#37 ppc64le/xl compilers: 'make check' 2 failures

[James Ostrander]

Hi,

When I compile pyMPI with an MPI that was compiled with the IBM compilers (xlc, xlC, xlf), I am able to get the build to succeed, but 'make check' reports two errors.

Here is my configure:
./configure --build=powerpc64le-redhat-linux-gnu CPPFLAGS=-lpython2.7 -I/usr/lib64/python2.7/site-packages/numpy/core/include/ CFLAGS=-lpython2.7 -I/usr/lib64/python2.7/site-packages/numpy/core/include/

Here are the errors (abbreviated):

pyMPI_comm_misc_011

--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 0 in communicator MPI COMMUNICATOR 3 DUP FROM 0
with errorcode 1.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------
FAIL: micro_tests/pyMPI_comm_misc_011

pyMPI_request_002

[sys-84628:09406] * Process received signal *
[sys-84628:09406] Signal: Segmentation fault (11)
[sys-84628:09406] Signal code: Address not mapped (1)
[sys-84628:09406] Failing at address: 0x1
[sys-84628:09406] [ 0] [0x3fff8bc80478]
[sys-84628:09406] [ 1] [0x0]
[sys-84628:09406] [ 2] /usr/local/lib/libmpi.so.0(PMPI_Cancel+0x108)[0x3fff8b723328]
[sys-84628:09406] [ 3] pyMPI[0x100129fc]
[sys-84628:09406] [ 4] /lib64/libpython2.7.so.1.0(+0xc5098)[0x3fff8ba95098]
[sys-84628:09406] [ 5] /lib64/libpython2.7.so.1.0(PyDict_SetItem+0xcc)[0x3fff8ba9a17c]
[sys-84628:09406] [ 6] /lib64/libpython2.7.so.1.0(_PyModule_Clear+0x1e4)[0x3fff8baa06f4]
[sys-84628:09406] [ 7] /lib64/libpython2.7.so.1.0(PyImport_Cleanup+0x5cc)[0x3fff8bb50b3c]
[sys-84628:09406] [ 8] /lib64/libpython2.7.so.1.0(Py_Finalize+0x17c)[0x3fff8bb6c47c]
[sys-84628:09406] [ 9] /lib64/libpython2.7.so.1.0(Py_Main+0x968)[0x3fff8bb88ba8]
[sys-84628:09406] [10] pyMPI(pyMPI_Main_with_communicator+0x2a8)[0x10009a48]
[sys-84628:09406] [11] pyMPI(pyMPI_Main+0x40)[0x10009b20]
[sys-84628:09406] [12] pyMPI(main+0x34)[0x10009754]
[sys-84628:09406] [13] /lib64/power8/libc.so.6(+0x24580)[0x3fff8b484580]
[sys-84628:09406] [14] /lib64/power8/libc.so.6(libc_start_main+0xc4)[0x3fff8b484774]
[sys-84628:09406] * End of error message *
/bin/sh: line 4:  9406 Segmentation fault      PATH=.:$PATH ${dir}$tst
FAIL: micro_tests/pyMPI_request_002**

=======================
2 of 89 tests failed
(19 tests were not run)
=======================
make[1]: *** [check-TESTS] Error 1
make[1]: Leaving directory `/home/u0017592/projects/pyMPI-2.5b0'
make: *** [check-am] Error 2

Any help or insight would be appreciated. I looked around but didn't see any more in-depth test output.

Attached: configure.log & full make check output.

[James Ostrander]

Aside from in the title, I forgot to mention that I'm on ppc64le (POWER8) architecture.

[Patrick Miller]

I don't have access to any POWER machines, but I'll try and make some informed guesses this weekend when I have a little time.

