From: Martyn S. <ma...@cr...> - 2005-05-11 10:43:42
|
Dear Tsjerk and other pymolites To draw my cylinders I just modified Warren's example from the CGO demos in the examples/devel directory. I give this below. Maybe there is another way to do this? I would like cylindrical cylinders with sharp cut ends rather than rounded ends. I guess this is down to OPENGL not to pymol. I have another program that looks at the RNA atomic coordinate file and writes in the coordinates of the double-helical regions of the RNA. (currently this is based on a user going through the secondary structure by hand - I discussed with Luca Jovine a little about whether it could be done automatically but he has not time just now to spend on this). So below is an example of Warren's code after I hack in my coordinates, You get it into pymol by using the 'run' command. Thanks for any help with this. Best wishes and regards Martyn ------------------------------------------------------------------- # this is a trivial example of creating a cgo object consisting of a # a single state # first we create a list of floats containing a GL rendering stream # obj is an empty list to begin with... obj = [] obj.extend( [ CYLINDER, 13.839,-33.646,20.164,24.5685,-15.6645,16.6015, #hacked in from coords 10.0, # Radius 0.0, 0.0, 1.0, # RGB Color 1 0.0, 0.0, 1.0, # RGB Color 2 ] ) # then we load it into PyMOL cmd.load_cgo(obj,'cgo013') # move the read clipping plane back a bit to that that is it brighter cmd.clip('far',-5) On Tue, 10 May 2005, T.A.Wassenaar wrote: > Date: Tue, 10 May 2005 21:37:33 +0200 > From: T.A.Wassenaar <T.A...@ru...> > To: Martyn Symmons <ma...@cr...> > Subject: Re: [PyMOL] cgo cylinders with flat ends? > > > Hi Martyn, > > It sounds like you used the SAUSAGE keyword rather than > the CYLINDER keyword, the latter of which is a true > cylinder. But if this line of deduction is wrong, please > show what you tried and the result it gave. > > Cheers, > > Tsjerk > > On Tue, 10 May 2005 18:22:10 +0100 > Martyn Symmons <ma...@cr...> wrote: > > dear pymol-users > > I have used CGO to put down 20 > >angstrom-wide cylinders on > > the helical bits of a large RNA molecule. They come out > >with nice rounded > > ends but I would prefer flattened ends if possible. Is > >there any way I can > > do that? > > Thanks for any help/advice. > > cheerio for now, > > Martyn > > Martyn F. Symmons (Ph.D.) > > Research Associate > > Crystallography and Biocomputing Group > > Department of Biochemistry > > University of Cambridge > > Phone: 01223 766020 > > ----------------------- > > "Abair ach beagan agus abair gu math e" > > Seanfhacal Gaidhlig (Gaelic Proverb). > > > > > > > > > > ------------------------------------------------------- > > This SF.Net email is sponsored by Oracle Space > >Sweepstakes > > Want to be the first software developer in space? > > Enter now for the Oracle Space Sweepstakes! > > http://ads.osdn.com/?ad_id=7393&alloc_id=16281&op=click > > _______________________________________________ > > PyMOL-users mailing list > > PyM...@li... > > https://lists.sourceforge.net/lists/listinfo/pymol-users > > Martyn F. Symmons (Ph.D.) Research Associate Crystallography and Biocomputing Group Department of Biochemistry University of Cambridge Phone: 01223 766020 ----------------------- "Abair ach beagan agus abair gu math e" Seanfhacal Gaidhlig (Gaelic Proverb). |
From: T.A.Wassenaar <T.A...@ru...> - 2005-05-11 11:12:17
|
