Pyntrez Code
Command-line, Entrez, NCBI e-utilities client, written in Python
Status: Planning
Brought to you by:
osjo2019
| File | Date | Author | Commit |
|---|---|---|---|
| sample | 2014-12-02 |
|
[84aed7] Initial project commit |
| .gitignore | 2014-12-02 |
|
[84aed7] Initial project commit |
| README.txt | 2014-12-02 |
|
[84aed7] Initial project commit |
| __init__.pyc | 2014-12-02 |
|
[84aed7] Initial project commit |
| esrchsmry.py | 2014-12-02 |
|
[84aed7] Initial project commit |
| eutil.py | 2014-12-02 |
|
[84aed7] Initial project commit |
| eutil.pyc | 2014-12-02 |
|
[84aed7] Initial project commit |
| querypipe.py | 2014-12-02 |
|
[84aed7] Initial project commit |
| querypipe.pyc | 2014-12-02 |
|
[84aed7] Initial project commit |
| xml2tab.py | 2014-12-02 |
|
[84aed7] Initial project commit |
| xml2tab.pyc | 2014-12-02 |
|
[84aed7] Initial project commit |
i. esrchsmry.py:
Parse out relevant information from the XML formatted data
returned by e-utility Esearch: QueryTranslation, Count, RetMax,
RetStart, QueryKey, WebEnv, IdList.
ii. eutil.py:
Client for NCBI eutilities. No restrictions.
iii. querypipe.py:
Client that allows multiple queries to be posted with one
execution. Created for e-utility Esearch (Don't know what
happens if another utility is chosen; hence with restrictions).
A comma-delimited list of queries (ie. search words, for instance
drug names, is supplied and a data summary and id-list returned
for convenient use with eutil.py. The module depends on
"eutil.py", and that the latter is located in the same directory
as this one.
iv. xml2tab.py:
Convert XML formatted file to tabular file. Quick and dirty.