pymol-users

[PyMOL] output formats

[<sco...@me...>]

Is there any way to output in any of the following file formats?
.max, .drf
.3ds, .prj
.ai
.dem, .xml, .ddf
.dwg, .dxf
.fbx
.htr
.ige, .igs, .iges
.ipt, .iam
.ls, .vw, .lp
.obj
.shp
.stl
.wrl, .wrz
You'll recognize the last two as VRML extensions. Thanks for your advice,
Scott Lujan
Redinbo Lab

Re: [PyMOL] output formats

[Jerome P. <j.p...@pa...>]

Hi,

I have work a little with .obj file.=20
I've written a script that translates OBJ file to PDB file. It is quite sim=
ple=20
to make the opposite.

=46or more information on obj format, you can read this resume:
http://www.fileformat.info/format/wavefrontobj/

You can also translate PyMOL CGO to OBJ file.

Cheers,

Jerome Pansanel

Le Mercredi 08 F=E9vrier 2006 05:03, sco...@me... a =E9crit=A0:
> Is there any way to output in any of the following file formats?
> .max, .drf
> .3ds, .prj
> .ai
> .dem, .xml, .ddf
> .dwg, .dxf
> .fbx
> .htr
> .ige, .igs, .iges
> .ipt, .iam
> .ls, .vw, .lp
> .obj
> .shp
> .stl
> .wrl, .wrz
> You'll recognize the last two as VRML extensions. Thanks for your advice,
> Scott Lujan
> Redinbo Lab
>
>
> -------------------------------------------------------
> This SF.net email is sponsored by: Splunk Inc. Do you grep through log
> files for problems?  Stop!  Download the new AJAX search engine that makes
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=3D121642
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> PyMOL-users mailing list
> PyM...@li...
> https://lists.sourceforge.net/lists/listinfo/pymol-users

Re: [PyMOL] output formats

[<sco...@me...>]

Thank you Jerome=2E

Do you know of any way to convert from =2Epov to any of the listed forma=
ts=3F More to the point=2C we=27re looking for an easy way to import mol=
ecules/surfaces/maps from pymol into our lab copy of 3D Studio=2C mostly=
 for lighting effects (tinted-=2C omnidirectional-=2C volume-=2C object-=
sourced lights=2C etc=2E) and some other nice features (glows=2C etc=2E)=
=2E We=27d be equally interested in ways to acheive these effects in pym=
ol=2E

----- Original Message -----
From=3A Jerome PANSANEL =3Cj=2Epansanel=40pansanel=2Enet=3E
Date=3A Wednesday=2C February 8=2C 2006 3=3A27 am
Subject=3A Re=3A =5BPyMOL=5D output formats
To=3A pymol-users=40lists=2Esourceforge=2Enet

=3E Hi=2C
=3E =

=3E I have work a little with =2Eobj file=2E =

=3E I=27ve written a script that translates OBJ file to PDB file=2E It i=
s =

=3E quite simple =

=3E to make the opposite=2E
=3E =

=3E For more information on obj format=2C you can read this resume=3A
=3E http=3A//www=2Efileformat=2Einfo/format/wavefrontobj/
=3E =

=3E You can also translate PyMOL CGO to OBJ file=2E
=3E =

=3E Cheers=2C
=3E =

=3E Jerome Pansanel
=3E =

=3E Le Mercredi 08 F=E9vrier 2006 05=3A03=2C scott=5Flujan=40med=2Eunc=2E=
edu a =E9crit =3A
=3E =3E Is there any way to output in any of the following file formats=3F=

=3E =3E =2Emax=2C =2Edrf
=3E =3E =2E3ds=2C =2Eprj
=3E =3E =2Eai
=3E =3E =2Edem=2C =2Exml=2C =2Eddf
=3E =3E =2Edwg=2C =2Edxf
=3E =3E =2Efbx
=3E =3E =2Ehtr
=3E =3E =2Eige=2C =2Eigs=2C =2Eiges
=3E =3E =2Eipt=2C =2Eiam
=3E =3E =2Els=2C =2Evw=2C =2Elp
=3E =3E =2Eobj
=3E =3E =2Eshp
=3E =3E =2Estl
=3E =3E =2Ewrl=2C =2Ewrz
=3E =3E You=27ll recognize the last two as VRML extensions=2E Thanks for=
 your =

=3E advice=2C=3E Scott Lujan
=3E =3E Redinbo Lab
=3E =3E
=3E =3E
=3E =3E -------------------------------------------------------
=3E =3E This SF=2Enet email is sponsored by=3A Splunk Inc=2E Do you grep=
 =

=3E through log
=3E =3E files for problems=3F  Stop!  Download the new AJAX search engin=
e =

=3E that makes
=3E =3E searching your log files as easy as surfing the  web=2E  DOWNLOA=
D =

=3E SPLUNK!=3E http=3A//sel=2Eas-
=3E us=2Efalkag=2Enet/sel=3Fcmd=3Dlnk=26kid=3D103432=26bid=3D230486=26da=
t=3D121642=3E =