Hi Martin, For me (Suse 9.0 Linux, Pymol 0.98b) this scripts seems to do exactly what you want. After rendering that is. If the scene is not rendered, the cylinder is an eight-sided prism, which is due to the openGL implementation. Maybe it would be nice if there would be a setting like cgo_quality to enhance such a view without rendering. But does your problem persist after rendering, and if so, could you show an image illustrating that? Though I have to add that I won't be the one to help from that point on, as it'll be in the implementation. Cheers, Tsjerk On Wed, 11 May 2005 11:45:36 +0100 Martyn Symmons <ma...@cr...> wrote: > Dear Tsjerk and other pymolites > > To draw my cylinders I just modified Warren's example >from the CGO > demos in the examples/devel directory. I give this >below. Maybe there is > another way to do this? I would like cylindrical >cylinders with sharp cut > ends rather than rounded ends. I guess this is down to >OPENGL not to > pymol. > > I have another program that looks at the RNA atomic >coordinate file and > writes in the coordinates of the double-helical regions >of the RNA. > (currently this is based on a user going through the >secondary structure > by hand - I discussed with Luca Jovine a little about >whether it could be > done automatically but he has not time just now to spend >on this). > > So below is an example of Warren's code after I hack in >my coordinates, > > You get it into pymol by using the 'run' command. > > Thanks for any help with this. > Best wishes and regards > Martyn > ------------------------------------------------------------------- > > > > # this is a trivial example of creating a cgo object >consisting of a > # a single state > > # first we create a list of floats containing a GL >rendering stream > # obj is an empty list to begin with... > obj = [] > > obj.extend( [ CYLINDER, > 13.839,-33.646,20.164,24.5685,-15.6645,16.6015, #hacked >in from coords > 10.0, > # Radius > 0.0, 0.0, 1.0, # RGB Color 1 > 0.0, 0.0, 1.0, # RGB Color >2 > ] ) > # then we load it into PyMOL > > cmd.load_cgo(obj,'cgo013') > > # move the read clipping plane back a bit to that that >is it brighter > > cmd.clip('far',-5) > > On Tue, 10 May 2005, T.A.Wassenaar wrote: > >> Date: Tue, 10 May 2005 21:37:33 +0200 >> From: T.A.Wassenaar <T.A...@ru...> >> To: Martyn Symmons <ma...@cr...> >> Subject: Re: [PyMOL] cgo cylinders with flat ends? >> >> >> Hi Martyn, >> >> It sounds like you used the SAUSAGE keyword rather than >> the CYLINDER keyword, the latter of which is a true >> cylinder. But if this line of deduction is wrong, please >> show what you tried and the result it gave. >> >> Cheers, >> >> Tsjerk >> >> On Tue, 10 May 2005 18:22:10 +0100 >> Martyn Symmons <ma...@cr...> wrote: >> > dear pymol-users >> > I have used CGO to put down 20 >> >angstrom-wide cylinders on >> > the helical bits of a large RNA molecule. They come >>out >> >with nice rounded >> > ends but I would prefer flattened ends if possible. Is >> >there any way I can >> > do that? >> > Thanks for any help/advice. >> > cheerio for now, >> > Martyn >> > Martyn F. Symmons (Ph.D.) >> > Research Associate >> > Crystallography and Biocomputing Group >> > Department of Biochemistry >> > University of Cambridge >> > Phone: 01223 766020 >> > ----------------------- >> > "Abair ach beagan agus abair gu math e" >> > Seanfhacal Gaidhlig (Gaelic Proverb). >> > >> > >> > >> > >> > >>------------------------------------------------------- >> > This SF.Net email is sponsored by Oracle Space >> >Sweepstakes >> > Want to be the first software developer in space? >> > Enter now for the Oracle Space Sweepstakes! >> > >>http://ads.osdn.com/?ad_id=7393&alloc_id=16281&op=click >> > _______________________________________________ >> > PyMOL-users mailing list >> > PyM...@li... >> > >>https://lists.sourceforge.net/lists/listinfo/pymol-users >> >> > > Martyn F. Symmons (Ph.D.) > Research Associate > Crystallography and Biocomputing Group > Department of Biochemistry > University of Cambridge > Phone: 01223 766020 > ----------------------- > "Abair ach beagan agus abair gu math e" > Seanfhacal Gaidhlig (Gaelic Proverb). > > > > ------------------------------------------------------- > This SF.Net email is sponsored by Oracle Space >Sweepstakes > Want to be the first software developer in space? > Enter now for the Oracle Space Sweepstakes! > http://ads.osdn.com/?ad_id=7393&alloc_id=16281&op=click > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users |
