pymol-users

[PyMOL] pymol on amd64?

[Praedor A. <pr...@ya...>]

Is anyone running pymol on an AMD64 system?  If so, did you find a prebuilt=
=20
binary or did you build it yourself?  If you built it yourself...HOW DID YO=
U=20
DO IT?  I'd greatly appreciate help in this regard.

Thank you,

praedor
=2D-=20
The Reichstag fire is to Hitler as 9/11 is to Bush

Re: [PyMOL] pymol on amd64?

[Sabuj P. <sab...@va...>]

I use gentoo linux's portage to do all the compile work (emerge pymol).
From the ebuild it looks like you need these prerequisites:

python, pmw (python library), numeric (python library), tk, libpng,
zlib, and glut .



Praedor Atrebates wrote:
> Is anyone running pymol on an AMD64 system?  If so, did you find a prebuilt 
> binary or did you build it yourself?  If you built it yourself...HOW DID YOU 
> DO IT?  I'd greatly appreciate help in this regard.
> 
> Thank you,
> 
> praedor

Re: [PyMOL] pymol on amd64?

[Florian H. <Flo...@ch...>]

hi,

On Tuesday 11 April 2006 19:59, Praedor Atrebates wrote:
> Is anyone running pymol on an AMD64 system?  If so, did you find a prebui=
lt
> binary or did you build it yourself?  If you built it yourself...HOW DID
> YOU DO IT?  I'd greatly appreciate help in this regard.

also the normal 32 bit standalone executebale works for me on em64t cpu. Yo=
u=20
can find it at

http://delsci.com/rel/099/

don`t know if a special 64bit version is necessary if 32 bit version is=20
running without problems.
Os is Suse 10 for x86_64.


>
> Thank you,
>
> praedor

Greetings,

=46lorian

=2D-=20
=2D------------------------------------------------------------------------=
=2D-----
 Florian Haberl                       =20
 Computer-Chemie-Centrum  =20
 Universitaet Erlangen/ Nuernberg
 Naegelsbachstr 25
 D-91052 Erlangen
 Mailto: florian.haberl AT chemie.uni-erlangen.de
=2D------------------------------------------------------------------------=
=2D-----

Re: [PyMOL] pymol on amd64?

[Andrea S. <and...@gm...>]

Hi,
few weeks ago I had a problem with pymol-32bit on my laptop 64bit using sla=
md
Warren built a pymol for 64bit and you can download it from here:
http://delsci.com/beta/

In my case it worked.
Regards

andrea



2006/4/11, Florian Haberl <Flo...@ch...>:
> hi,
>
> On Tuesday 11 April 2006 19:59, Praedor Atrebates wrote:
> > Is anyone running pymol on an AMD64 system?  If so, did you find a preb=
uilt
> > binary or did you build it yourself?  If you built it yourself...HOW DI=
D
> > YOU DO IT?  I'd greatly appreciate help in this regard.
>
> also the normal 32 bit standalone executebale works for me on em64t cpu. =
You
> can find it at
>
> http://delsci.com/rel/099/
>
> don`t know if a special 64bit version is necessary if 32 bit version is
> running without problems.
> Os is Suse 10 for x86_64.
>
>
> >
> > Thank you,
> >
> > praedor
>
> Greetings,
>
> Florian
>
> --
> -------------------------------------------------------------------------=
------
>  Florian Haberl
>  Computer-Chemie-Centrum
>  Universitaet Erlangen/ Nuernberg
>  Naegelsbachstr 25
>  D-91052 Erlangen
>  Mailto: florian.haberl AT chemie.uni-erlangen.de
> -------------------------------------------------------------------------=
------
>
>
>


--
"La conoscenza libera il genere umano dalla superstizione"
J. Watson

Re: [PyMOL] pymol on amd64?

[Praedor A. <pr...@ya...>]

Great!  Thank you.  I've just finished trying and failing to get pymol to 
build again on my AMD64 Mandriva system.  It invariably fails quickly with:

layer0/Crystal.c:314:1: error: unterminated argument list invoking macro 
"sprintf"
layer0/Crystal.c: In function 'CrystalDump':
layer0/Crystal.c:201: error: syntax error at end of input
layer0/Crystal.c:201: warning: unused variable '_FBstr'
layer0/Crystal.c:199: warning: unused variable 'i'
layer0/Crystal.c:198: warning: unused variable 'G'
error: command 'gcc' failed with exit status 1

There must be a lib difference or gcc difference between the Mandriva 2006 
system and SuSE that apparently allows a 64 bit build to proceed.

praedor

On Wednesday 12 April 2006 04:18 am, Andrea Spitaleri wrote:
> Hi,
> few weeks ago I had a problem with pymol-32bit on my laptop 64bit using
> slamd Warren built a pymol for 64bit and you can download it from here:
> http://delsci.com/beta/
>
> In my case it worked.
> Regards
>
> andrea

Re: [PyMOL] pymol on amd64?

[Andrea S. <and...@gm...>]

Hi,
this should be a binary, so just installing it should work ...
try also to export the lib path (export or setenv LD_LIBRARY_PATH)

Regards

Andrea

2006/4/12, Praedor Atrebates <pr...@ya...>:
> Great!  Thank you.  I've just finished trying and failing to get pymol to
> build again on my AMD64 Mandriva system.  It invariably fails quickly wit=
h:
>
> layer0/Crystal.c:314:1: error: unterminated argument list invoking macro
> "sprintf"
> layer0/Crystal.c: In function 'CrystalDump':
> layer0/Crystal.c:201: error: syntax error at end of input
> layer0/Crystal.c:201: warning: unused variable '_FBstr'
> layer0/Crystal.c:199: warning: unused variable 'i'
> layer0/Crystal.c:198: warning: unused variable 'G'
> error: command 'gcc' failed with exit status 1
>
> There must be a lib difference or gcc difference between the Mandriva 200=
6
> system and SuSE that apparently allows a 64 bit build to proceed.
>
> praedor
>
> On Wednesday 12 April 2006 04:18 am, Andrea Spitaleri wrote:
> > Hi,
> > few weeks ago I had a problem with pymol-32bit on my laptop 64bit using
> > slamd Warren built a pymol for 64bit and you can download it from here:
> > http://delsci.com/beta/
> >
> > In my case it worked.
> > Regards
> >
> > andrea
>
>
>
> -------------------------------------------------------
> This SF.Net email is sponsored by xPML, a groundbreaking scripting langua=
ge
> that extends applications into web and mobile media. Attend the live webc=
ast
> and join the prime developer group breaking into this new coding territor=
y!
> http://sel.as-us.falkag.net/sel?cmd=3Dlnk&kid=3D110944&bid=3D241720&dat=
=3D121642
> _______________________________________________
> PyMOL-users mailing list
> PyM...@li...
> https://lists.sourceforge.net/lists/listinfo/pymol-users
>


--
"La conoscenza libera il genere umano dalla superstizione"
J. Watson

Re: [PyMOL] pymol on amd64?

[Praedor A. <pr...@ya...>]

Yes, this binary works just fine.  Thanks again. =20

I am still puzzled/unhappy that I cannot get the source to build on my AMD6=
4. =20
especially given that I've checked and rechecked to make sure the=20
dependencies are met.  It isn't just pymol...if any source that SHOULD buil=
d=20
fails to build I get unhappy, having to assume that there is something hidd=
en=20
"wrong" with my system which limits my capabilities.

praedor

On Wednesday 12 April 2006 07:36 am, Andrea Spitaleri wrote:
> Hi,
> this should be a binary, so just installing it should work ...
> try also to export the lib path (export or setenv LD_LIBRARY_PATH)
>
> Regards
>
> Andrea
>
> 2006/4/12, Praedor Atrebates <pr...@ya...>:
> > Great!  Thank you.  I've just finished trying and failing to get pymol =
to
> > build again on my AMD64 Mandriva system.  It invariably fails quickly
> > with:
> >
> > layer0/Crystal.c:314:1: error: unterminated argument list invoking macro
> > "sprintf"
> > layer0/Crystal.c: In function 'CrystalDump':
> > layer0/Crystal.c:201: error: syntax error at end of input
> > layer0/Crystal.c:201: warning: unused variable '_FBstr'
> > layer0/Crystal.c:199: warning: unused variable 'i'
> > layer0/Crystal.c:198: warning: unused variable 'G'
> > error: command 'gcc' failed with exit status 1
> >
> > There must be a lib difference or gcc difference between the Mandriva
> > 2006 system and SuSE that apparently allows a 64 bit build to proceed.
> >
> > praedor
> >
> > On Wednesday 12 April 2006 04:18 am, Andrea Spitaleri wrote:
> > > Hi,
> > > few weeks ago I had a problem with pymol-32bit on my laptop 64bit usi=
ng
> > > slamd Warren built a pymol for 64bit and you can download it from her=
e:
> > > http://delsci.com/beta/
> > >
> > > In my case it worked.
> > > Regards
> > >
> > > andrea
> >
> > -------------------------------------------------------
> > This SF.Net email is sponsored by xPML, a groundbreaking scripting
> > language that extends applications into web and mobile media. Attend the
> > live webcast and join the prime developer group breaking into this new
> > coding territory!
> > http://sel.as-us.falkag.net/sel?cmd=3Dlnk&kid=3D110944&bid=3D241720&dat=
=3D121642
> > _______________________________________________
> > PyMOL-users mailing list
> > PyM...@li...
> > https://lists.sourceforge.net/lists/listinfo/pymol-users
>
> --
> "La conoscenza libera il genere umano dalla superstizione"
> J. Watson
>
>
> -------------------------------------------------------
> This SF.Net email is sponsored by xPML, a groundbreaking scripting langua=
ge
> that extends applications into web and mobile media. Attend the live
> webcast and join the prime developer group breaking into this new coding
> territory!
> http://sel.as-us.falkag.net/sel?cmd=3Dlnk&kid=110944&bid$1720&dat=121642
> _______________________________________________
> PyMOL-users mailing list
> PyM...@li...
> https://lists.sourceforge.net/lists/listinfo/pymol-users

=2D-=20
The Reichstag fire is to Hitler as 9/11 is to Bush