Hi all,
could someone confirm this:
I have some complexes protein+ligand and I'd like to perform rms
calculation for the position of the ligand. This what I have done:
load reference.pdb
select proteinreference, segi A
select ligreference, segi B
load compare.pdb
select proteincomapre, segi A
select ligcompare, segi B
align proteinreference,proteincompare
rms_cur ligreference,ligcompare
is rms_cur the right command to calculate the rms for the ligand
position? then, is the procedure "chemically" correct?
thanks
regards,
andrea
--
"La conoscenza libera il genere umano dalla superstizione"
J. Watson
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