From: Martyn S. <ma...@cr...> - 2005-05-11 12:45:58
|
Dear Tsjerk thanks for that - I am not using the latest pymol so I will upgrade and try again. I will let you know how it goes. cheers Martyn On Wed, 11 May 2005, T.A.Wassenaar wrote: > Date: Wed, 11 May 2005 13:11:54 +0200 > From: T.A.Wassenaar <T.A...@ru...> > To: Martyn Symmons <ma...@cr...> > Cc: pym...@li... > Subject: Re: [PyMOL] cgo cylinders with flat ends? More details > > > Hi Martin, > > For me (Suse 9.0 Linux, Pymol 0.98b) this scripts seems to > do exactly what you want. After rendering that is. If the > scene is not rendered, the cylinder is an eight-sided > prism, which is due to the openGL implementation. Maybe it > would be nice if there would be a setting like cgo_quality > to enhance such a view without rendering. > > But does your problem persist after rendering, and if so, > could you show an image illustrating that? Though I have > to add that I won't be the one to help from that point on, > as it'll be in the implementation. > > Cheers, > > Tsjerk > > On Wed, 11 May 2005 11:45:36 +0100 > Martyn Symmons <ma...@cr...> wrote: > > Dear Tsjerk and other pymolites > > > > To draw my cylinders I just modified Warren's example > >from the CGO > > demos in the examples/devel directory. I give this > >below. Maybe there is > > another way to do this? I would like cylindrical > >cylinders with sharp cut > > ends rather than rounded ends. I guess this is down to > >OPENGL not to > > pymol. > > > > I have another program that looks at the RNA atomic > >coordinate file and > > writes in the coordinates of the double-helical regions > >of the RNA. > > (currently this is based on a user going through the > >secondary structure > > by hand - I discussed with Luca Jovine a little about > >whether it could be > > done automatically but he has not time just now to spend > >on this). > > > > So below is an example of Warren's code after I hack in > >my coordinates, > > > > You get it into pymol by using the 'run' command. > > > > Thanks for any help with this. > > Best wishes and regards > > Martyn > > ------------------------------------------------------------------- > > > > > > > > # this is a trivial example of creating a cgo object > >consisting of a > > # a single state > > > > # first we create a list of floats containing a GL > >rendering stream > > # obj is an empty list to begin with... > > obj = [] > > > > obj.extend( [ CYLINDER, > > 13.839,-33.646,20.164,24.5685,-15.6645,16.6015, #hacked > >in from coords > > 10.0, > > # Radius > > 0.0, 0.0, 1.0, # RGB Color 1 > > 0.0, 0.0, 1.0, # RGB Color > >2 > > ] ) > > # then we load it into PyMOL > > > > cmd.load_cgo(obj,'cgo013') > > > > # move the read clipping plane back a bit to that that > >is it brighter > > > > cmd.clip('far',-5) > > > > On Tue, 10 May 2005, T.A.Wassenaar wrote: > > > >> Date: Tue, 10 May 2005 21:37:33 +0200 > >> From: T.A.Wassenaar <T.A...@ru...> > >> To: Martyn Symmons <ma...@cr...> > >> Subject: Re: [PyMOL] cgo cylinders with flat ends? > >> > >> > >> Hi Martyn, > >> > >> It sounds like you used the SAUSAGE keyword rather than > >> the CYLINDER keyword, the latter of which is a true > >> cylinder. But if this line of deduction is wrong, please > >> show what you tried and the result it gave. > >> > >> Cheers, > >> > >> Tsjerk > >> > >> On Tue, 10 May 2005 18:22:10 +0100 > >> Martyn Symmons <ma...