pyrx 0.9.3_error starting pyrx on macbook.

[birendra kumar shrestha]

Traceback (most recent call last):
File "/Library/PyRx/0.9.3/runPyRx.py", line 89, in <module>
startPyRx()
File "/Library/PyRx/0.9.3/runPyRx.py", line 38, in startPyRx
frame = MainFrame(None, -1, size=(width, height-200))
File "/Library/PyRx/0.9.3/Python.framework/Versions/2.6/lib/python2.6/site-packages/PyRx/wxMainFrame.py", line 164, in init
self.pmv = vtkAdaptor()
File "/Library/PyRx/0.9.3/Python.framework/Versions/2.6/lib/python2.6/site-packages/PyRx/vtkAdaptor.py", line 26, in init
self.mv = MoleculeViewer(logMode = 'overwrite', customizer='./.empty', master=None,title='pmv', withShell= 0,verbose=False, gui = False)
File "/Library/PyRx/0.9.3/Python.framework/Versions/2.6/lib/python2.6/site-packages/Pmv/moleculeViewer.py", line 971, in init
trapExceptions=trapExceptions)
File "/Library/PyRx/0.9.3/Python.framework/Versions/2.6/lib/python2.6/site-packages/ViewerFramework/VF.py", line 506, in init
self.userpref.loadSettings()
File "/Library/PyRx/0.9.3/Python.framework/Versions/2.6/lib/python2.6/site-packages/mglutil/preferences.py", line 138, in loadSettings
self.set(key, value)
File "/Library/PyRx/0.9.3/Python.framework/Versions/2.6/lib/python2.6/site-packages/mglutil/preferences.py", line 107, in set
cb(name,oldValue, value)
File "/Library/PyRx/0.9.3/Python.framework/Versions/2.6/lib/python2.6/site-packages/ViewerFramework/VF.py", line 731, in startupDirPref_cb
root = self.setUserPreference.form.root
AttributeError: SetUserPreference instance has no attribute 'form'

Problem starting PyRx. Please submit a bug report to fix this: http://pyrx.sourceforge.net/faq

[Sarkis Dallakian]

Hi Birendra,

Thank you for the message and sorry about that. I would be happy to help fixing this.

Please confirm that this was working previously.

Also, please open Terminal from Applications>Utilities>Terminal and run

mv ~/.mgltools ~/mgltools_

If the problem persist, can I get a remote access to this macbook to provide the best support possible.

Thank you,
Sargis

[Krish Wadhwani]

I am a Mac user and I downloaded PyRx-0.8.dmg and tried to mount it on Disk Utility, yet it did not work. I would greatly appreciate any assitance. Thanks!

[Krish Wadhwani]

Essentially, PyRx-0.8.dmg won't even open on my Mac. When I control click or double click or right click on PyRx-0.8.dmg, nothing happens- nothing pops or shows up. Once again, I would greatly appreciate any assistance.

[Edwin Alcantara]

Hi Sarkis,

I am having a problem starting my copy o Pyrx 0.9.4 with the ollowign error message:

Traceback (most recent call last):
File "/Library/PyRx/0.9.3/runPyRx.py", line 89, in <module>
startPyRx()
File "/Library/PyRx/0.9.4/runPyRx.py", line 38, in startPyRx
frame = MainFrame(None, -1, size=(width, height-200))
File "/Library/PyRx/0.9.4/Python.framework/Versions/2.6/lib/python2.6/site-packages/PyRx/wxMainFrame.py", line 164, in init
self.pmv = vtkAdaptor()
File "/Library/PyRx/0.9.4/Python.framework/Versions/2.6/lib/python2.6/site-packages/PyRx/vtkAdaptor.py", line 26, in init
self.mv = MoleculeViewer(logMode = 'overwrite', customizer='./.empty', master=None,title='pmv', withShell= 0,verbose=False, gui = False)
File "/Library/PyRx/0.9.4/Python.framework/Versions/2.6/lib/python2.6/site-packages/Pmv/moleculeViewer.py", line 971, in init
trapExceptions=trapExceptions)
File "/Library/PyRx/0.9.4/Python.framework/Versions/2.6/lib/python2.6/site-packages/ViewerFramework/VF.py", line 506, in init
self.userpref.loadSettings()
File "/Library/PyRx/0.9.4/Python.framework/Versions/2.6/lib/python2.6/site-packages/mglutil/preferences.py", line 138, in loadSettings
self.set(key, value)
File "/Library/PyRx/0.9.4/Python.framework/Versions/2.6/lib/python2.6/site-packages/mglutil/preferences.py", line 107, in set
cb(name,oldValue, value)
File "/Library/PyRx/0.9.4/Python.framework/Versions/2.6/lib/python2.6/site-packages/ViewerFramework/VF.py", line 731, in startupDirPref_cb
root = self.setUserPreference.form.root
AttributeError: SetUserPreference instance has no attribute 'form'
Problem starting PyRx. Please submit a bug report to fix this: http://pyrx.sourceforge.net/faq</module>

Please help. Thanks

[Sarkis Dallakian]

Hi Edwin,

In addition to what I recommended here, I also found two other tickets:
https://sourceforge.net/p/pyrx/tickets/17
https://sourceforge.net/p/pyrx/tickets/32

Have you tried mv ~/.mgltools ~/mgltools_ or replacing your /Library/PyRx/0.9.4/Python.framework/Versions/2.6/lib/python2.6/site-packages/ViewerFramework/VF.py with the one I posted in the first link above?

Thank you for using PyRx.

[Edwin Alcantara]

Hi Sarkis,

Thanks for your reply. I tried your suggestions but to no avail. There
seems to be a problem during installation. When I checked it, the PyRx
folder is not in the Library directory. I can't locate where it is.

Thanks again,

Edwin

On Tue, Jun 9, 2020 at 10:02 AM Sarkis Dallakian sarkiss@users.sourceforge.net wrote:

Hi Edwin,

In addition to what I recommended here, I also found two other tickets:
https://sourceforge.net/p/pyrx/tickets/17
https://sourceforge.net/p/pyrx/tickets/32

Have you tried mv ~/.mgltools ~/mgltools_ or replacing your
/Library/PyRx/0.9.4/Python.framework/Versions/2.6/lib/python2.6/site-packages/ViewerFramework/VF.py
with the one I posted in the first link above?

Thank you for using PyRx.

pyrx 0.9.3_error starting pyrx on macbook.
https://sourceforge.net/p/pyrx/discussion/general/thread/418577a7/?limit=25#244d

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[Sarkis Dallakian]

Hi Edwin,

It might be under /System/Library depending on your version of Mac OS.  Is this a new install or something changed and it stopped working?