[James Ostrander]

Greatly appreciated! By the way, POWER8 VMs are available for free to open source developers at: https://www-356.ibm.com/partnerworld/wps/servlet/ContentHandler/stg_com_sys_power-development-platform

[Patrick Miller]

Great! I'll try it in the emulator!
On Tue, Dec 13, 2016 at 9:58 AM James Ostrander jlostran@users.sf.net
wrote:

Greatly appreciated! By the way, POWER8 VMs are available for free to open
source developers at:
https://www-356.ibm.com/partnerworld/wps/servlet/ContentHandler/stg_com_sys_power-development-platform

---

• [bugs:#37] https://sourceforge.net/p/pympi/bugs/37/ ppc64le/xl
  compilers: 'make check' 2 failures*

Status: open

Group:

Created: Fri Dec 09, 2016 08:33 PM UTC by James Ostrander

Last Updated: Fri Dec 09, 2016 08:45 PM UTC

Owner: nobody

Attachments:

• config.log
  https://sourceforge.net/p/pympi/bugs/37/attachment/config.log (58.5
  kB; application/octet-stream)

• make-check.log
  https://sourceforge.net/p/pympi/bugs/37/attachment/make-check.log
  (11.9 kB; application/octet-stream)

Hi,

When I compile pyMPI with an MPI that was compiled with the IBM compilers
(xlc, xlC, xlf), I am able to get the build to succeed, but 'make check'
reports two errors.

Here is my configure:

./configure --build=powerpc64le-redhat-linux-gnu CPPFLAGS=-lpython2.7
-I/usr/lib64/python2.7/site-packages/numpy/core/include/ CFLAGS=-lpython2.7
-I/usr/lib64/python2.7/site-packages/numpy/core/include/

Here are the errors (abbreviated):

pyMPI_comm_misc_011

---

MPI_ABORT was invoked on rank 0 in communicator MPI COMMUNICATOR 3 DUP FROM 0

with errorcode 1.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.

You may or may not see output from other processes, depending on

exactly when Open MPI kills them.

---

FAIL: micro_tests/pyMPI_comm_misc_011

pyMPI_request_002

[sys-84628:09406] * Process received signal *

[sys-84628:09406] Signal: Segmentation fault (11)

[sys-84628:09406] Signal code: Address not mapped (1)

[sys-84628:09406] Failing at address: 0x1

[sys-84628:09406] [ 0] [0x3fff8bc80478]

[sys-84628:09406] [ 1] [0x0]

[sys-84628:09406] [ 2] /usr/local/lib/libmpi.so.0(PMPI_Cancel+0x108)[0x3fff8b723328]

[sys-84628:09406] [ 3] pyMPI[0x100129fc]

[sys-84628:09406] [ 4] /lib64/libpython2.7.so.1.0(+0xc5098)[0x3fff8ba95098]

[sys-84628:09406] [ 5] /lib64/libpython2.7.so.1.0(PyDict_SetItem+0xcc)[0x3fff8ba9a17c]

[sys-84628:09406] [ 6] /lib64/libpython2.7.so.1.0(_PyModule_Clear+0x1e4)[0x3fff8baa06f4]

[sys-84628:09406] [ 7] /lib64/libpython2.7.so.1.0(PyImport_Cleanup+0x5cc)[0x3fff8bb50b3c]

[sys-84628:09406] [ 8] /lib64/libpython2.7.so.1.0(Py_Finalize+0x17c)[0x3fff8bb6c47c]

[sys-84628:09406] [ 9] /lib64/libpython2.7.so.1.0(Py_Main+0x968)[0x3fff8bb88ba8]

[sys-84628:09406] [10] pyMPI(pyMPI_Main_with_communicator+0x2a8)[0x10009a48]

[sys-84628:09406] [11] pyMPI(pyMPI_Main+0x40)[0x10009b20]

[sys-84628:09406] [12] pyMPI(main+0x34)[0x10009754]

[sys-84628:09406] [13] /lib64/power8/libc.so.6(+0x24580)[0x3fff8b484580]

[sys-84628:09406] [14] /lib64/power8/libc.so.6(libc_start_main+0xc4)[0x3fff8b484774]

[sys-84628:09406] * End of error message *

/bin/sh: line 4: 9406 Segmentation fault PATH=.:$PATH ${dir}$tst

FAIL: micro_tests/pyMPI_request_002**

=======================

2 of 89 tests failed

(19 tests were not run)

=======================

make[1]: *** [check-TESTS] Error 1

make[1]: Leaving directory `/home/u0017592/projects/pyMPI-2.5b0'

make: *** [check-am] Error 2

Any help or insight would be appreciated. I looked around but didn't see
any more in-depth test output.

Attached: configure.log & full make check output.

---

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