@cr...> wrote: > >> > dear pymol-users > >> > I have used CGO to put down 20 > >> >angstrom-wide cylinders on > >> > the helical bits of a large RNA molecule. They come > >>out > >> >with nice rounded > >> > ends but I would prefer flattened ends if possible. Is > >> >there any way I can > >> > do that? > >> > Thanks for any help/advice. > >> > cheerio for now, > >> > Martyn > >> > Martyn F. Symmons (Ph.D.) > >> > Research Associate > >> > Crystallography and Biocomputing Group > >> > Department of Biochemistry > >> > University of Cambridge > >> > Phone: 01223 766020 > >> > ----------------------- > >> > "Abair ach beagan agus abair gu math e" > >> > Seanfhacal Gaidhlig (Gaelic Proverb). > >> > > >> > > >> > > >> > > >> > > >>------------------------------------------------------- > >> > This SF.Net email is sponsored by Oracle Space > >> >Sweepstakes > >> > Want to be the first software developer in space? > >> > Enter now for the Oracle Space Sweepstakes! > >> > > >>http://ads.osdn.com/?ad_id=7393&alloc_id=16281&op=click > >> > _______________________________________________ > >> > PyMOL-users mailing list > >> > PyM...@li... > >> > > >>https://lists.sourceforge.net/lists/listinfo/pymol-users > >> > >> > > > > Martyn F. Symmons (Ph.D.) > > Research Associate > > Crystallography and Biocomputing Group > > Department of Biochemistry > > University of Cambridge > > Phone: 01223 766020 > > ----------------------- > > "Abair ach beagan agus abair gu math e" > > Seanfhacal Gaidhlig (Gaelic Proverb). > > > > > > > > ------------------------------------------------------- > > This SF.Net email is sponsored by Oracle Space > >Sweepstakes > > Want to be the first software developer in space? > > Enter now for the Oracle Space Sweepstakes! > > http://ads.osdn.com/?ad_id=7393&alloc_id=16281&op=click > > _______________________________________________ > > PyMOL-users mailing list > > PyM...@li... > > https://lists.sourceforge.net/lists/listinfo/pymol-users > Martyn F. Symmons (Ph.D.) Research Associate Crystallography and Biocomputing Group Department of Biochemistry University of Cambridge Phone: 01223 766020 ----------------------- "Abair ach beagan agus abair gu math e" Seanfhacal Gaidhlig (Gaelic Proverb). |
From: Martyn S. <ma...@cr...> - 2005-05-11 13:25:52
|
Dear Tsjerk thanks - you were right - now I have upgraded and they come out as nice flat cylinders, looks good. Thanks again for trying that for me best wishes and regards Martyn > On Wed, 11 May 2005, T.A.Wassenaar wrote: > > > Date: Wed, 11 May 2005 13:11:54 +0200 > > From: T.A.Wassenaar <T.A...@ru...> > > To: Martyn Symmons <ma...@cr...> > > Cc: pym...@li... > > Subject: Re: [PyMOL] cgo cylinders with flat ends? More details > > > > > > Hi Martin, > > > > For me (Suse 9.0 Linux, Pymol 0.98b) this scripts seems to > > do exactly what you want. After rendering that is. If the > > scene is not rendered, the cylinder is an eight-sided > > prism, which is due to the openGL implementation. Maybe it > > would be nice if there would be a setting like cgo_quality > > to enhance such a view without rendering. > > > > But does your problem persist after rendering, and if so, > > could you show an image illustrating that? Though I have > > to add that I won't be the one to help from that point on, > > as it'll be in the implementation. > > > > Cheers, > > > > Tsjerk > > > > On Wed, 11 May 2005 11:45:36 +0100 > > Martyn Symmons <ma...@cr...