pymol-users

Re: [PyMOL] comments ?

[Sebastien M. <seb...@ig...>]

> Yes -- this is a bug -- thanks for pointing it out.
>=20
> Cheers,
> Warren
>=20
>=20

It seems that the 'print "..."' commands is unrecognized in p1m files too=
.

>>
>>>But, '#' doesn't work in p1m file.
>>>    Error: unrecognized keyword: #second The # line=20
>>
>>involves an error=20
>>
>>>but the script goes on.
>>
>>I think indeed you found a bug with the parsing of p1m files.
>>I have the same behaviour on my Linux computer.
>>
>>Nice choice of colors by the way.
>>
>>Cheers,
>>
>>Zac

--=20
S=E9bastien Moretti
http://www.igs.cnrs-mrs.fr/
CNRS - IGS
31 chemin Joseph Aiguier
13402 Marseille cedex

RE: [PyMOL] comments ?

[Schubert, C. [PRDUS] <CSC...@pr...>]

Just for the sake of the uninitiated ....

What are .p1m files and how do they differ from regular .pml files. I took a
quick look at Sebastians file and it looked pretty much like a regular .pml
file to me. 


Cheers,

	Carsten

-----Original Message-----
From: Ezequiel H Panepucci [mailto:za...@pa...]
Sent: Tuesday, August 02, 2005 10:05 AM
To: Sebastien Moretti
Cc: pymol-users
Subject: Re: [PyMOL] comments ?



> But, '#' doesn't work in p1m file.
>     Error: unrecognized keyword: #second
> The # line involves an error but the script goes on.

I think indeed you found a bug with the parsing of p1m files.
I have the same behaviour on my Linux computer.

Nice choice of colors by the way.

Cheers,

Zac




-------------------------------------------------------
SF.Net email is sponsored by: Discover Easy Linux Migration Strategies
from IBM. Find simple to follow Roadmaps, straightforward articles,
informative Webcasts and more! Get everything you need to get up to
speed, fast. http://ads.osdn.com/?ad_id=7477&alloc_id=16492&op=click
_______________________________________________
PyMOL-users mailing list
PyM...@li...
https://lists.sourceforge.net/lists/listinfo/pymol-users

Re: [PyMOL] comments ?

[Sebastien M. <seb...@ig...>]

> Just for the sake of the uninitiated ....
>=20
> What are .p1m files and how do they differ from regular .pml files. I=20
> took a quick look at Sebastians file and it looked pretty much like a=20
> regular .pml file to me.
>=20
>=20
> Cheers,
>=20

.p1m files are web oriented. With them, you can embedded whole=20
structures and PyMOL commands in one file.

You can do the same with a pml file here and a load command which loads=20
the pdb file there. But that is two files instead of only one.

>=20
>  > But, '#' doesn't work in p1m file.
>  >     Error: unrecognized keyword: #second
>  > The # line involves an error but the script goes on.
>=20
> I think indeed you found a bug with the parsing of p1m files.
> I have the same behaviour on my Linux computer.
>=20
> Nice choice of colors by the way.
>=20
> Cheers,
>=20
> Zac

--=20
S=E9bastien Moretti
http://www.igs.cnrs-mrs.fr/
CNRS - IGS
31 chemin Joseph Aiguier
13402 Marseille cedex

RE: [PyMOL] comments ?

[Warren D. <wa...@de...>]

That's by design...we can't allow calling of Python from p1m files.

--
Warren L. DeLano, Ph.D.                    =20
Principal Scientist

. DeLano Scientific LLC =20
. 400 Oyster Point Blvd., Suite 213          =20
. South San Francisco, CA 94080 USA  =20
. Biz:(650)-872-0942  Tech:(650)-872-0834    =20
. Fax:(650)-872-0273  Cell:(650)-346-1154
. mailto:wa...@de...     =20
=20

> -----Original Message-----
> From: Sebastien Moretti [mailto:seb...@ig...]=20
> Sent: Thursday, August 04, 2005 12:17 AM
> To: Warren DeLano; pymol-users
> Subject: Re: [PyMOL] comments ?
>=20
> > Yes -- this is a bug -- thanks for pointing it out.
> >=20
> > Cheers,
> > Warren
> >=20
> >=20
>=20
> It seems that the 'print "..."' commands is unrecognized in=20
> p1m files too.
>=20
> >>
> >>>But, '#' doesn't work in p1m file.
> >>>    Error: unrecognized keyword: #second The # line
> >>
> >>involves an error
> >>
> >>>but the script goes on.
> >>
> >>I think indeed you found a bug with the parsing of p1m files.
> >>I have the same behaviour on my Linux computer.
> >>
> >>Nice choice of colors by the way.
> >>
> >>Cheers,
> >>
> >>Zac
>=20
> --
> S=E9bastien Moretti
> http://www.igs.cnrs-mrs.fr/
> CNRS - IGS
> 31 chemin Joseph Aiguier
> 13402 Marseille cedex
>=20
>=20
>=20

Re: [PyMOL] comments ?

[Michael C. <msc...@sy...>]

Hi 

I have installed version 0.98 on my new dual processor machine running
windows XP. Pymol runs fine, but when trying to load a large PDB file
(~4Mb), the program crashes and I get a runtime error:

"This application has requested the Runtime to terminate it in an
unusual way"


Does anyone have some advice?


Thanks,

Michael






Michael S. Cosgrove, Ph.D.
Assistant Professor
Syracuse University
Department of Biology
406D Lyman Hall
108 College Place
Syracuse, NY 13244

Phone: (315) 443-2964
Fax: (315) 443-2156
Email: msc...@sy...