=3E =5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=
=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=
=3E PyMOL-users =

=3E mailing list
=3E =3E PyMOL-users=40lists=2Esourceforge=2Enet
=3E =3E https=3A//lists=2Esourceforge=2Enet/lists/listinfo/pymol-users
=3E =

=3E =

=3E =

=3E -------------------------------------------------------
=3E This SF=2Enet email is sponsored by=3A Splunk Inc=2E Do you grep thr=
ough =

=3E log files
=3E for problems=3F  Stop!  Download the new AJAX search engine that mak=
es
=3E searching your log files as easy as surfing the  web=2E  DOWNLOAD =

=3E SPLUNK!http=3A//sel=2Eas-
=3E us=2Efalkag=2Enet/sel=3Fcmdgk=26kid=103432=26bid=230486=26dat=121642=
=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=
=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F=5F
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=3E 

Re: [PyMOL] output formats

[Jerome P. <jer...@ap...>]

Hi,

I think this software could be used:
http://www.tb-software.com/products3.html
http://www.tb-software.com/download/3dto3dsrc.zip

It's free (as in beer ideology).

Jerome Pansanel

Le Mercredi 08 F=E9vrier 2006 19:29, sco...@me... a =E9crit=A0:
> Thank you Jerome.
>
> Do you know of any way to convert from .pov to any of the listed formats?
> More to the point, we're looking for an easy way to import
> molecules/surfaces/maps from pymol into our lab copy of 3D Studio, mostly
> for lighting effects (tinted-, omnidirectional-, volume-, object-sourced
> lights, etc.) and some other nice features (glows, etc.). We'd be equally
> interested in ways to acheive these effects in pymol.
>
> ----- Original Message -----
> From: Jerome PANSANEL <j.p...@pa...>
> Date: Wednesday, February 8, 2006 3:27 am
> Subject: Re: [PyMOL] output formats
> To: pym...@li...
>
> > Hi,
> >
> > I have work a little with .obj file.
> > I've written a script that translates OBJ file to PDB file. It is
> > quite simple
> > to make the opposite.
> >
> > For more information on obj format, you can read this resume:
> > http://www.fileformat.info/format/wavefrontobj/
> >
> > You can also translate PyMOL CGO to OBJ file.
> >
> > Cheers,
> >
> > Jerome Pansanel
> >
> > Le Mercredi 08 F=E9vrier 2006 05:03, sco...@me... a =E9crit :
> > > Is there any way to output in any of the following file formats?
> > > .max, .drf
> > > .3ds, .prj
> > > .ai
> > > .dem, .xml, .ddf
> > > .dwg, .dxf
> > > .fbx
> > > .htr
> > > .ige, .igs, .iges
> > > .ipt, .iam
> > > .ls, .vw, .lp
> > > .obj
> > > .shp
> > > .stl
> > > .wrl, .wrz
> > > You'll recognize the last two as VRML extensions. Thanks for your
> >
> > advice,> Scott Lujan
> >
> > > Redinbo Lab
> > >
> > >
> > > -------------------------------------------------------
> > > This SF.net email is sponsored by: Splunk Inc. Do you grep
> >
> > through log
> >
> > > files for problems?  Stop!  Download the new AJAX search engine
> >
> > that makes
> >
> > > searching your log files as easy as surfing the  web.  DOWNLOAD
> >
> > SPLUNK!> http://sel.as-
> > us.falkag.net/sel?cmd=3Dlnk&kid=3D103432&bid=3D230486&dat=3D121642>
> > _______________________________________________> PyMOL-users
> > mailing list
> >
> > > PyM...@li...
> > > https://lists.sourceforge.net/lists/listinfo/pymol-users
> >
> > -------------------------------------------------------
> > This SF.net email is sponsored by: Splunk Inc. Do you grep through
> > log files
> > for problems?  Stop!  Download the new AJAX search engine that makes
> > searching your log files as easy as surfing the  web.  DOWNLOAD
> > SPLUNK!http://sel.as-
> > us.falkag.net/sel?cmdgk&kid=103432&bid#0486&dat=121642_________________=
______
> >________________________ PyMOL-users mailing list
> > PyM...@li...
> > https://lists.sourceforge.net/lists/listinfo/pymol-users
>
> -------------------------------------------------------
> This SF.net email is sponsored by: Splunk Inc. Do you grep through log
> files for problems?  Stop!  Download the new AJAX search engine that makes
> searching your log files as easy as surfing the  web.  DOWNLOAD SPLUNK!
> http://sel.as-us.falkag.net/sel?cmd=3Dlnk&kid=103432&bid#0486&dat=121642
> _______________________________________________
> PyMOL-users mailing list
> PyM...@li...
> https://lists.sourceforge.net/lists/listinfo/pymol-users

=2D-=20
Dr. Jerome PANSANEL
Scientific Computing System Manager
APTANOMICS - http://www.aptanomics.com
181-203, avenue Jean Jaures
69007 LYON
=46RANCE
T=E9l. : 0033 / (0)4 37 65 55 12
=46ax. : 0033 / (0)4 37 65 06 17