From: vijay <vij...@ya...> - 2006-09-16 14:20:47
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dear pymol users, I got a bug in pymol with .pl file produced by pdbsum clefts (see this link, http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl?pdbcode=1fcc&template=clefts.html&pdbcode=1fcc&r=speedfill open the rasmol format clefts file, it will open in .pl formate), which produces 3D coordinates with perl script to make different colors in the surface clefts based on the cleft volume and depth. when i download it as .pl file and it can be open by pymol or rasmol, the problem is the clefts which are shown in different colors by perl script is not working. what i am getting is all the clefts are colored in same, so i cant able to distinguish the clefts depth by color difference, here the problem is the perl coding for making colors is not recognized by the pymol or rasmol programs. can anyone help out on this bug. Regards, vijay --------------------------------- Find out what India is talking about on - Yahoo! Answers India Send FREE SMS to your friend's mobile from Yahoo! Messenger Version 8. Get it NOW |
From: gilleain t. <gil...@gm...> - 2006-09-16 14:52:30
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ummm. PY-mol not handling perl is not really a bug... :) gilleain On 9/16/06, vijay <vij...@ya...> wrote: > > dear pymol users, > I got a bug in pymol with .pl file produced by > pdbsum clefts (see this link, > http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl?pdbcode=1fcc&template=clefts.html&pdbcode=1fcc&r=speedfill open > the rasmol format clefts file, it will open in .pl formate), which produces > 3D coordinates with perl script to make different colors in the surface > clefts based on the cleft volume and depth. when i download it as .pl file > and it can be open by pymol or rasmol, the problem is the clefts which are > shown in different colors by perl script is not working. what i am getting > is all the clefts are colored in same, so i cant able to distinguish the > clefts depth by color difference, here the problem is the perl coding for > making colors is not recognized by the pymol or rasmol programs. > > can anyone help out on this bug. > > Regards, > vijay > > ------------------------------ > Find out what India is talking about on - Yahoo! Answers India<http://us.rd.yahoo.com/mail/in/yanswers/*http:/in.answers.yahoo.com/> > Send FREE SMS to your friend's mobile from Yahoo! Messenger Version 8. Get > it NOW<http://us.rd.yahoo.com/mail/in/messengertagline/*http:/in.messenger.yahoo.com> > > > ------------------------------------------------------------------------- > Using Tomcat but need to do more? Need to support web services, security? > Get stuff done quickly with pre-integrated technology to make your job > easier > Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo > http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 > > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > |