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#12 SBMl import fails when modifierSpeciesReference has sboTerm

open
None
7
2011-07-05
2011-07-04
Anonymous
No

In any reaction, when a modifier is listed as:

<listOfModifiers>
<modifierSpeciesReference species="species_1"/>
</listOfModifiers>

SBML import works perfectly fine. However, as soon as an sboTerm is set, it fails:

<listOfModifiers>
<modifierSpeciesReference species="species_1" sboTerm="SBO:0000461"/>
</listOfModifiers>

PySCes should just ignore the sboTerm here and read the "species" attribute only. File with exact error attached.

Discussion

  • Brett Olivier

    Brett Olivier - 2011-07-05
    • priority: 5 --> 7
    • assigned_to: nobody --> bgoli
     
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