Pyntrez Code
Command-line, Entrez, NCBI e-utilities client, written in Python
Status: Planning
Brought to you by:
osjo2019
File | Date | Author | Commit |
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sample | 2014-12-02 |
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[84aed7] Initial project commit |
.gitignore | 2014-12-02 |
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[84aed7] Initial project commit |
README.txt | 2014-12-02 |
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[84aed7] Initial project commit |
__init__.pyc | 2014-12-02 |
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[84aed7] Initial project commit |
esrchsmry.py | 2014-12-02 |
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[84aed7] Initial project commit |
eutil.py | 2014-12-02 |
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[84aed7] Initial project commit |
eutil.pyc | 2014-12-02 |
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[84aed7] Initial project commit |
querypipe.py | 2014-12-02 |
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[84aed7] Initial project commit |
querypipe.pyc | 2014-12-02 |
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[84aed7] Initial project commit |
xml2tab.py | 2014-12-02 |
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[84aed7] Initial project commit |
xml2tab.pyc | 2014-12-02 |
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[84aed7] Initial project commit |
i. esrchsmry.py: Parse out relevant information from the XML formatted data returned by e-utility Esearch: QueryTranslation, Count, RetMax, RetStart, QueryKey, WebEnv, IdList. ii. eutil.py: Client for NCBI eutilities. No restrictions. iii. querypipe.py: Client that allows multiple queries to be posted with one execution. Created for e-utility Esearch (Don't know what happens if another utility is chosen; hence with restrictions). A comma-delimited list of queries (ie. search words, for instance drug names, is supplied and a data summary and id-list returned for convenient use with eutil.py. The module depends on "eutil.py", and that the latter is located in the same directory as this one. iv. xml2tab.py: Convert XML formatted file to tabular file. Quick and dirty.