First public release of SymCA, an add-on package for PySCeS that does symbolic metabolic control analysis (MCA) and calculates control patterns (terms in the expressions of the control coefficients of MCA).
Source archives (tar.gz and zip) as well as a Win 32 binary for Python 2.6 provided.
Requires PySCeS and Maxima (http://maxima.sourceforge.net).
For more information refer to "INSTALL.txt" in the "docs" directory of the source package.
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I just found SymCA so I tried it out. I think I may I have found one bug, if the reaction names are called J1, J2 etc in the psc file, I get the following error when I call sym.doSca():
psc_val = getattr(self._psc,i)
AttributeError: PysMod instance has no attribute 'J_J_1'
If I change the reaction names to R1, R2 etc, it works ok.
Herbert Sauro
If you would like to refer to this comment somewhere else in this project, copy and paste the following link:
First public release of SymCA, an add-on package for PySCeS that does symbolic metabolic control analysis (MCA) and calculates control patterns (terms in the expressions of the control coefficients of MCA).
Source archives (tar.gz and zip) as well as a Win 32 binary for Python 2.6 provided.
Requires PySCeS and Maxima (http://maxima.sourceforge.net).
For more information refer to "INSTALL.txt" in the "docs" directory of the source package.
Excellent stuff, I'll put a notice on the main site next week.
I just found SymCA so I tried it out. I think I may I have found one bug, if the reaction names are called J1, J2 etc in the psc file, I get the following error when I call sym.doSca():
psc_val = getattr(self._psc,i)
AttributeError: PysMod instance has no attribute 'J_J_1'
If I change the reaction names to R1, R2 etc, it works ok.
Herbert Sauro