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Re: [Pytables-users] Problem using HDFStore in pandas on Windows 64-bit Anaconda CE
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From: Jon R. <row...@gm...> - 2013-02-15 17:13:04
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Thanks for confirming - I'll keep an eye out for the fix. On Fri, Feb 15, 2013 at 4:12 PM, Francesc Alted <fa...@gm...> wrote: > Hi Jon and Anthony, > > I can confirm that this is a package error of PyTables in Anaconda CE 64 > for Windows. We have filed a ticket in Anaconda for fixing this. Sorry > for the inconveniences. > > Francesc Alted > > On 2/15/13 4:56 PM, Anthony Scopatz wrote: >> Hi Jon, >> >> Unfortunately, I have no way of testing this out. I will say that I >> have had problems with HDF5 and Anaconda on windows before since they >> only ship the static *.lib hdf5 libraries. So it may be the case that >> the pandas -> pytables / hdf5 interface hasn't been properly linked. >> Barring someone on this list who can test things out for you, you >> might try grabbing the PyTables source from github and building it on >> top of your install of Anaconda. Sorry... >> >> Be Well >> Anthony >> >> >> On Fri, Feb 15, 2013 at 3:29 AM, Jon Rowland <row...@gm... >> <mailto:row...@gm...>> wrote: >> >> Hi - apologies if this is a duplicate, I had an error sending the >> first time and wasn't sure if it made it through. >> >> I have an issue using pandas/HDFStore/pytables in the Anaconda CE >> distribution on Windows 64-bit. >> >> After a little troubleshooting with the Anaconda/pandas lists, it's >> been suggested that it might be a pytables issue (or at least some >> kind of package mismatch causing pytables not to work). >> >> I have a clean install of Anaconda 1.3.1 64-bit CE edition on a >> Windows 64-bit machine. >> >> Running the pytables self-test gives the following output: >> >> -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= >> PyTables version: 2.4.0 >> HDF5 version: 1.8.9 >> NumPy version: 1.6.2 >> Numexpr version: 2.0.1 (not using Intel's VML/MKL) >> Zlib version: 1.2.3 (in Python interpreter) >> Blosc version: 1.1.3 (2010-11-16) >> Cython version: 0.17.4 >> Python version: 2.7.3 |AnacondaCE 1.3.1 (64-bit)| (default, Jan 7 >> 2013, 09:47:12) [MSC v.1500 64 bit (AMD64)] >> Byte-ordering: little >> Detected cores: 4 >> -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= >> >> Then I get a *lot* of output to standard error - pages and pages of it >> - that looks something like this: >> >> C:\Anaconda\lib\site-packages\tables\filters.py:253: FiltersWarning: >> compression library ``bzip2`` is not available; using ``zlib`` instead >> % (complib, default_complib), FiltersWarning ) >> C:\Anaconda\lib\site-packages\tables\filters.py:253: FiltersWarning: >> compression library ``lzo`` is not available; using ``zlib`` instead >> % (complib, default_complib), FiltersWarning ) >> HDF5-DIAG: Error detected in HDF5 (1.8.9) thread 0: >> #000: ..\..\src\H5A.c line 241 in H5Acreate2(): not a type >> major: Invalid arguments to routine >> minor: Inappropriate type >> HDF5-DIAG: Error detected in HDF5 (1.8.9) thread 0: >> #000: ..\..\src\H5A.c line 920 in H5Awrite(): not an attribute >> major: Invalid arguments to routine >> minor: Inappropriate type >> EHDF5-DIAG: Error detected in HDF5 (1.8.9) thread 0: >> #000: ..\..\src\H5A.c line 241 in H5Acreate2(): not a type >> major: Invalid arguments to routine >> minor: Inappropriate type >> >> Is this something I'm doing wrong or is there something wrong with >> the package? >> >> Any help would be appreciated. >> >> Thanks, >> Jon >> >> ------------------------------------------------------------------------------ >> Free Next-Gen Firewall Hardware Offer >> Buy your Sophos next-gen firewall before the end March 2013 >> and get the hardware for free! Learn more. >> http://p.sf.net/sfu/sophos-d2d-feb >> _______________________________________________ >> Pytables-users mailing list >> Pyt...@li... >> <mailto:Pyt...@li...> >> https://lists.sourceforge.net/lists/listinfo/pytables-users >> >> >> >> >> ------------------------------------------------------------------------------ >> Free Next-Gen Firewall Hardware Offer >> Buy your Sophos next-gen firewall before the end March 2013 >> and get the hardware for free! Learn more. >> http://p.sf.net/sfu/sophos-d2d-feb >> >> >> _______________________________________________ >> Pytables-users mailing list >> Pyt...@li... >> https://lists.sourceforge.net/lists/listinfo/pytables-users > > > -- > Francesc Alted > > > ------------------------------------------------------------------------------ > Free Next-Gen Firewall Hardware Offer > Buy your Sophos next-gen firewall before the end March 2013 > and get the hardware for free! Learn more. > http://p.sf.net/sfu/sophos-d2d-feb > _______________________________________________ > Pytables-users mailing list > Pyt...@li... > https://lists.sourceforge.net/lists/listinfo/pytables-users |