> wrote: > > > Dear Tsjerk and other pymolites > > > > > > To draw my cylinders I just modified Warren's example > > >from the CGO > > > demos in the examples/devel directory. I give this > > >below. Maybe there is > > > another way to do this? I would like cylindrical > > >cylinders with sharp cut > > > ends rather than rounded ends. I guess this is down to > > >OPENGL not to > > > pymol. > > > > > > I have another program that looks at the RNA atomic > > >coordinate file and > > > writes in the coordinates of the double-helical regions > > >of the RNA. > > > (currently this is based on a user going through the > > >secondary structure > > > by hand - I discussed with Luca Jovine a little about > > >whether it could be > > > done automatically but he has not time just now to spend > > >on this). > > > > > > So below is an example of Warren's code after I hack in > > >my coordinates, > > > > > > You get it into pymol by using the 'run' command. > > > > > > Thanks for any help with this. > > > Best wishes and regards > > > Martyn > > > ------------------------------------------------------------------- > > > > > > > > > > > > # this is a trivial example of creating a cgo object > > >consisting of a > > > # a single state > > > > > > # first we create a list of floats containing a GL > > >rendering stream > > > # obj is an empty list to begin with... > > > obj = [] > > > > > > obj.extend( [ CYLINDER, > > > 13.839,-33.646,20.164,24.5685,-15.6645,16.6015, #hacked > > >in from coords > > > 10.0, > > > # Radius > > > 0.0, 0.0, 1.0, # RGB Color 1 > > > 0.0, 0.0, 1.0, # RGB Color > > >2 > > > ] ) > > > # then we load it into PyMOL > > > > > > cmd.load_cgo(obj,'cgo013') > > > > > > # move the read clipping plane back a bit to that that > > >is it brighter > > > > > > cmd.clip('far',-5) > > > > > > On Tue, 10 May 2005, T.A.Wassenaar wrote: > > > > > >> Date: Tue, 10 May 2005 21:37:33 +0200 > > >> From: T.A.Wassenaar <T.A...@ru...> > > >> To: Martyn Symmons <ma...@cr...> > > >> Subject: Re: [PyMOL] cgo cylinders with flat ends? > > >> > > >> > > >> Hi Martyn, > > >> > > >> It sounds like you used the SAUSAGE keyword rather than > > >> the CYLINDER keyword, the latter of which is a true > > >> cylinder. But if this line of deduction is wrong, please > > >> show what you tried and the result it gave. > > >> > > >> Cheers, > > >> > > >> Tsjerk > > >> > > >> On Tue, 10 May 2005 18:22:10 +0100 > > >> Martyn Symmons <ma...@cr...> wrote: > > >> > dear pymol-users > > >> > I have used CGO to put down 20 > > >> >angstrom-wide cylinders on > > >> > the helical bits of a large RNA molecule. They come > > >>out > > >> >with nice rounded > > >> > ends but I would prefer flattened ends if possible. Is > > >> >there any way I can > > >> > do that? > > >> > Thanks for any help/advice. > > >> > cheerio for now, > > >> > Martyn > > >> > Martyn F. Symmons (Ph.D.) > > >> > Research Associate > > >> > Crystallography and Biocomputing Group > > >> > Department of Biochemistry > > >> > University of Cambridge > > >> > Phone: 01223 766020 > > >> > ----------------------- > > >> > "Abair ach beagan agus abair gu math e" > > >> > Seanfhacal Gaidhlig (Gaelic Proverb). > > >> > > > >> > > > >> > > > >> > > > >> > > > >>------------------------------------------------------- > > >> > This SF.Net email is sponsored by Oracle Space > > >> >Sweepstakes > > >> > Want to be the first software developer in space? > > >> > Enter now for the Oracle Space Sweepstakes! > > >> > > > >>http://ads.osdn.com/?ad_id=7393&alloc_id=16281&op=click > > >> > _______________________________________________ > > >> > PyMOL-users mailing list > > >> > PyM...