420/test/test_Numeric.py", line
> 124, in test03_types_nc self.WriteRead(b)
>   File "/data/tmp/hoel/pytables_CVS_20050420/test/test_Numeric.py", line
> 76, in WriteRead assert allequal(a,b, "Numeric")
> AssertionError
>
> Is there a known problem, or do I have problems with my software
> installation?
>
> Kind regards
>
> Berthold H=F6llmann

=2D-=20
>0,0<   Francesc Altet =A0 =A0 http://www.carabos.com/
V   V   C=E1rabos Coop. V. =A0=A0Enjoy Data
 "-"