From: Roger D. <rb...@he...> - 2004-07-26 09:41:55
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Hi everyone, I've recently updated to the 0.97 release of pymol and although it ran fine to start with, it's now generating a segmentation fault. I installed from the * pymol-0_97-bin-linux-libc6-i386.tgz* <http://prdownloads.sourceforge.net/pymol/pymol-0_97-bin-linux-libc6-i386.tgz?download> file into /usr/local/pymol and ran setup.sh. Then when running the pymol.com script I get the following: ./pymol.com: line 14: 31156 Segmentation fault $PYMOL_PATH/pymol.exe $* I'm not sure exactly what's causing this and any help would be appreciated. I've tried completely removing the pymol directory and reinstalling but I still get the same error. Cheers Roger |
From: Filipe M. <fi...@xr...> - 2004-07-26 11:03:16
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On Mon, 26 Jul 2004 10:40:47 +0100, Roger Dodd <rb...@he...> =20 wrote: > Hi everyone, > > I've recently updated to the 0.97 release of pymol and although it ran = =20 > fine to start with, it's now generating a segmentation fault. I =20 > installed from the * pymol-0_97-bin-linux-libc6-i386.tgz* =20 > <http://prdownloads.sourceforge.net/pymol/pymol-0_97-bin-linux-libc6-i3= 86.tgz?download> =20 > file into /usr/local/pymol and ran setup.sh. Then when running the =20 > pymol.com script I get the following: > > ./pymol.com: line 14: 31156 Segmentation fault =20 > $PYMOL_PATH/pymol.exe $* > > I'm not sure exactly what's causing this and any help would be =20 > appreciated. I've tried completely removing the pymol directory and =20 > reinstalling but I still get the same error. $PYMOL_PATH/pymol.exe $* <- this looks suspicious. Did you tried to compile pymol as a monolythic thing? I don't beleive tha= t =20 still works. I use $PYMOL_PATH/ext/bin/python $PYMOL_PATH/modules/pymol/__init__.py $* I'll send you my Rules.make and pymol.com. I was able to build it simply with a symlink from ext to /usr > > Cheers > > Roger > > > ------------------------------------------------------- > This SF.Net email is sponsored by BEA Weblogic Workshop > FREE Java Enterprise J2EE developer tools! > Get your free copy of BEA WebLogic Workshop 8.1 today. > http://ads.osdn.com/?ad_id=3D4721&alloc_id=3D10040&op=3Dclick > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users > --=20 Don't go around saying the world owes you a living. The world owes you nothing. It was here first. -- Mark Twain |