@li... > > >> > > > >>https://lists.sourceforge.net/lists/listinfo/pymol-users > > >> > > >> > > > > > > Martyn F. Symmons (Ph.D.) > > > Research Associate > > > Crystallography and Biocomputing Group > > > Department of Biochemistry > > > University of Cambridge > > > Phone: 01223 766020 > > > ----------------------- > > > "Abair ach beagan agus abair gu math e" > > > Seanfhacal Gaidhlig (Gaelic Proverb). > > > > > > > > > > > > ------------------------------------------------------- > > > This SF.Net email is sponsored by Oracle Space > > >Sweepstakes > > > Want to be the first software developer in space? > > > Enter now for the Oracle Space Sweepstakes! > > > http://ads.osdn.com/?ad_id=7393&alloc_id=16281&op=click > > > _______________________________________________ > > > PyMOL-users mailing list > > > PyM...@li... > > > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > > Martyn F. Symmons (Ph.D.) > Research Associate > Crystallography and Biocomputing Group > Department of Biochemistry > University of Cambridge > Phone: 01223 766020 > ----------------------- > "Abair ach beagan agus abair gu math e" > Seanfhacal Gaidhlig (Gaelic Proverb). > > > > ------------------------------------------------------- > This SF.Net email is sponsored by Oracle Space Sweepstakes > Want to be the first software developer in space? > Enter now for the Oracle Space Sweepstakes! > http://ads.osdn.com/?ad_id=7393&alloc_id=16281&op=click > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users > Martyn F. Symmons (Ph.D.) Research Associate Crystallography and Biocomputing Group Department of Biochemistry University of Cambridge Phone: 01223 766020 ----------------------- "Abair ach beagan agus abair gu math e" Seanfhacal Gaidhlig (Gaelic Proverb). |
From: Warren D. <wa...@de...> - 2005-05-11 14:27:51
|
> Maybe it would be nice > if there would be a setting like cgo_quality to enhance such > a view without rendering. makes no sense, but the cgo ylinder quality is bound to stick_quality: set stick_quality, 24 *before* loading the cgo object. Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 USA . Biz:(650)-872-0942 Tech:(650)-872-0834 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:wa...@de... > -----Original Message----- > From: pym...@li... > [mailto:pym...@li...] On Behalf Of > T.A.Wassenaar > Sent: Wednesday, May 11, 2005 4:12 AM > To: Martyn Symmons > Cc: pym...@li... > Subject: Re: [PyMOL] cgo cylinders with flat ends? More details > > > Hi Martin, > > For me (Suse 9.0 Linux, Pymol 0.98b) this scripts seems to do > exactly what you want. After rendering that is. If the scene > is not rendered, the cylinder is an eight-sided prism, which > is due to the openGL implementation. Maybe it would be nice > if there would be a setting like cgo_quality to enhance such > a view without rendering. > > But does your problem persist after rendering, and if so, > could you show an image illustrating that? Though I have to > add that I won't be the one to help from that point on, as > it'll be in the implementation. > > Cheers, > > Tsjerk > > On Wed, 11 May 2005 11:45:36 +0100 > Martyn Symmons <ma...@cr...> wrote: > > Dear Tsjerk and other pymolites > > > > To draw my cylinders I just modified Warren's example > from the CGO > >demos in the examples/devel directory. I give this below. > Maybe there > >is another way to do this? I would like cylindrical cylinders with > >sharp cut ends rather than rounded ends. I guess this is down to > >OPENGL not to pymol. > > > > I have another program that looks at the RNA atomic coordinate file > >and writes in the coordinates of the double-helical regions of the > >RNA. > > (currently this is based on a user going through the secondary > >structure by hand - I discussed with Luca Jovine a little about > >whether it could be done automatically but he has not time > just now to > >spend on this). > > > > So below is an example of Warren's code after I hack in