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From: <thamelry@bi...> - 2005-07-28 21:23:33
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> All but one of the PyObject_Print statements are gone (I just > deleted the one I missed which is a debug print only when raising > an exception if you illegally slice a communicator). Great - thanks. > I haven't verified the leak status though I did plug some holes > in the 2.4b1 release. Is there a mocapy run that illustrates the > problem? I could use it in the release test suite then. I've got a small test script that illustrates the problem - I'll send it tomorrow. Best regards, -Thomas |
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From: Pat Miller <patmiller@ll...> - 2005-07-28 21:01:59
|
> pyMPI_comm.c, pyMPI_comm_collective.c and pyMPI_comm_misc.c > contain PyObject_Print statements that print out a lot of what All but one of the PyObject_Print statements are gone (I just deleted the one I missed which is a debug print only when raising an exception if you illegally slice a communicator). I haven't verified the leak status though I did plug some holes in the 2.4b1 release. Is there a mocapy run that illustrates the problem? I could use it in the release test suite then. Pat -- Pat Miller | (925) 423-0309 | http://www.llnl.gov/CASC/people/pmiller Be the change you want to see in the world. -- Mahatma Gandhi (1869-1948) |
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From: <thamelry@bi...> - 2005-07-28 16:15:29
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> Thomas > > Can you explain what the problem of the extra stdout output is? Pat > probably > knows, but I'm not sure what this means. Hi Julian, pyMPI_comm.c, pyMPI_comm_collective.c and pyMPI_comm_misc.c contain PyObject_Print statements that print out a lot of what seems to be debugging info. This generates a huge amount of irrelevant output that clogs log files. I'm very near Mocapy 1.0 - a toolkit that does parallelized learning and inference in Dynamic Bayesian Networks (https://sourceforge.net/projects/mocapy/). It depends on pyMPI so I'd like to see these things fixed before I claim Mocapy is ready-to-use. The memory leak problem is particularly problematic, of course, since Mocapy typically runs for several days. Cheers, -Thomas |
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From: Julian Cook <rjcookusa@cs...> - 2005-07-28 15:56:05
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Thomas Can you explain what the problem of the extra stdout output is? Pat probably knows, but I'm not sure what this means. Tks Julian Cook FNX Ltd -----Original Message----- From: pympi-users-admin@... [mailto:pympi-users-admin@...]On Behalf Of Thomas Hamelryck Sent: Thursday, July 28, 2005 3:05 AM To: Pat Miller; pympi-users@... Subject: Re: [Pympi-users] pyMPI 2.4 beta 2 available.... Hi Pat, On Wednesday 27 July 2005 23:57, Pat Miller wrote: > Thanks to Julian, I uncovered a bad bug in pack/unpack in which > short strings were sometimes truncated with an EOF error. You > should strongly consider downloading 2.4b2 to replace any 2.4b1 > version you have. I was wondering if the memory leak problem associated with buffer2 (I submitted a patch for this) and the problem of the extra stdout output are fixed as well? Best regards & thanks for a great tool, -- Thomas Hamelryck, Postdoctoral researcher Bioinformatics center Institute of Molecular Biology and Physiology University of Copenhagen Universitetsparken 15 Bygning 10 2100 Copenhagen, Denmark --- http://www.binf.ku.dk/users/thamelry/ ------------------------------------------------------- SF.Net email is Sponsored by the Better Software Conference & EXPO September 19-22, 2005 * San Francisco, CA * Development Lifecycle Practices Agile & Plan-Driven Development * Managing Projects & Teams * Testing & QA Security * Process Improvement & Measurement * http://www.sqe.com/bsce5sf _______________________________________________ Pympi-users mailing list Pympi-users@... https://lists.sourceforge.net/lists/listinfo/pympi-users |
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From: Thomas Hamelryck <thamelry@bi...> - 2005-07-28 07:20:48
|
Hi Pat, On Wednesday 27 July 2005 23:57, Pat Miller wrote: > Thanks to Julian, I uncovered a bad bug in pack/unpack in which > short strings were sometimes truncated with an EOF error. You > should strongly consider downloading 2.4b2 to replace any 2.4b1 > version you have. I was wondering if the memory leak problem associated with buffer2 (I submitted a patch for this) and the problem of the extra stdout output are fixed as well? Best regards & thanks for a great tool, -- Thomas Hamelryck, Postdoctoral researcher Bioinformatics center Institute of Molecular Biology and Physiology University of Copenhagen Universitetsparken 15 Bygning 10 2100 Copenhagen, Denmark --- http://www.binf.ku.dk/users/thamelry/ |