my > >coordinates, > > > > You get it into pymol by using the 'run' command. > > > > Thanks for any help with this. > > Best wishes and regards > > Martyn > > ------------------------------------------------------------------- > > > > > > > > # this is a trivial example of creating a cgo object > consisting of a > ># a single state > > > > # first we create a list of floats containing a GL > rendering stream # > >obj is an empty list to begin with... > > obj = [] > > > > obj.extend( [ CYLINDER, > > 13.839,-33.646,20.164,24.5685,-15.6645,16.6015, #hacked in > from coords > > 10.0, > > # Radius > > 0.0, 0.0, 1.0, # RGB Color 1 > > 0.0, 0.0, 1.0, # RGB Color > >2 > > ] ) > > # then we load it into PyMOL > > > > cmd.load_cgo(obj,'cgo013') > > > > # move the read clipping plane back a bit to that that is > it brighter > > > > cmd.clip('far',-5) > > > > On Tue, 10 May 2005, T.A.Wassenaar wrote: > > > >> Date: Tue, 10 May 2005 21:37:33 +0200 > >> From: T.A.Wassenaar <T.A...@ru...> > >> To: Martyn Symmons <ma...@cr...> > >> Subject: Re: [PyMOL] cgo cylinders with flat ends? > >> > >> > >> Hi Martyn, > >> > >> It sounds like you used the SAUSAGE keyword rather than > the CYLINDER > >> keyword, the latter of which is a true cylinder. But if > this line of > >> deduction is wrong, please show what you tried and the result it > >> gave. > >> > >> Cheers, > >> > >> Tsjerk > >> > >> On Tue, 10 May 2005 18:22:10 +0100 > >> Martyn Symmons <ma...@cr...> wrote: > >> > dear pymol-users > >> > I have used CGO to put down 20 angstrom-wide > >> >cylinders on the helical bits of a large RNA molecule. They come > >>out > >> >with nice rounded > >> > ends but I would prefer flattened ends if possible. Is there any > >> >way I can do that? > >> > Thanks for any help/advice. > >> > cheerio for now, > >> > Martyn > >> > Martyn F. Symmons (Ph.D.) > >> > Research Associate > >> > Crystallography and Biocomputing Group Department of > Biochemistry > >> >University of Cambridge > >> > Phone: 01223 766020 > >> > ----------------------- > >> > "Abair ach beagan agus abair gu math e" > >> > Seanfhacal Gaidhlig (Gaelic Proverb). > >> > > >> > > >> > > >> > > >> > > >>------------------------------------------------------- > >> > This SF.Net email is sponsored by Oracle Space > Sweepstakes Want to > >> >be the first software developer in space? > >> > Enter now for the Oracle Space Sweepstakes! > >> > > >>http://ads.osdn.com/?ad_id=7393&alloc_id=16281&op=click > >> > _______________________________________________ > >> > PyMOL-users mailing list > >> > PyM...@li... > >> > > >>https://lists.sourceforge.net/lists/listinfo/pymol-users > >> > >> > > > > Martyn F. Symmons (Ph.D.) > > Research Associate > > Crystallography and Biocomputing Group Department of Biochemistry > > University of Cambridge > > Phone: 01223 766020 > > ----------------------- > > "Abair ach beagan agus abair gu math e" > > Seanfhacal Gaidhlig (Gaelic Proverb). > > > > > > > > ------------------------------------------------------- > > This SF.Net email is sponsored by Oracle Space Sweepstakes > Want to be > >the first software developer in space? > > Enter now for the Oracle Space Sweepstakes! > > http://ads.osdn.com/?ad_id=7393&alloc_id=16281&op=click > > _______________________________________________ > > PyMOL-users mailing list > > PyM...@li... > > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > ------------------------------------------------------- > This SF.Net email is sponsored by Oracle Space Sweepstakes > Want to be the first software developer in space? > Enter now for the Oracle Space Sweepstakes! > http://ads.osdn.com/?ad_id=7393&alloc_id=16281&op=click > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users > |